Wall clock time and date at job start Tue Mar 31 2020 18:55:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45209 * 1 3 3 C 1.34632 * 116.99780 * 2 1 4 4 O 1.21518 * 120.00353 * 359.97438 * 3 2 1 5 5 N 1.34775 * 119.99900 * 179.97438 * 3 2 1 6 6 C 1.46499 * 119.99994 * 179.97438 * 5 3 2 7 7 N 1.40099 * 120.00211 * 0.02562 * 5 3 2 8 8 C 1.34780 * 119.99873 * 254.99855 * 7 5 3 9 9 O 1.21588 * 120.00397 * 179.97438 * 8 7 5 10 10 N 1.34781 * 119.99755 * 359.97438 * 8 7 5 11 11 C 1.46502 * 119.99887 * 180.02562 * 10 8 7 12 12 H 1.08999 * 109.47018 * 34.99305 * 11 10 8 13 13 C 1.52994 * 109.47147 * 154.99570 * 11 10 8 14 14 C 1.53001 * 109.47367 * 294.99987 * 13 11 10 15 15 C 1.50697 * 109.46995 * 180.02562 * 14 13 11 16 16 H 1.07991 * 120.00449 * 359.72153 * 15 14 13 17 17 C 1.37885 * 119.99686 * 179.97438 * 15 14 13 18 18 N 1.31516 * 119.99913 * 359.72095 * 17 15 14 19 19 Si 1.86798 * 119.99766 * 179.72528 * 17 15 14 20 20 H 1.48493 * 109.47326 * 90.00142 * 19 17 15 21 21 H 1.48506 * 109.46545 * 209.99892 * 19 17 15 22 22 H 1.48498 * 109.47210 * 329.99603 * 19 17 15 23 23 C 1.50698 * 109.47051 * 274.99593 * 11 10 8 24 24 C 1.38241 * 119.99949 * 319.72756 * 23 11 10 25 25 C 1.38231 * 119.99869 * 179.80863 * 24 23 11 26 26 C 1.38238 * 120.00136 * 0.39613 * 25 24 23 27 27 C 1.38233 * 120.00010 * 359.85627 * 26 25 24 28 28 C 1.38233 * 119.99753 * 359.95488 * 27 26 25 29 29 H 1.08995 * 109.46856 * 300.00200 * 1 2 3 30 30 H 1.09000 * 109.46904 * 59.99788 * 1 2 3 31 31 H 1.09001 * 109.46981 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47382 * 270.00269 * 6 5 3 33 33 H 1.08999 * 109.47315 * 30.00852 * 6 5 3 34 34 H 1.09008 * 109.47376 * 150.00144 * 6 5 3 35 35 H 0.96995 * 120.00271 * 74.99195 * 7 5 3 36 36 H 0.96991 * 120.00054 * 359.97438 * 10 8 7 37 37 H 1.08998 * 109.47353 * 174.99766 * 13 11 10 38 38 H 1.09006 * 109.47395 * 55.00021 * 13 11 10 39 39 H 1.08998 * 109.47065 * 59.99602 * 14 13 11 40 40 H 1.09001 * 109.46892 * 299.99866 * 14 13 11 41 41 H 0.97000 * 119.99651 * 180.02562 * 18 17 15 42 42 H 1.07998 * 120.00120 * 359.97438 * 24 23 11 43 43 H 1.08001 * 120.00028 * 180.23180 * 25 24 23 44 44 H 1.08001 * 120.00168 * 179.83155 * 26 25 24 45 45 H 1.07993 * 120.00215 * 179.97438 * 27 26 25 46 46 H 1.08003 * 120.00000 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0633 1.1996 0.0000 4 8 1.4014 2.2187 -0.0005 5 7 3.4092 1.2702 0.0005 6 6 4.0742 2.5755 0.0000 7 7 4.1723 0.0952 0.0005 8 6 4.7923 -0.3056 1.1281 9 8 5.4542 -1.3255 1.1284 10 7 4.6785 0.4242 2.2555 11 6 5.3529 -0.0112 3.4811 12 1 6.3033 -0.4799 3.2259 13 6 5.6068 1.1996 4.3812 14 6 6.5900 2.1491 3.6936 15 6 6.8405 3.3414 4.5806 16 1 6.3443 3.4169 5.5368 17 6 7.6992 4.3385 4.1689 18 7 8.3039 4.2464 3.0046 19 14 8.0038 5.8202 5.2649 20 1 9.1533 5.5434 6.1633 21 1 8.3079 7.0047 4.4225 22 1 6.7923 6.0904 6.0800 23 6 4.4825 -1.0037 4.2079 24 6 3.1162 -0.8049 4.2763 25 6 2.3173 -1.7174 4.9396 26 6 2.8857 -2.8245 5.5415 27 6 4.2525 -3.0206 5.4776 28 6 5.0509 -2.1101 4.8110 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 4.2396 2.8986 -1.0278 33 1 3.4461 3.3036 0.5132 34 1 5.0320 2.4956 0.5142 35 1 4.2543 -0.4298 -0.8109 36 1 4.1508 1.2380 2.2553 37 1 6.0273 0.8655 5.3296 38 1 4.6666 1.7201 4.5639 39 1 6.1695 2.4832 2.7452 40 1 7.5302 1.6287 3.5110 41 1 8.9083 4.9477 2.7152 42 1 2.6726 0.0619 3.8092 43 1 1.2495 -1.5641 4.9898 44 1 2.2618 -3.5360 6.0621 45 1 4.6966 -3.8852 5.9482 46 1 6.1189 -2.2631 4.7614 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000875617226.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:55:40 Heat of formation + Delta-G solvation = -49.207002 kcal Electronic energy + Delta-G solvation = -29944.442143 eV Core-core repulsion = 25835.854633 eV Total energy + Delta-G solvation = -4108.587510 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.93287 -39.98604 -38.86092 -37.14345 -36.15742 -35.73057 -33.18735 -31.82222 -30.97538 -30.63957 -30.35783 -28.53978 -26.62873 -26.12421 -23.70815 -22.52779 -22.08775 -21.24677 -20.77090 -20.01958 -19.38338 -18.14098 -17.30169 -16.87244 -16.58985 -16.30043 -16.09056 -15.49597 -15.13066 -14.68135 -14.52370 -14.47496 -14.20485 -14.12686 -13.87499 -13.28176 -13.15810 -12.96596 -12.90136 -12.56750 -12.39896 -12.31266 -12.12988 -11.75853 -11.16206 -11.05526 -10.98665 -10.98349 -10.94795 -10.68022 -10.57363 -10.44782 -9.92976 -9.77594 -9.62442 -9.20667 -9.15273 -8.78800 -8.71230 -8.44149 -8.39830 -6.05695 -4.08409 1.44462 1.54353 1.59077 2.48920 2.63904 3.26034 3.28702 3.35690 3.38466 3.56213 4.01322 4.41581 4.81758 4.92330 5.00249 5.01510 5.05449 5.13760 5.26939 5.29142 5.30376 5.34662 5.38089 5.58487 5.66534 5.76150 5.77349 5.86399 5.94912 6.12235 6.19237 6.23840 6.33239 6.54308 6.62680 6.65843 6.70829 6.83551 6.91980 6.93440 7.14256 7.18467 7.59525 7.70660 7.81539 7.93168 8.23371 8.34687 8.66965 8.98201 9.56311 11.05020 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.008020 B = 0.004543 C = 0.003359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3490.397356 B = 6162.437520 C = 8333.955282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.055 3.945 2 O -0.360 6.360 3 C 0.654 3.346 4 O -0.556 6.556 5 N -0.398 5.398 6 C 0.094 3.906 7 N -0.528 5.528 8 C 0.718 3.282 9 O -0.573 6.573 10 N -0.718 5.718 11 C 0.197 3.803 12 H 0.097 0.903 13 C -0.114 4.114 14 C 0.026 3.974 15 C -0.522 4.522 16 H 0.055 0.945 17 C 0.060 3.940 18 N -0.893 5.893 19 Si 0.890 3.110 20 H -0.281 1.281 21 H -0.287 1.287 22 H -0.274 1.274 23 C -0.080 4.080 24 C -0.104 4.104 25 C -0.123 4.123 26 C -0.129 4.129 27 C -0.121 4.121 28 C -0.104 4.104 29 H 0.064 0.936 30 H 0.063 0.937 31 H 0.103 0.897 32 H 0.069 0.931 33 H 0.098 0.902 34 H 0.096 0.904 35 H 0.427 0.573 36 H 0.399 0.601 37 H 0.070 0.930 38 H 0.055 0.945 39 H 0.017 0.983 40 H 0.018 0.982 41 H 0.260 0.740 42 H 0.113 0.887 43 H 0.116 0.884 44 H 0.116 0.884 45 H 0.118 0.882 46 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.001 -10.878 -4.250 18.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 O -0.273 6.273 3 C 0.408 3.592 4 O -0.441 6.441 5 N -0.234 5.234 6 C -0.046 4.046 7 N -0.287 5.287 8 C 0.418 3.582 9 O -0.447 6.447 10 N -0.373 5.373 11 C 0.092 3.908 12 H 0.115 0.885 13 C -0.152 4.152 14 C -0.011 4.011 15 C -0.561 4.561 16 H 0.073 0.927 17 C -0.142 4.142 18 N -0.532 5.532 19 Si 0.718 3.282 20 H -0.207 1.207 21 H -0.212 1.212 22 H -0.199 1.199 23 C -0.082 4.082 24 C -0.122 4.122 25 C -0.142 4.142 26 C -0.147 4.147 27 C -0.140 4.140 28 C -0.123 4.123 29 H 0.083 0.917 30 H 0.082 0.918 31 H 0.121 0.879 32 H 0.088 0.912 33 H 0.116 0.884 34 H 0.115 0.885 35 H 0.272 0.728 36 H 0.234 0.766 37 H 0.088 0.912 38 H 0.074 0.926 39 H 0.035 0.965 40 H 0.036 0.964 41 H 0.070 0.930 42 H 0.131 0.869 43 H 0.134 0.866 44 H 0.134 0.866 45 H 0.136 0.864 46 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -13.669 -11.145 -4.182 18.126 hybrid contribution -0.169 1.133 0.120 1.151 sum -13.838 -10.012 -4.062 17.557 Atomic orbital electron populations 1.23244 0.74352 1.03629 1.02766 1.86345 1.24087 1.30420 1.86487 1.18189 0.82159 0.82636 0.76218 1.91063 1.62462 1.35029 1.55582 1.45959 0.99282 1.00270 1.77863 1.22245 0.99138 0.79486 1.03776 1.44605 1.51963 1.18839 1.13318 1.15953 0.79387 0.82930 0.79964 1.90995 1.45092 1.25565 1.83027 1.45202 1.54885 1.28041 1.09123 1.20075 0.93810 0.94495 0.82416 0.88537 1.22003 1.01240 0.93883 0.98066 1.19085 0.93426 0.93003 0.95563 1.21217 1.26232 1.04756 1.03865 0.92689 1.24987 0.95819 0.98277 0.95081 1.69958 1.29489 1.34022 1.19732 0.86632 0.78605 0.82440 0.80555 1.20684 1.21248 1.19905 1.20412 0.94447 0.95725 0.97566 1.20864 0.93347 0.99016 0.99003 1.21045 0.99371 0.95060 0.98679 1.21048 0.95127 0.97996 1.00575 1.21071 0.93869 0.99251 0.99762 1.21025 1.00080 0.93715 0.97482 0.91683 0.91787 0.87914 0.91211 0.88365 0.88526 0.72818 0.76610 0.91184 0.92630 0.96509 0.96409 0.92994 0.86892 0.86644 0.86639 0.86358 0.85919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.46 10.56 101.05 1.07 1.53 16 2 O -0.36 -4.34 10.17 -40.30 -0.41 -4.75 16 3 C 0.65 8.77 8.53 54.05 0.46 9.23 16 4 O -0.56 -8.51 15.71 -19.29 -0.30 -8.82 16 5 N -0.40 -5.04 2.71 -72.12 -0.20 -5.23 16 6 C 0.09 1.13 9.84 59.85 0.59 1.72 16 7 N -0.53 -6.93 5.54 27.64 0.15 -6.78 16 8 C 0.72 11.71 8.50 -86.91 -0.74 10.97 16 9 O -0.57 -11.10 16.84 5.29 0.09 -11.01 16 10 N -0.72 -11.50 3.61 -59.81 -0.22 -11.72 16 11 C 0.20 3.36 2.17 -69.08 -0.15 3.21 16 12 H 0.10 1.81 7.44 -51.93 -0.39 1.42 16 13 C -0.11 -2.16 4.67 -26.73 -0.12 -2.29 16 14 C 0.03 0.62 4.86 -27.88 -0.14 0.49 16 15 C -0.52 -13.95 9.11 -34.44 -0.31 -14.26 16 16 H 0.05 1.44 7.74 -52.49 -0.41 1.03 16 17 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 18 N -0.89 -25.55 13.29 55.43 0.74 -24.81 16 19 Si 0.89 20.96 29.54 -169.99 -5.02 15.94 16 20 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 21 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 22 H -0.27 -6.35 7.11 56.52 0.40 -5.94 16 23 C -0.08 -1.26 4.91 -104.62 -0.51 -1.77 16 24 C -0.10 -1.51 9.32 -39.58 -0.37 -1.88 16 25 C -0.12 -1.58 10.05 -39.58 -0.40 -1.98 16 26 C -0.13 -1.57 10.05 -39.58 -0.40 -1.97 16 27 C -0.12 -1.55 10.05 -39.58 -0.40 -1.95 16 28 C -0.10 -1.53 9.67 -39.58 -0.38 -1.92 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.10 1.20 7.42 -51.93 -0.39 0.81 16 34 H 0.10 1.32 7.89 -51.92 -0.41 0.91 16 35 H 0.43 4.83 8.93 -182.60 -1.63 3.20 16 36 H 0.40 6.15 6.88 -40.82 -0.28 5.87 16 37 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 38 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 39 H 0.02 0.40 7.75 -51.93 -0.40 0.00 16 40 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 42 H 0.11 1.60 7.73 -52.49 -0.41 1.19 16 43 H 0.12 1.21 8.06 -52.49 -0.42 0.79 16 44 H 0.12 1.11 8.06 -52.49 -0.42 0.68 16 45 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 46 H 0.12 1.69 8.04 -52.48 -0.42 1.27 16 LS Contribution 395.77 15.07 5.96 5.96 Total: -1.00 -32.82 395.77 -9.20 -42.01 By element: Atomic # 1 Polarization: 16.63 SS G_CDS: -8.09 Total: 8.54 kcal Atomic # 6 Polarization: 2.57 SS G_CDS: -1.90 Total: 0.67 kcal Atomic # 7 Polarization: -49.02 SS G_CDS: 0.48 Total: -48.54 kcal Atomic # 8 Polarization: -23.96 SS G_CDS: -0.62 Total: -24.58 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -32.82 -9.20 -42.01 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000875617226.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.195 kcal (2) G-P(sol) polarization free energy of solvation -32.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.012 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds