Wall clock time and date at job start Tue Mar 31 2020 18:55:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45209 * 1 3 3 C 1.34632 * 116.99780 * 2 1 4 4 O 1.21518 * 120.00353 * 359.97438 * 3 2 1 5 5 N 1.34775 * 119.99900 * 179.97438 * 3 2 1 6 6 C 1.46499 * 119.99994 * 179.97438 * 5 3 2 7 7 N 1.40099 * 120.00211 * 0.02562 * 5 3 2 8 8 C 1.34780 * 119.99873 * 254.99855 * 7 5 3 9 9 O 1.21588 * 120.00397 * 179.97438 * 8 7 5 10 10 N 1.34781 * 119.99755 * 359.97438 * 8 7 5 11 11 C 1.46502 * 119.99887 * 180.02562 * 10 8 7 12 12 H 1.08999 * 109.47018 * 34.99305 * 11 10 8 13 13 C 1.52994 * 109.47147 * 154.99570 * 11 10 8 14 14 C 1.53001 * 109.47367 * 294.99987 * 13 11 10 15 15 C 1.50697 * 109.46995 * 180.02562 * 14 13 11 16 16 H 1.07991 * 120.00449 * 359.72153 * 15 14 13 17 17 C 1.37885 * 119.99686 * 179.97438 * 15 14 13 18 18 N 1.31516 * 119.99913 * 359.72095 * 17 15 14 19 19 Si 1.86798 * 119.99766 * 179.72528 * 17 15 14 20 20 H 1.48493 * 109.47326 * 90.00142 * 19 17 15 21 21 H 1.48506 * 109.46545 * 209.99892 * 19 17 15 22 22 H 1.48498 * 109.47210 * 329.99603 * 19 17 15 23 23 C 1.50698 * 109.47051 * 274.99593 * 11 10 8 24 24 C 1.38241 * 119.99949 * 319.72756 * 23 11 10 25 25 C 1.38231 * 119.99869 * 179.80863 * 24 23 11 26 26 C 1.38238 * 120.00136 * 0.39613 * 25 24 23 27 27 C 1.38233 * 120.00010 * 359.85627 * 26 25 24 28 28 C 1.38233 * 119.99753 * 359.95488 * 27 26 25 29 29 H 1.08995 * 109.46856 * 300.00200 * 1 2 3 30 30 H 1.09000 * 109.46904 * 59.99788 * 1 2 3 31 31 H 1.09001 * 109.46981 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47382 * 270.00269 * 6 5 3 33 33 H 1.08999 * 109.47315 * 30.00852 * 6 5 3 34 34 H 1.09008 * 109.47376 * 150.00144 * 6 5 3 35 35 H 0.96995 * 120.00271 * 74.99195 * 7 5 3 36 36 H 0.96991 * 120.00054 * 359.97438 * 10 8 7 37 37 H 1.08998 * 109.47353 * 174.99766 * 13 11 10 38 38 H 1.09006 * 109.47395 * 55.00021 * 13 11 10 39 39 H 1.08998 * 109.47065 * 59.99602 * 14 13 11 40 40 H 1.09001 * 109.46892 * 299.99866 * 14 13 11 41 41 H 0.97000 * 119.99651 * 180.02562 * 18 17 15 42 42 H 1.07998 * 120.00120 * 359.97438 * 24 23 11 43 43 H 1.08001 * 120.00028 * 180.23180 * 25 24 23 44 44 H 1.08001 * 120.00168 * 179.83155 * 26 25 24 45 45 H 1.07993 * 120.00215 * 179.97438 * 27 26 25 46 46 H 1.08003 * 120.00000 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0633 1.1996 0.0000 4 8 1.4014 2.2187 -0.0005 5 7 3.4092 1.2702 0.0005 6 6 4.0742 2.5755 0.0000 7 7 4.1723 0.0952 0.0005 8 6 4.7923 -0.3056 1.1281 9 8 5.4542 -1.3255 1.1284 10 7 4.6785 0.4242 2.2555 11 6 5.3529 -0.0112 3.4811 12 1 6.3033 -0.4799 3.2259 13 6 5.6068 1.1996 4.3812 14 6 6.5900 2.1491 3.6936 15 6 6.8405 3.3414 4.5806 16 1 6.3443 3.4169 5.5368 17 6 7.6992 4.3385 4.1689 18 7 8.3039 4.2464 3.0046 19 14 8.0038 5.8202 5.2649 20 1 9.1533 5.5434 6.1633 21 1 8.3079 7.0047 4.4225 22 1 6.7923 6.0904 6.0800 23 6 4.4825 -1.0037 4.2079 24 6 3.1162 -0.8049 4.2763 25 6 2.3173 -1.7174 4.9396 26 6 2.8857 -2.8245 5.5415 27 6 4.2525 -3.0206 5.4776 28 6 5.0509 -2.1101 4.8110 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 4.2396 2.8986 -1.0278 33 1 3.4461 3.3036 0.5132 34 1 5.0320 2.4956 0.5142 35 1 4.2543 -0.4298 -0.8109 36 1 4.1508 1.2380 2.2553 37 1 6.0273 0.8655 5.3296 38 1 4.6666 1.7201 4.5639 39 1 6.1695 2.4832 2.7452 40 1 7.5302 1.6287 3.5110 41 1 8.9083 4.9477 2.7152 42 1 2.6726 0.0619 3.8092 43 1 1.2495 -1.5641 4.9898 44 1 2.2618 -3.5360 6.0621 45 1 4.6966 -3.8852 5.9482 46 1 6.1189 -2.2631 4.7614 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000875617226.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:55:39 Heat of formation + Delta-G solvation = -68.617753 kcal Electronic energy + Delta-G solvation = -29945.283856 eV Core-core repulsion = 25835.854633 eV Total energy + Delta-G solvation = -4109.429223 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.05058 -41.18172 -39.97233 -38.18622 -37.34165 -37.11025 -35.11304 -33.16554 -32.27878 -31.83224 -31.64729 -29.40095 -28.20679 -27.13183 -25.36543 -23.62049 -23.21794 -22.59806 -22.15536 -21.31596 -20.47858 -19.39628 -18.51268 -18.31905 -17.74281 -17.61478 -17.29299 -16.73799 -16.52374 -16.19677 -15.81782 -15.71798 -15.22565 -15.13376 -15.04158 -14.63513 -14.56824 -14.22493 -13.96292 -13.90564 -13.74640 -13.47046 -13.37266 -13.05798 -12.85405 -12.52039 -12.46378 -12.17067 -12.12925 -11.94063 -11.87972 -11.85646 -11.60550 -11.43551 -11.19106 -10.98535 -10.51968 -10.32661 -10.06552 -9.76625 -9.56897 -8.15994 -6.25903 0.38376 0.48362 0.55086 1.42467 1.42669 1.43363 1.53603 1.58379 1.94039 2.38623 2.43387 2.94628 3.17854 3.75611 3.82660 3.97072 4.15982 4.20162 4.27760 4.30984 4.32474 4.34979 4.35556 4.41812 4.64424 4.66460 4.67266 4.74031 4.79393 4.94695 4.98449 5.09969 5.17496 5.18771 5.26876 5.34570 5.54352 5.61245 5.64450 5.68437 5.70899 5.79712 5.87853 5.98324 6.15902 6.27571 6.67451 6.89851 7.07123 7.40276 7.42996 8.94774 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.008020 B = 0.004543 C = 0.003359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3490.397356 B = 6162.437520 C = 8333.955282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.047 3.953 2 O -0.367 6.367 3 C 0.656 3.344 4 O -0.576 6.576 5 N -0.395 5.395 6 C 0.096 3.904 7 N -0.514 5.514 8 C 0.718 3.282 9 O -0.606 6.606 10 N -0.715 5.715 11 C 0.208 3.792 12 H 0.072 0.928 13 C -0.096 4.096 14 C 0.034 3.966 15 C -0.540 4.540 16 H 0.058 0.942 17 C 0.008 3.992 18 N -0.927 5.927 19 Si 0.956 3.044 20 H -0.277 1.277 21 H -0.283 1.283 22 H -0.264 1.264 23 C -0.099 4.099 24 C -0.116 4.116 25 C -0.125 4.125 26 C -0.125 4.125 27 C -0.123 4.123 28 C -0.124 4.124 29 H 0.063 0.937 30 H 0.069 0.931 31 H 0.132 0.868 32 H 0.090 0.910 33 H 0.097 0.903 34 H 0.077 0.923 35 H 0.438 0.562 36 H 0.401 0.599 37 H 0.069 0.931 38 H 0.063 0.937 39 H 0.006 0.994 40 H -0.015 1.015 41 H 0.262 0.738 42 H 0.111 0.889 43 H 0.142 0.858 44 H 0.149 0.851 45 H 0.144 0.856 46 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.039 -11.506 -3.269 20.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 O -0.280 6.280 3 C 0.411 3.589 4 O -0.463 6.463 5 N -0.230 5.230 6 C -0.044 4.044 7 N -0.273 5.273 8 C 0.417 3.583 9 O -0.482 6.482 10 N -0.369 5.369 11 C 0.103 3.897 12 H 0.091 0.909 13 C -0.134 4.134 14 C -0.003 4.003 15 C -0.578 4.578 16 H 0.076 0.924 17 C -0.190 4.190 18 N -0.567 5.567 19 Si 0.781 3.219 20 H -0.203 1.203 21 H -0.209 1.209 22 H -0.189 1.189 23 C -0.101 4.101 24 C -0.134 4.134 25 C -0.142 4.142 26 C -0.143 4.143 27 C -0.140 4.140 28 C -0.143 4.143 29 H 0.082 0.918 30 H 0.088 0.912 31 H 0.150 0.850 32 H 0.109 0.891 33 H 0.116 0.884 34 H 0.096 0.904 35 H 0.285 0.715 36 H 0.237 0.763 37 H 0.087 0.913 38 H 0.082 0.918 39 H 0.025 0.975 40 H 0.003 0.997 41 H 0.071 0.929 42 H 0.129 0.871 43 H 0.160 0.840 44 H 0.167 0.833 45 H 0.162 0.838 46 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -15.737 -11.776 -3.214 19.916 hybrid contribution 0.407 1.267 -0.191 1.344 sum -15.330 -10.509 -3.405 18.896 Atomic orbital electron populations 1.23578 0.72357 1.05709 1.03025 1.86356 1.26062 1.29468 1.86099 1.18215 0.82052 0.82858 0.75817 1.91048 1.62807 1.35830 1.56602 1.45974 0.99286 1.00007 1.77750 1.22241 0.98068 0.79256 1.04860 1.44337 1.51234 1.18994 1.12739 1.16008 0.79283 0.82526 0.80451 1.90968 1.46577 1.26972 1.83702 1.45097 1.54667 1.28090 1.09018 1.19741 0.93609 0.93855 0.82525 0.90941 1.21736 1.00047 0.93792 0.97870 1.18927 0.93024 0.93045 0.95275 1.21635 1.26191 1.05661 1.04288 0.92356 1.25817 0.95628 1.01219 0.96370 1.70081 1.30177 1.35041 1.21408 0.85592 0.78715 0.78838 0.78764 1.20294 1.20900 1.18864 1.20259 0.94876 0.96118 0.98816 1.20950 0.92967 0.99742 0.99768 1.21383 1.00582 0.94587 0.97685 1.21472 0.95150 0.98052 0.99587 1.21401 0.94303 0.99364 0.98965 1.21191 1.00488 0.94269 0.98335 0.91774 0.91237 0.84954 0.89126 0.88407 0.90402 0.71522 0.76282 0.91260 0.91849 0.97549 0.99701 0.92925 0.87058 0.84046 0.83347 0.83833 0.86204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.71 10.56 113.37 1.20 1.91 16 2 O -0.37 -8.37 10.17 -55.41 -0.56 -8.93 16 3 C 0.66 17.11 8.53 129.79 1.11 18.22 16 4 O -0.58 -17.23 15.71 19.78 0.31 -16.92 16 5 N -0.39 -9.89 2.71 -612.51 -1.66 -11.55 16 6 C 0.10 2.33 9.84 127.77 1.26 3.58 16 7 N -0.51 -13.50 5.54 -184.74 -1.02 -14.53 16 8 C 0.72 23.96 8.50 179.05 1.52 25.48 16 9 O -0.61 -24.15 16.84 -3.99 -0.07 -24.21 16 10 N -0.71 -23.62 3.61 -461.41 -1.67 -25.29 16 11 C 0.21 7.38 2.17 44.24 0.10 7.47 16 12 H 0.07 2.90 7.44 -2.39 -0.02 2.88 16 13 C -0.10 -3.77 4.67 30.59 0.14 -3.63 16 14 C 0.03 1.70 4.86 29.85 0.15 1.85 16 15 C -0.54 -29.27 9.11 25.60 0.23 -29.04 16 16 H 0.06 3.06 7.74 -2.92 -0.02 3.03 16 17 C 0.01 0.44 5.46 84.66 0.46 0.90 16 18 N -0.93 -54.16 13.29 21.45 0.28 -53.88 16 19 Si 0.96 43.07 29.54 68.60 2.03 45.09 16 20 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 21 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 22 H -0.26 -11.41 7.11 99.48 0.71 -10.70 16 23 C -0.10 -3.13 4.91 -19.87 -0.10 -3.23 16 24 C -0.12 -3.26 9.32 22.27 0.21 -3.05 16 25 C -0.12 -2.86 10.05 22.27 0.22 -2.63 16 26 C -0.12 -2.63 10.05 22.27 0.22 -2.40 16 27 C -0.12 -2.87 10.05 22.27 0.22 -2.65 16 28 C -0.12 -3.62 9.67 22.27 0.22 -3.40 16 29 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.13 1.18 8.14 -2.39 -0.02 1.16 16 32 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 33 H 0.10 2.40 7.42 -2.39 -0.02 2.39 16 34 H 0.08 2.21 7.89 -2.38 -0.02 2.19 16 35 H 0.44 9.75 8.93 -213.33 -1.90 7.85 16 36 H 0.40 12.72 6.88 -92.71 -0.64 12.08 16 37 H 0.07 2.70 8.14 -2.39 -0.02 2.68 16 38 H 0.06 2.37 8.14 -2.38 -0.02 2.35 16 39 H 0.01 0.32 7.75 -2.39 -0.02 0.30 16 40 H -0.02 -0.86 8.14 -2.39 -0.02 -0.88 16 41 H 0.26 14.50 8.31 -92.71 -0.77 13.73 16 42 H 0.11 3.07 7.73 -2.91 -0.02 3.05 16 43 H 0.14 2.46 8.06 -2.91 -0.02 2.43 16 44 H 0.15 2.14 8.06 -2.91 -0.02 2.12 16 45 H 0.14 2.56 8.06 -2.91 -0.02 2.54 16 46 H 0.12 3.42 8.04 -2.91 -0.02 3.39 16 Total: -1.00 -71.16 395.77 3.26 -67.90 By element: Atomic # 1 Polarization: 34.47 SS G_CDS: -1.54 Total: 32.93 kcal Atomic # 6 Polarization: 2.23 SS G_CDS: 7.16 Total: 9.39 kcal Atomic # 7 Polarization: -101.18 SS G_CDS: -4.06 Total: -105.24 kcal Atomic # 8 Polarization: -49.75 SS G_CDS: -0.32 Total: -50.07 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 2.03 Total: 45.09 kcal Total: -71.16 3.26 -67.90 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000875617226.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.720 kcal (2) G-P(sol) polarization free energy of solvation -71.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds