Wall clock time and date at job start Tue Mar 31 2020 18:55:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34778 * 120.00303 * 2 1 4 4 O 1.21284 * 119.99841 * 359.97438 * 3 2 1 5 5 C 1.50700 * 120.00097 * 179.97438 * 3 2 1 6 6 N 1.46898 * 109.46921 * 183.51285 * 5 3 2 7 7 C 1.46902 * 111.00331 * 296.42658 * 6 5 3 8 8 C 1.50693 * 109.46924 * 287.13214 * 7 6 5 9 9 O 1.21277 * 120.00124 * 4.33351 * 8 7 6 10 10 N 1.34780 * 119.99598 * 184.32421 * 8 7 6 11 11 C 1.46502 * 119.99688 * 180.02562 * 10 8 7 12 12 C 1.46908 * 111.00046 * 60.38091 * 6 5 3 13 13 C 1.50701 * 109.46708 * 66.04413 * 12 6 5 14 14 C 1.38302 * 119.93129 * 90.00446 * 13 12 6 15 15 C 1.38099 * 120.06737 * 179.97438 * 14 13 12 16 16 C 1.38878 * 119.93535 * 0.02562 * 15 14 13 17 17 O 1.35752 * 120.07336 * 180.02562 * 16 15 14 18 18 C 1.34832 * 116.99475 * 5.63500 * 17 16 15 19 19 H 1.07995 * 120.00346 * 354.93062 * 18 17 16 20 20 C 1.38663 * 119.99581 * 174.93754 * 18 17 16 21 21 N 1.31556 * 119.99625 * 179.97438 * 20 18 17 22 22 Si 1.86803 * 120.00009 * 359.97438 * 20 18 17 23 23 H 1.48502 * 109.46685 * 90.00215 * 22 20 18 24 24 H 1.48501 * 109.46898 * 210.00328 * 22 20 18 25 25 H 1.48503 * 109.47221 * 330.00378 * 22 20 18 26 26 C 1.38883 * 119.85677 * 0.27764 * 16 15 14 27 27 C 1.38097 * 119.93279 * 359.40173 * 26 16 15 28 28 H 1.09000 * 109.47008 * 300.00068 * 1 2 3 29 29 H 1.09003 * 109.47132 * 60.00167 * 1 2 3 30 30 H 1.09000 * 109.47384 * 179.97438 * 1 2 3 31 31 H 0.97003 * 119.99789 * 180.02562 * 2 1 3 32 32 H 1.08999 * 109.47157 * 63.51528 * 5 3 2 33 33 H 1.09001 * 109.46763 * 303.51247 * 5 3 2 34 34 H 1.09004 * 109.46850 * 47.13842 * 7 6 5 35 35 H 1.09000 * 109.46935 * 167.12928 * 7 6 5 36 36 H 0.96994 * 120.00520 * 0.02562 * 10 8 7 37 37 H 1.08998 * 109.47459 * 300.00558 * 11 10 8 38 38 H 1.09000 * 109.47126 * 60.00433 * 11 10 8 39 39 H 1.09004 * 109.46983 * 180.02562 * 11 10 8 40 40 H 1.09002 * 109.47025 * 306.04692 * 12 6 5 41 41 H 1.08996 * 109.47362 * 186.03923 * 12 6 5 42 42 H 1.07995 * 119.96535 * 359.97438 * 14 13 12 43 43 H 1.08007 * 120.03448 * 180.02562 * 15 14 13 44 44 H 0.97006 * 119.99619 * 179.97438 * 21 20 18 45 45 H 1.08002 * 120.02912 * 179.72355 * 26 16 15 46 46 H 1.08001 * 119.96700 * 180.31797 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5325 2.2175 -0.0005 5 6 3.6459 1.1671 0.0006 6 7 4.1356 2.5495 0.0853 7 6 3.7361 3.3230 -1.0979 8 6 4.5529 2.8826 -2.2852 9 8 5.3297 1.9575 -2.1773 10 7 4.4201 3.5168 -3.4670 11 6 5.2139 3.0882 -4.6215 12 6 3.6715 3.1977 1.3193 13 6 4.3009 2.5207 2.5095 14 6 5.5117 2.9739 3.0007 15 6 6.0908 2.3560 4.0916 16 6 5.4563 1.2781 4.6952 17 8 6.0227 0.6689 5.7680 18 6 7.1412 1.2298 6.2704 19 1 7.5925 2.0747 5.7716 20 6 7.7119 0.7217 7.4275 21 7 8.8035 1.2687 7.9174 22 14 6.9309 -0.7393 8.2905 23 1 7.5055 -1.9979 7.7510 24 1 7.2021 -0.6561 9.7481 25 1 5.4642 -0.7253 8.0583 26 6 4.2436 0.8214 4.1956 27 6 3.6663 1.4477 3.1086 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.9500 -0.8401 -0.0004 32 1 4.0096 0.7086 -0.9190 33 1 4.0089 0.5999 0.8577 34 1 2.6786 3.1550 -1.3018 35 1 3.9063 4.3837 -0.9130 36 1 3.7991 4.2568 -3.5533 37 1 6.2744 3.1839 -4.3889 38 1 4.9852 2.0481 -4.8536 39 1 4.9727 3.7141 -5.4807 40 1 2.5866 3.1162 1.3866 41 1 3.9569 4.2495 1.3067 42 1 6.0049 3.8119 2.5307 43 1 7.0362 2.7106 4.4750 44 1 9.2025 0.9135 8.7271 45 1 3.7499 -0.0194 4.6601 46 1 2.7208 1.0963 2.7228 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000880151980.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:55:00 Heat of formation + Delta-G solvation = -48.080393 kcal Electronic energy + Delta-G solvation = -29078.414173 eV Core-core repulsion = 24969.875517 eV Total energy + Delta-G solvation = -4108.538656 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.72207 -39.39482 -39.09221 -37.22912 -35.82134 -34.76537 -34.55018 -32.38631 -30.59889 -30.28972 -29.63640 -27.93741 -26.16860 -25.93792 -24.80506 -22.67609 -21.98840 -20.92271 -20.51677 -20.15942 -17.98555 -17.81562 -17.14738 -16.92915 -16.46869 -16.34242 -15.73477 -15.49441 -14.95073 -14.90323 -14.78022 -14.50985 -13.98156 -13.93604 -13.71220 -13.48018 -13.36302 -13.20370 -13.03052 -12.60751 -12.54667 -12.54150 -12.42673 -12.18525 -11.86466 -11.61130 -11.25728 -11.22224 -10.81375 -10.72782 -10.62148 -10.54480 -10.12586 -9.88253 -9.35883 -9.34110 -9.29405 -8.84597 -8.21845 -8.12282 -7.27025 -6.39004 -4.05382 2.14962 2.20616 2.40187 2.60319 2.96595 3.08078 3.24164 3.26666 3.41292 3.99484 4.25547 4.58085 4.65226 4.66128 4.87395 4.98541 4.99770 5.07228 5.15018 5.17399 5.23753 5.25631 5.42828 5.47873 5.49278 5.52685 5.53910 5.68020 5.72574 5.87875 5.97702 6.17063 6.18017 6.20763 6.37538 6.60930 6.75681 6.86258 6.94193 7.09240 7.23436 7.30343 7.32353 7.39059 7.64955 7.83880 7.99384 8.06889 8.14063 8.96319 9.59042 10.68750 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.014302 B = 0.002798 C = 0.002490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1957.287959 B =10004.137989 C =11242.284535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.735 5.735 3 C 0.483 3.517 4 O -0.544 6.544 5 C 0.029 3.971 6 N -0.487 5.487 7 C 0.019 3.981 8 C 0.510 3.490 9 O -0.521 6.521 10 N -0.743 5.743 11 C 0.089 3.911 12 C 0.094 3.906 13 C -0.168 4.168 14 C -0.049 4.049 15 C -0.220 4.220 16 C 0.162 3.838 17 O -0.218 6.218 18 C -0.388 4.388 19 H 0.107 0.893 20 C 0.063 3.937 21 N -0.880 5.880 22 Si 0.905 3.095 23 H -0.274 1.274 24 H -0.283 1.283 25 H -0.260 1.260 26 C -0.193 4.193 27 C -0.072 4.072 28 H 0.060 0.940 29 H 0.056 0.944 30 H 0.073 0.927 31 H 0.404 0.596 32 H 0.114 0.886 33 H 0.116 0.884 34 H 0.093 0.907 35 H 0.101 0.899 36 H 0.400 0.600 37 H 0.059 0.941 38 H 0.057 0.943 39 H 0.072 0.928 40 H 0.068 0.932 41 H 0.075 0.925 42 H 0.110 0.890 43 H 0.133 0.867 44 H 0.279 0.721 45 H 0.115 0.885 46 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.940 1.626 -22.406 26.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.388 5.388 3 C 0.270 3.730 4 O -0.423 6.423 5 C -0.102 4.102 6 N -0.208 5.208 7 C -0.112 4.112 8 C 0.296 3.704 9 O -0.396 6.396 10 N -0.396 5.396 11 C -0.055 4.055 12 C -0.032 4.032 13 C -0.169 4.169 14 C -0.068 4.068 15 C -0.239 4.239 16 C 0.109 3.891 17 O -0.124 6.124 18 C -0.464 4.464 19 H 0.124 0.876 20 C -0.140 4.140 21 N -0.518 5.518 22 Si 0.731 3.269 23 H -0.199 1.199 24 H -0.209 1.209 25 H -0.184 1.184 26 C -0.212 4.212 27 C -0.091 4.091 28 H 0.078 0.922 29 H 0.075 0.925 30 H 0.092 0.908 31 H 0.238 0.762 32 H 0.131 0.869 33 H 0.134 0.866 34 H 0.111 0.889 35 H 0.119 0.881 36 H 0.233 0.767 37 H 0.078 0.922 38 H 0.075 0.925 39 H 0.091 0.909 40 H 0.086 0.914 41 H 0.093 0.907 42 H 0.128 0.872 43 H 0.150 0.850 44 H 0.089 0.911 45 H 0.133 0.867 46 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -14.157 1.495 -21.996 26.201 hybrid contribution -1.020 -0.547 0.331 1.204 sum -15.177 0.948 -21.665 26.469 Atomic orbital electron populations 1.21521 0.80060 1.02121 1.02146 1.46050 1.07741 1.09248 1.75722 1.22495 0.92165 0.83603 0.74741 1.90583 1.70889 1.30869 1.49918 1.22509 0.87511 0.93752 1.06465 1.62091 1.57322 1.00385 1.01015 1.22224 0.99400 0.99710 0.89830 1.20880 0.82972 0.82651 0.83856 1.90690 1.36572 1.28551 1.83739 1.45825 1.45330 1.37561 1.10921 1.21486 0.96215 1.00421 0.87356 1.21171 0.98964 0.97119 0.85930 1.19162 0.97830 1.00582 0.99370 1.20642 0.93679 0.98064 0.94416 1.21289 1.02987 0.99984 0.99684 1.19117 0.91386 0.90898 0.87663 1.83565 1.39986 1.48992 1.39808 1.20781 0.99973 1.16304 1.09315 0.87584 1.24468 0.95463 0.98530 0.95566 1.69651 1.19086 1.40854 1.22238 0.86182 0.80846 0.81755 0.78115 1.19902 1.20857 1.18397 1.20129 0.95928 1.04330 1.00817 1.20430 0.98082 0.95341 0.95276 0.92178 0.92513 0.90790 0.76242 0.86851 0.86598 0.88925 0.88087 0.76672 0.92213 0.92477 0.90918 0.91402 0.90699 0.87170 0.84976 0.91087 0.86736 0.87869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.64 10.70 59.85 0.64 1.28 16 2 N -0.74 -6.50 5.71 -67.08 -0.38 -6.88 16 3 C 0.48 5.67 6.54 -10.98 -0.07 5.60 16 4 O -0.54 -7.55 11.72 5.55 0.07 -7.48 16 5 C 0.03 0.37 5.12 -4.98 -0.03 0.34 16 6 N -0.49 -6.63 4.35 -238.96 -1.04 -7.67 16 7 C 0.02 0.22 5.15 -4.98 -0.03 0.19 16 8 C 0.51 5.98 7.62 -10.99 -0.08 5.90 16 9 O -0.52 -8.14 14.71 5.56 0.08 -8.05 16 10 N -0.74 -5.98 5.71 -67.08 -0.38 -6.36 16 11 C 0.09 0.63 10.70 59.85 0.64 1.27 16 12 C 0.09 1.35 4.80 -4.97 -0.02 1.32 16 13 C -0.17 -2.85 4.89 -104.57 -0.51 -3.36 16 14 C -0.05 -0.92 9.69 -39.61 -0.38 -1.30 16 15 C -0.22 -4.83 9.17 -39.40 -0.36 -5.19 16 16 C 0.16 3.76 6.65 -39.11 -0.26 3.50 16 17 O -0.22 -5.81 8.59 0.04 0.00 -5.81 16 18 C -0.39 -11.04 9.95 30.89 0.31 -10.73 16 19 H 0.11 3.09 5.44 -52.49 -0.29 2.80 16 20 C 0.06 1.78 5.49 -17.51 -0.10 1.68 16 21 N -0.88 -25.67 13.96 55.48 0.77 -24.90 16 22 Si 0.91 21.83 28.62 -169.99 -4.86 16.96 16 23 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 24 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 25 H -0.26 -6.27 7.11 56.52 0.40 -5.87 16 26 C -0.19 -3.82 9.99 -39.39 -0.39 -4.21 16 27 C -0.07 -1.24 7.95 -39.61 -0.31 -1.55 16 28 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.40 2.64 8.83 -40.82 -0.36 2.28 16 32 H 0.11 1.43 6.31 -51.93 -0.33 1.11 16 33 H 0.12 1.56 6.14 -51.93 -0.32 1.24 16 34 H 0.09 1.04 5.42 -51.93 -0.28 0.76 16 35 H 0.10 0.95 7.79 -51.93 -0.40 0.54 16 36 H 0.40 2.02 8.83 -40.82 -0.36 1.66 16 37 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 40 H 0.07 1.01 5.35 -51.93 -0.28 0.74 16 41 H 0.07 0.99 7.79 -51.93 -0.40 0.59 16 42 H 0.11 1.84 8.06 -52.49 -0.42 1.42 16 43 H 0.13 3.06 5.64 -52.48 -0.30 2.76 16 44 H 0.28 7.51 8.31 -40.82 -0.34 7.17 16 45 H 0.11 2.12 8.06 -52.49 -0.42 1.69 16 46 H 0.10 1.55 7.52 -52.49 -0.39 1.16 16 LS Contribution 377.44 15.07 5.69 5.69 Total: -1.00 -34.73 377.44 -7.25 -41.98 By element: Atomic # 1 Polarization: 14.03 SS G_CDS: -6.23 Total: 7.80 kcal Atomic # 6 Polarization: -4.32 SS G_CDS: -0.96 Total: -5.28 kcal Atomic # 7 Polarization: -44.78 SS G_CDS: -1.03 Total: -45.81 kcal Atomic # 8 Polarization: -21.49 SS G_CDS: 0.15 Total: -21.34 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -4.86 Total: 16.96 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -34.73 -7.25 -41.98 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880151980.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.102 kcal (2) G-P(sol) polarization free energy of solvation -34.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.978 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds