Wall clock time and date at job start Tue Mar 31 2020 18:54:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34778 * 120.00303 * 2 1 4 4 O 1.21284 * 119.99841 * 359.97438 * 3 2 1 5 5 C 1.50700 * 120.00097 * 179.97438 * 3 2 1 6 6 N 1.46898 * 109.46921 * 183.51285 * 5 3 2 7 7 C 1.46902 * 111.00331 * 296.42658 * 6 5 3 8 8 C 1.50693 * 109.46924 * 287.13214 * 7 6 5 9 9 O 1.21277 * 120.00124 * 4.33351 * 8 7 6 10 10 N 1.34780 * 119.99598 * 184.32421 * 8 7 6 11 11 C 1.46502 * 119.99688 * 180.02562 * 10 8 7 12 12 C 1.46908 * 111.00046 * 60.38091 * 6 5 3 13 13 C 1.50701 * 109.46708 * 66.04413 * 12 6 5 14 14 C 1.38302 * 119.93129 * 90.00446 * 13 12 6 15 15 C 1.38099 * 120.06737 * 179.97438 * 14 13 12 16 16 C 1.38878 * 119.93535 * 0.02562 * 15 14 13 17 17 O 1.35752 * 120.07336 * 180.02562 * 16 15 14 18 18 C 1.34832 * 116.99475 * 5.63500 * 17 16 15 19 19 H 1.07995 * 120.00346 * 354.93062 * 18 17 16 20 20 C 1.38663 * 119.99581 * 174.93754 * 18 17 16 21 21 N 1.31556 * 119.99625 * 179.97438 * 20 18 17 22 22 Si 1.86803 * 120.00009 * 359.97438 * 20 18 17 23 23 H 1.48502 * 109.46685 * 90.00215 * 22 20 18 24 24 H 1.48501 * 109.46898 * 210.00328 * 22 20 18 25 25 H 1.48503 * 109.47221 * 330.00378 * 22 20 18 26 26 C 1.38883 * 119.85677 * 0.27764 * 16 15 14 27 27 C 1.38097 * 119.93279 * 359.40173 * 26 16 15 28 28 H 1.09000 * 109.47008 * 300.00068 * 1 2 3 29 29 H 1.09003 * 109.47132 * 60.00167 * 1 2 3 30 30 H 1.09000 * 109.47384 * 179.97438 * 1 2 3 31 31 H 0.97003 * 119.99789 * 180.02562 * 2 1 3 32 32 H 1.08999 * 109.47157 * 63.51528 * 5 3 2 33 33 H 1.09001 * 109.46763 * 303.51247 * 5 3 2 34 34 H 1.09004 * 109.46850 * 47.13842 * 7 6 5 35 35 H 1.09000 * 109.46935 * 167.12928 * 7 6 5 36 36 H 0.96994 * 120.00520 * 0.02562 * 10 8 7 37 37 H 1.08998 * 109.47459 * 300.00558 * 11 10 8 38 38 H 1.09000 * 109.47126 * 60.00433 * 11 10 8 39 39 H 1.09004 * 109.46983 * 180.02562 * 11 10 8 40 40 H 1.09002 * 109.47025 * 306.04692 * 12 6 5 41 41 H 1.08996 * 109.47362 * 186.03923 * 12 6 5 42 42 H 1.07995 * 119.96535 * 359.97438 * 14 13 12 43 43 H 1.08007 * 120.03448 * 180.02562 * 15 14 13 44 44 H 0.97006 * 119.99619 * 179.97438 * 21 20 18 45 45 H 1.08002 * 120.02912 * 179.72355 * 26 16 15 46 46 H 1.08001 * 119.96700 * 180.31797 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5325 2.2175 -0.0005 5 6 3.6459 1.1671 0.0006 6 7 4.1356 2.5495 0.0853 7 6 3.7361 3.3230 -1.0979 8 6 4.5529 2.8826 -2.2852 9 8 5.3297 1.9575 -2.1773 10 7 4.4201 3.5168 -3.4670 11 6 5.2139 3.0882 -4.6215 12 6 3.6715 3.1977 1.3193 13 6 4.3009 2.5207 2.5095 14 6 5.5117 2.9739 3.0007 15 6 6.0908 2.3560 4.0916 16 6 5.4563 1.2781 4.6952 17 8 6.0227 0.6689 5.7680 18 6 7.1412 1.2298 6.2704 19 1 7.5925 2.0747 5.7716 20 6 7.7119 0.7217 7.4275 21 7 8.8035 1.2687 7.9174 22 14 6.9309 -0.7393 8.2905 23 1 7.5055 -1.9979 7.7510 24 1 7.2021 -0.6561 9.7481 25 1 5.4642 -0.7253 8.0583 26 6 4.2436 0.8214 4.1956 27 6 3.6663 1.4477 3.1086 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.9500 -0.8401 -0.0004 32 1 4.0096 0.7086 -0.9190 33 1 4.0089 0.5999 0.8577 34 1 2.6786 3.1550 -1.3018 35 1 3.9063 4.3837 -0.9130 36 1 3.7991 4.2568 -3.5533 37 1 6.2744 3.1839 -4.3889 38 1 4.9852 2.0481 -4.8536 39 1 4.9727 3.7141 -5.4807 40 1 2.5866 3.1162 1.3866 41 1 3.9569 4.2495 1.3067 42 1 6.0049 3.8119 2.5307 43 1 7.0362 2.7106 4.4750 44 1 9.2025 0.9135 8.7271 45 1 3.7499 -0.0194 4.6601 46 1 2.7208 1.0963 2.7228 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000880151980.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:54:59 Heat of formation + Delta-G solvation = -76.132378 kcal Electronic energy + Delta-G solvation = -29079.630598 eV Core-core repulsion = 24969.875517 eV Total energy + Delta-G solvation = -4109.755082 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.71576 -40.78858 -40.25751 -38.71526 -37.01805 -35.57777 -35.42232 -34.45363 -32.05626 -31.79534 -30.57497 -28.95741 -27.60412 -26.71493 -26.32842 -23.88861 -23.54973 -22.04388 -21.52912 -21.24082 -19.82999 -19.14425 -18.69919 -17.81574 -17.37464 -17.22260 -16.70997 -16.52184 -16.33760 -16.22045 -15.90717 -15.65039 -15.56122 -15.42886 -15.30650 -14.70235 -14.35933 -14.28337 -14.15661 -14.07029 -14.01987 -13.81075 -13.10644 -13.07196 -13.03547 -12.86557 -12.74185 -12.45926 -12.40877 -12.23436 -12.21711 -11.89700 -11.51236 -11.26262 -10.90306 -10.85698 -10.11144 -10.05744 -9.79309 -9.21790 -8.91237 -8.48907 -6.21499 0.55866 0.61733 1.31965 1.36677 1.49418 1.52388 1.71310 2.17971 2.28896 2.31629 2.74096 2.98246 3.12095 3.27648 3.84182 3.91229 3.94087 4.05706 4.15265 4.27190 4.37700 4.47063 4.48240 4.50684 4.57922 4.58778 4.63546 4.64756 4.70420 4.81359 4.84721 4.94473 4.96912 5.00492 5.25056 5.37994 5.44861 5.50186 5.55601 5.74478 5.79796 5.89294 5.91454 5.96178 6.24277 6.48496 6.62211 6.85298 7.16869 7.34116 7.59396 8.62838 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.014302 B = 0.002798 C = 0.002490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1957.287959 B =10004.137989 C =11242.284535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.725 5.725 3 C 0.484 3.516 4 O -0.565 6.565 5 C 0.033 3.967 6 N -0.504 5.504 7 C 0.025 3.975 8 C 0.508 3.492 9 O -0.567 6.567 10 N -0.727 5.727 11 C 0.086 3.914 12 C 0.101 3.899 13 C -0.144 4.144 14 C -0.052 4.052 15 C -0.235 4.235 16 C 0.123 3.877 17 O -0.244 6.244 18 C -0.399 4.399 19 H 0.080 0.920 20 C 0.009 3.991 21 N -0.925 5.925 22 Si 0.972 3.028 23 H -0.266 1.266 24 H -0.268 1.268 25 H -0.261 1.261 26 C -0.187 4.187 27 C -0.061 4.061 28 H 0.050 0.950 29 H 0.053 0.947 30 H 0.104 0.896 31 H 0.416 0.584 32 H 0.111 0.889 33 H 0.106 0.894 34 H 0.097 0.903 35 H 0.121 0.879 36 H 0.417 0.583 37 H 0.045 0.955 38 H 0.048 0.952 39 H 0.110 0.890 40 H 0.070 0.930 41 H 0.090 0.910 42 H 0.131 0.869 43 H 0.107 0.893 44 H 0.284 0.716 45 H 0.130 0.870 46 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.916 1.400 -24.635 30.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.377 5.377 3 C 0.271 3.729 4 O -0.446 6.446 5 C -0.099 4.099 6 N -0.226 5.226 7 C -0.105 4.105 8 C 0.294 3.706 9 O -0.446 6.446 10 N -0.381 5.381 11 C -0.058 4.058 12 C -0.025 4.025 13 C -0.145 4.145 14 C -0.071 4.071 15 C -0.254 4.254 16 C 0.074 3.926 17 O -0.151 6.151 18 C -0.475 4.475 19 H 0.097 0.903 20 C -0.189 4.189 21 N -0.565 5.565 22 Si 0.794 3.206 23 H -0.190 1.190 24 H -0.193 1.193 25 H -0.186 1.186 26 C -0.206 4.206 27 C -0.079 4.079 28 H 0.068 0.932 29 H 0.072 0.928 30 H 0.123 0.877 31 H 0.251 0.749 32 H 0.129 0.871 33 H 0.124 0.876 34 H 0.114 0.886 35 H 0.139 0.861 36 H 0.253 0.747 37 H 0.064 0.936 38 H 0.067 0.933 39 H 0.128 0.872 40 H 0.088 0.912 41 H 0.109 0.891 42 H 0.149 0.851 43 H 0.125 0.875 44 H 0.094 0.906 45 H 0.148 0.852 46 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -17.183 1.287 -24.295 29.785 hybrid contribution -0.275 -0.345 0.648 0.784 sum -17.458 0.942 -23.647 29.408 Atomic orbital electron populations 1.21657 0.78833 1.04027 1.01489 1.46004 1.08559 1.08987 1.74162 1.22220 0.91682 0.84093 0.74945 1.90571 1.71053 1.31731 1.51280 1.22395 0.88422 0.93177 1.05890 1.61976 1.58046 1.01043 1.01501 1.22237 0.99298 1.00369 0.88629 1.21026 0.82447 0.82231 0.84884 1.90676 1.38671 1.30657 1.84581 1.45734 1.44999 1.37224 1.10125 1.21616 0.95292 1.00868 0.87988 1.21106 0.98651 0.97633 0.85123 1.19592 0.96387 0.99287 0.99243 1.20868 0.94360 0.98452 0.93384 1.21281 1.02532 1.00562 1.01052 1.19628 0.93028 0.92201 0.87759 1.83507 1.39851 1.50070 1.41710 1.20710 1.00987 1.16038 1.09757 0.90259 1.25302 0.96000 1.01419 0.96213 1.69738 1.20692 1.42842 1.23277 0.85198 0.79553 0.78294 0.77548 1.19045 1.19277 1.18564 1.20418 0.94553 1.04560 1.01077 1.20730 0.98774 0.94553 0.93865 0.93150 0.92813 0.87696 0.74854 0.87107 0.87632 0.88559 0.86059 0.74664 0.93619 0.93343 0.87182 0.91169 0.89128 0.85103 0.87492 0.90591 0.85238 0.84799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.00 10.70 127.77 1.37 2.37 16 2 N -0.73 -10.70 5.71 -484.52 -2.77 -13.47 16 3 C 0.48 10.09 6.54 87.66 0.57 10.67 16 4 O -0.57 -14.09 11.72 -3.04 -0.04 -14.13 16 5 C 0.03 0.76 5.12 85.56 0.44 1.20 16 6 N -0.50 -12.58 4.35 -909.93 -3.96 -16.54 16 7 C 0.03 0.49 5.15 85.55 0.44 0.93 16 8 C 0.51 10.99 7.62 87.65 0.67 11.66 16 9 O -0.57 -17.31 14.71 -3.02 -0.04 -17.36 16 10 N -0.73 -9.95 5.71 -484.52 -2.77 -12.72 16 11 C 0.09 1.03 10.70 127.77 1.37 2.40 16 12 C 0.10 2.59 4.80 85.56 0.41 3.00 16 13 C -0.14 -4.58 4.89 -19.83 -0.10 -4.68 16 14 C -0.05 -1.91 9.69 22.25 0.22 -1.69 16 15 C -0.24 -10.69 9.17 22.39 0.21 -10.48 16 16 C 0.12 5.85 6.65 22.58 0.15 6.00 16 17 O -0.24 -13.43 8.59 -22.78 -0.20 -13.63 16 18 C -0.40 -23.92 9.95 67.92 0.68 -23.24 16 19 H 0.08 5.01 5.44 -2.91 -0.02 4.99 16 20 C 0.01 0.52 5.49 84.84 0.47 0.98 16 21 N -0.92 -56.13 13.96 21.62 0.30 -55.83 16 22 Si 0.97 45.94 28.62 68.60 1.96 47.90 16 23 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 24 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 25 H -0.26 -12.26 7.11 99.48 0.71 -11.55 16 26 C -0.19 -7.21 9.99 22.39 0.22 -6.99 16 27 C -0.06 -1.93 7.95 22.25 0.18 -1.75 16 28 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 29 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.10 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.42 4.22 8.83 -92.71 -0.82 3.40 16 32 H 0.11 2.67 6.31 -2.39 -0.02 2.66 16 33 H 0.11 2.63 6.14 -2.39 -0.01 2.61 16 34 H 0.10 1.90 5.42 -2.39 -0.01 1.88 16 35 H 0.12 1.87 7.79 -2.39 -0.02 1.85 16 36 H 0.42 2.87 8.83 -92.71 -0.82 2.05 16 37 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 38 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 39 H 0.11 0.49 8.14 -2.39 -0.02 0.47 16 40 H 0.07 1.85 5.35 -2.39 -0.01 1.84 16 41 H 0.09 2.08 7.79 -2.39 -0.02 2.06 16 42 H 0.13 4.21 8.06 -2.91 -0.02 4.19 16 43 H 0.11 5.36 5.64 -2.91 -0.02 5.35 16 44 H 0.28 15.81 8.31 -92.70 -0.77 15.04 16 45 H 0.13 4.56 8.06 -2.91 -0.02 4.54 16 46 H 0.13 3.51 7.52 -2.91 -0.02 3.49 16 Total: -1.00 -78.86 377.44 -0.82 -79.68 By element: Atomic # 1 Polarization: 26.30 SS G_CDS: -0.60 Total: 25.71 kcal Atomic # 6 Polarization: -16.90 SS G_CDS: 7.28 Total: -9.62 kcal Atomic # 7 Polarization: -89.37 SS G_CDS: -9.19 Total: -98.56 kcal Atomic # 8 Polarization: -44.84 SS G_CDS: -0.28 Total: -45.12 kcal Atomic # 14 Polarization: 45.94 SS G_CDS: 1.96 Total: 47.90 kcal Total: -78.86 -0.82 -79.68 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880151980.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.546 kcal (2) G-P(sol) polarization free energy of solvation -78.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds