Wall clock time and date at job start Tue Mar 31 2020 19:15:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35850 * 116.99436 * 2 1 4 4 C 1.39294 * 120.83664 * 359.97438 * 3 2 1 5 5 C 1.37891 * 119.27446 * 180.02562 * 4 3 2 6 6 N 1.32066 * 121.00234 * 0.25684 * 5 4 3 7 7 C 1.32263 * 121.83246 * 359.47429 * 6 5 4 8 8 O 1.35773 * 119.69343 * 180.27118 * 7 6 5 9 9 C 1.42902 * 117.00010 * 0.25167 * 8 7 6 10 10 C 1.39192 * 120.61434 * 0.52564 * 7 6 5 11 11 N 1.40437 * 120.52603 * 179.77195 * 10 7 6 12 12 C 1.34774 * 120.00141 * 88.97411 * 11 10 7 13 13 O 1.21595 * 119.99976 * 4.69057 * 12 11 10 14 14 N 1.34782 * 119.99861 * 184.68653 * 12 11 10 15 15 C 1.46494 * 120.00004 * 180.02562 * 14 12 11 16 16 H 1.08999 * 110.01718 * 325.06452 * 15 14 12 17 17 C 1.53873 * 110.03666 * 86.45473 * 15 14 12 18 18 C 1.54262 * 106.60230 * 119.28227 * 17 15 14 19 19 C 1.54896 * 104.19162 * 23.61300 * 18 17 15 20 20 H 1.08997 * 110.75141 * 80.55821 * 19 18 17 21 21 C 1.50704 * 110.75267 * 203.73944 * 19 18 17 22 22 H 1.08001 * 119.99483 * 118.55003 * 21 19 18 23 23 C 1.37870 * 120.00416 * 298.55019 * 21 19 18 24 24 N 1.31516 * 119.99896 * 359.97438 * 23 21 19 25 25 Si 1.86803 * 120.00126 * 180.02562 * 23 21 19 26 26 H 1.48497 * 109.47068 * 59.99473 * 25 23 21 27 27 H 1.48503 * 109.47058 * 180.02562 * 25 23 21 28 28 H 1.48504 * 109.46840 * 299.99398 * 25 23 21 29 29 C 1.54263 * 110.03187 * 203.62497 * 15 14 12 30 30 H 1.09003 * 109.47274 * 60.00060 * 1 2 3 31 31 H 1.09005 * 109.46837 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47178 * 299.99935 * 1 2 3 33 33 H 1.08003 * 120.36157 * 0.04296 * 4 3 2 34 34 H 1.08000 * 119.49924 * 179.97438 * 5 4 3 35 35 H 1.09004 * 109.46617 * 300.00223 * 9 8 7 36 36 H 1.09001 * 109.47144 * 59.99877 * 9 8 7 37 37 H 1.08996 * 109.46942 * 180.02562 * 9 8 7 38 38 H 0.96997 * 119.99443 * 268.97003 * 11 10 7 39 39 H 0.96994 * 119.99654 * 0.02562 * 14 12 11 40 40 H 1.09000 * 110.03693 * 238.57191 * 17 15 14 41 41 H 1.09009 * 110.03005 * 359.97438 * 17 15 14 42 42 H 1.08998 * 110.48904 * 142.28794 * 18 17 15 43 43 H 1.08997 * 110.48848 * 264.93704 * 18 17 15 44 44 H 0.97003 * 119.99810 * 180.02562 * 24 23 21 45 45 H 1.09000 * 110.48930 * 335.77721 * 29 15 14 46 46 H 1.09000 * 110.49101 * 98.42695 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0456 1.2105 0.0000 4 6 1.3040 2.3896 -0.0005 5 6 1.9631 3.6007 -0.0011 6 7 3.2826 3.6571 -0.0061 7 6 4.0275 2.5642 -0.0006 8 8 5.3809 2.6728 -0.0006 9 6 5.9258 3.9939 -0.0011 10 6 3.4370 1.3038 -0.0001 11 7 4.2298 0.1446 0.0010 12 6 4.6269 -0.3991 1.1685 13 8 4.2294 0.0628 2.2207 14 7 5.4646 -1.4550 1.1697 15 6 5.8959 -2.0464 2.4386 16 1 6.0052 -1.2688 3.1946 17 6 4.8721 -3.0957 2.9061 18 6 5.6233 -4.4410 2.9824 19 6 7.1084 -4.0372 3.1579 20 1 7.3194 -3.7831 4.1966 21 6 8.0209 -5.1389 2.6837 22 1 8.7043 -4.9598 1.8668 23 6 7.9833 -6.3752 3.2927 24 7 7.1515 -6.5931 4.2878 25 14 9.1149 -7.7405 2.7053 26 1 10.5284 -7.3101 2.8539 27 1 8.8806 -8.9614 3.5176 28 1 8.8348 -8.0355 1.2771 29 6 7.2335 -2.7905 2.2473 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 0.2245 2.3555 -0.0003 34 1 1.3917 4.5172 -0.0019 35 1 5.5892 4.5252 -0.8914 36 1 5.5893 4.5261 0.8886 37 1 7.0143 3.9379 -0.0015 38 1 4.4914 -0.2647 -0.8386 39 1 5.7819 -1.8233 0.3303 40 1 4.4852 -2.8279 3.8893 41 1 4.0540 -3.1647 2.1890 42 1 5.2817 -5.0206 3.8400 43 1 5.4881 -5.0063 2.0604 44 1 7.1253 -7.4628 4.7165 45 1 7.3584 -3.0894 1.2065 46 1 8.0670 -2.1658 2.5683 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000881085743.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:15:06 Heat of formation + Delta-G solvation = -91.960980 kcal Electronic energy + Delta-G solvation = -29157.899893 eV Core-core repulsion = 25047.458432 eV Total energy + Delta-G solvation = -4110.441461 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.22878 -40.90701 -40.10244 -38.83707 -38.26930 -35.93760 -35.27685 -33.76818 -31.98233 -30.95587 -29.92801 -28.85003 -28.54324 -27.63722 -25.84751 -24.48541 -23.55573 -22.32530 -21.32758 -20.90677 -19.96424 -19.54871 -18.75887 -18.56764 -18.12297 -17.54887 -17.11081 -16.77788 -16.57795 -16.56954 -16.08620 -15.92772 -15.67041 -15.46174 -15.17167 -14.76200 -14.46973 -14.21471 -14.01355 -13.86899 -13.62456 -13.00826 -12.79767 -12.75608 -12.60454 -12.57393 -12.43180 -12.40558 -12.10720 -12.10465 -11.67828 -11.42171 -11.34331 -11.17238 -11.04569 -10.79964 -10.43749 -10.37563 -9.95485 -9.83071 -9.59985 -8.07370 -6.17955 -0.02854 0.22968 1.45081 1.46274 1.53619 1.62407 1.73674 2.11949 2.46808 2.53515 2.66104 3.19550 3.23177 3.41741 3.73186 3.93082 4.01316 4.06705 4.12492 4.22017 4.30312 4.36541 4.40732 4.43209 4.61660 4.70073 4.71279 4.77038 4.78219 4.93098 4.93698 5.04251 5.08206 5.15572 5.17552 5.30368 5.42616 5.46032 5.68086 5.69961 5.91064 5.98211 6.02123 6.12071 6.24166 6.39541 6.77925 6.92060 7.07632 7.49592 7.60753 9.00967 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.018799 B = 0.002546 C = 0.002337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1489.064310 B =10994.176300 C =11977.679306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.321 6.321 3 C 0.197 3.803 4 C -0.285 4.285 5 C 0.179 3.821 6 N -0.568 5.568 7 C 0.345 3.655 8 O -0.316 6.316 9 C 0.038 3.962 10 C 0.017 3.983 11 N -0.666 5.666 12 C 0.710 3.290 13 O -0.630 6.630 14 N -0.719 5.719 15 C 0.171 3.829 16 H 0.065 0.935 17 C -0.123 4.123 18 C -0.087 4.087 19 C 0.041 3.959 20 H 0.000 1.000 21 C -0.529 4.529 22 H 0.060 0.940 23 C 0.010 3.990 24 N -0.921 5.921 25 Si 0.954 3.046 26 H -0.271 1.271 27 H -0.289 1.289 28 H -0.269 1.269 29 C -0.105 4.105 30 H 0.085 0.915 31 H 0.114 0.886 32 H 0.068 0.932 33 H 0.180 0.820 34 H 0.207 0.793 35 H 0.070 0.930 36 H 0.054 0.946 37 H 0.116 0.884 38 H 0.415 0.585 39 H 0.409 0.591 40 H 0.047 0.953 41 H 0.058 0.942 42 H 0.038 0.962 43 H 0.039 0.961 44 H 0.259 0.741 45 H 0.076 0.924 46 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.647 20.970 -14.851 29.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.231 6.231 3 C 0.141 3.859 4 C -0.307 4.307 5 C 0.024 3.976 6 N -0.296 5.296 7 C 0.166 3.834 8 O -0.223 6.223 9 C -0.057 4.057 10 C -0.080 4.080 11 N -0.320 5.320 12 C 0.411 3.589 13 O -0.511 6.511 14 N -0.374 5.374 15 C 0.066 3.934 16 H 0.083 0.917 17 C -0.162 4.162 18 C -0.126 4.126 19 C 0.022 3.978 20 H 0.018 0.982 21 C -0.567 4.567 22 H 0.078 0.922 23 C -0.188 4.188 24 N -0.560 5.560 25 Si 0.780 3.220 26 H -0.196 1.196 27 H -0.214 1.214 28 H -0.194 1.194 29 C -0.143 4.143 30 H 0.103 0.897 31 H 0.132 0.868 32 H 0.087 0.913 33 H 0.197 0.803 34 H 0.224 0.776 35 H 0.088 0.912 36 H 0.073 0.927 37 H 0.134 0.866 38 H 0.253 0.747 39 H 0.246 0.754 40 H 0.066 0.934 41 H 0.077 0.923 42 H 0.057 0.943 43 H 0.057 0.943 44 H 0.068 0.932 45 H 0.094 0.906 46 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -13.317 21.591 -13.780 28.869 hybrid contribution 0.201 -1.871 -0.420 1.928 sum -13.116 19.721 -14.201 27.615 Atomic orbital electron populations 1.23517 0.75211 1.05938 1.03243 1.86132 1.24413 1.25811 1.86770 1.19553 0.90541 0.86387 0.89426 1.22405 1.03325 0.91087 1.13838 1.22969 0.87766 0.98990 0.87874 1.67519 1.09499 1.29325 1.23280 1.19965 0.84955 0.88653 0.89852 1.86279 1.15567 1.33404 1.87002 1.23091 0.99481 0.80452 1.02640 1.16586 0.87575 0.85035 1.18843 1.41720 1.55278 1.27569 1.07409 1.16093 0.79009 0.79976 0.83818 1.90857 1.62074 1.66150 1.32003 1.45148 1.49546 1.32609 1.10103 1.21341 0.93984 0.93732 0.84336 0.91654 1.22530 0.97756 0.95939 0.99989 1.22066 0.97050 0.94190 0.99266 1.19532 0.92813 0.91960 0.93507 0.98164 1.21448 1.21023 0.96772 1.17443 0.92212 1.25786 0.96959 1.01004 0.95072 1.70104 1.38210 1.23530 1.24136 0.85669 0.79479 0.78407 0.78423 1.19649 1.21441 1.19385 1.22552 0.94170 0.96400 1.01139 0.89654 0.86765 0.91323 0.80292 0.77604 0.91151 0.92685 0.86624 0.74683 0.75449 0.93369 0.92279 0.94288 0.94254 0.93211 0.90587 0.91997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.18 9.84 113.37 1.12 1.29 16 2 O -0.32 -7.38 10.30 -91.86 -0.95 -8.33 16 3 C 0.20 4.62 6.74 22.82 0.15 4.77 16 4 C -0.29 -4.48 9.10 22.44 0.20 -4.27 16 5 C 0.18 2.76 11.16 84.58 0.94 3.71 16 6 N -0.57 -12.70 9.21 -308.64 -2.84 -15.54 16 7 C 0.35 9.33 7.50 84.86 0.64 9.96 16 8 O -0.32 -8.50 10.23 -91.00 -0.93 -9.43 16 9 C 0.04 0.70 10.38 113.37 1.18 1.88 16 10 C 0.02 0.46 5.36 38.28 0.21 0.67 16 11 N -0.67 -18.71 4.85 -316.08 -1.53 -20.24 16 12 C 0.71 25.06 8.52 179.05 1.53 26.59 16 13 O -0.63 -27.97 16.00 -4.02 -0.06 -28.04 16 14 N -0.72 -23.34 5.00 -454.35 -2.27 -25.62 16 15 C 0.17 6.62 3.23 45.72 0.15 6.76 16 16 H 0.07 2.74 7.60 -2.39 -0.02 2.72 16 17 C -0.12 -5.13 6.58 31.32 0.21 -4.92 16 18 C -0.09 -4.22 5.57 31.67 0.18 -4.05 16 19 C 0.04 2.05 2.82 -10.24 -0.03 2.02 16 20 H 0.00 0.01 8.14 -2.39 -0.02 -0.01 16 21 C -0.53 -28.77 8.54 25.60 0.22 -28.55 16 22 H 0.06 3.12 7.78 -2.91 -0.02 3.10 16 23 C 0.01 0.58 5.33 84.65 0.45 1.03 16 24 N -0.92 -54.07 12.02 21.45 0.26 -53.81 16 25 Si 0.95 43.46 29.54 68.60 2.03 45.48 16 26 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 27 H -0.29 -13.06 7.11 99.48 0.71 -12.36 16 28 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 29 C -0.10 -4.20 5.94 31.67 0.19 -4.01 16 30 H 0.08 0.57 7.71 -2.39 -0.02 0.55 16 31 H 0.11 1.14 8.14 -2.38 -0.02 1.12 16 32 H 0.07 0.71 7.71 -2.39 -0.02 0.70 16 33 H 0.18 1.40 6.46 -2.91 -0.02 1.38 16 34 H 0.21 1.28 8.06 -2.91 -0.02 1.25 16 35 H 0.07 1.12 8.10 -2.39 -0.02 1.10 16 36 H 0.05 1.06 8.11 -2.39 -0.02 1.04 16 37 H 0.12 1.62 8.14 -2.39 -0.02 1.60 16 38 H 0.41 8.99 8.84 -92.71 -0.82 8.17 16 39 H 0.41 10.71 8.36 -92.71 -0.78 9.93 16 40 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 41 H 0.06 2.34 7.92 -2.38 -0.02 2.32 16 42 H 0.04 2.09 7.37 -2.39 -0.02 2.07 16 43 H 0.04 1.91 8.04 -2.39 -0.02 1.90 16 44 H 0.26 14.56 8.31 -92.71 -0.77 13.79 16 45 H 0.08 2.83 7.63 -2.39 -0.02 2.81 16 46 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 Total: -1.00 -77.85 383.81 0.44 -77.40 By element: Atomic # 1 Polarization: 25.81 SS G_CDS: -0.57 Total: 25.24 kcal Atomic # 6 Polarization: 5.56 SS G_CDS: 7.32 Total: 12.89 kcal Atomic # 7 Polarization: -108.82 SS G_CDS: -6.39 Total: -115.21 kcal Atomic # 8 Polarization: -43.85 SS G_CDS: -1.94 Total: -45.80 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.48 kcal Total: -77.85 0.44 -77.40 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881085743.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.557 kcal (2) G-P(sol) polarization free energy of solvation -77.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds