Wall clock time and date at job start Tue Mar 31 2020 19:07:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42899 * 114.00416 * 2 1 4 4 C 1.53001 * 109.49630 * 63.99618 * 3 2 1 5 5 O 1.42905 * 109.47302 * 59.68739 * 4 3 2 6 6 C 1.53040 * 109.52475 * 303.91800 * 3 2 1 7 7 C 1.53041 * 109.53580 * 301.39784 * 6 3 2 8 8 C 1.53195 * 109.31208 * 298.63160 * 7 6 3 9 9 N 1.46928 * 108.77536 * 54.63443 * 8 7 6 10 10 C 1.34774 * 120.62784 * 126.36761 * 9 8 7 11 11 O 1.21580 * 119.99828 * 186.93611 * 10 9 8 12 12 N 1.34778 * 120.00129 * 6.93946 * 10 9 8 13 13 C 1.39240 * 119.99870 * 173.40251 * 12 10 9 14 14 C 1.39691 * 119.57748 * 21.77428 * 13 12 10 15 15 C 1.38647 * 119.49536 * 179.97438 * 14 13 12 16 16 C 1.38353 * 118.66843 * 0.02562 * 15 14 13 17 17 C 1.40564 * 119.13537 * 359.97438 * 16 15 14 18 18 C 1.41335 * 119.79009 * 180.02562 * 17 16 15 19 19 H 1.08009 * 119.99782 * 0.02562 * 18 17 16 20 20 C 1.40020 * 120.00236 * 180.02562 * 18 17 16 21 21 N 1.30747 * 120.00283 * 0.02562 * 20 18 17 22 22 Si 1.86806 * 120.00010 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47180 * 60.00142 * 22 20 18 24 24 H 1.48506 * 109.47084 * 180.02562 * 22 20 18 25 25 H 1.48499 * 109.47235 * 299.99993 * 22 20 18 26 26 N 1.31907 * 119.57445 * 201.51048 * 13 12 10 27 27 C 1.46929 * 118.73897 * 306.39659 * 9 8 7 28 28 H 1.09010 * 109.46770 * 65.15808 * 1 2 3 29 29 H 1.09000 * 109.47266 * 185.15550 * 1 2 3 30 30 H 1.08997 * 109.47200 * 305.16401 * 1 2 3 31 31 H 1.09001 * 109.47144 * 299.68521 * 4 3 2 32 32 H 1.09002 * 109.47174 * 179.68778 * 4 3 2 33 33 H 0.96696 * 114.00204 * 180.02562 * 5 4 3 34 34 H 1.09005 * 109.46050 * 61.41409 * 6 3 2 35 35 H 1.09000 * 109.46291 * 181.37559 * 6 3 2 36 36 H 1.09003 * 109.49850 * 178.68574 * 7 6 3 37 37 H 1.08997 * 109.50033 * 58.58497 * 7 6 3 38 38 H 1.09007 * 109.58371 * 294.85296 * 8 7 6 39 39 H 1.09000 * 109.58663 * 174.42396 * 8 7 6 40 40 H 0.97003 * 119.99893 * 353.40314 * 12 10 9 41 41 H 1.08000 * 120.25028 * 359.97438 * 14 13 12 42 42 H 1.07995 * 120.66363 * 180.02562 * 15 14 13 43 43 H 1.08002 * 120.43233 * 180.02562 * 16 15 14 44 44 H 0.96997 * 120.00277 * 179.97438 * 21 20 18 45 45 H 1.09002 * 109.58457 * 293.81789 * 27 9 8 46 46 H 1.09001 * 109.58242 * 173.39246 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 1.6404 2.0291 1.2963 5 8 2.1285 1.2841 2.4138 6 6 1.4831 2.1001 -1.1970 7 6 1.8240 1.3603 -2.4926 8 6 3.3458 1.2421 -2.6232 9 7 3.8768 0.6082 -1.4087 10 6 4.6628 -0.4835 -1.4915 11 8 4.9926 -1.0732 -0.4807 12 7 5.0833 -0.9215 -2.6948 13 6 6.0039 -1.9631 -2.7737 14 6 6.1460 -2.8409 -1.6963 15 6 7.0628 -3.8778 -1.7769 16 6 7.8143 -4.0111 -2.9309 17 6 7.6249 -3.0955 -3.9805 18 6 8.3848 -3.2191 -5.1658 19 1 9.1079 -4.0155 -5.2631 20 6 8.2002 -2.3092 -6.2139 21 7 7.3252 -1.3449 -6.0960 22 14 9.2040 -2.4731 -7.7808 23 1 8.9387 -3.7952 -8.4026 24 1 8.8229 -1.3946 -8.7279 25 1 10.6488 -2.3592 -7.4572 26 7 6.7269 -2.1116 -3.8669 27 6 3.5341 1.1866 -0.1022 28 1 -0.3633 0.4318 -0.9327 29 1 -0.3634 -1.0235 0.0923 30 1 -0.3633 0.5918 0.8401 31 1 0.5563 2.1194 1.3653 32 1 2.0886 3.0227 1.2983 33 1 1.9293 1.6849 3.2710 34 1 0.4015 2.2072 -1.1138 35 1 1.9457 3.0870 -1.2098 36 1 1.4279 1.9149 -3.3433 37 1 1.3823 0.3640 -2.4697 38 1 3.7809 2.2350 -2.7372 39 1 3.5916 0.6311 -3.4917 40 1 4.7446 -0.5110 -3.5058 41 1 5.5462 -2.7127 -0.8073 42 1 7.1878 -4.5676 -0.9554 43 1 8.5364 -4.8088 -3.0244 44 1 7.1975 -0.7143 -6.8219 45 1 3.9847 2.1749 -0.0108 46 1 3.9043 0.5390 0.6925 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000881141636.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:07:11 Heat of formation + Delta-G solvation = -55.786189 kcal Electronic energy + Delta-G solvation = -29970.348166 eV Core-core repulsion = 25861.475361 eV Total energy + Delta-G solvation = -4108.872805 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.69589 -39.37116 -37.75708 -36.51242 -35.92103 -34.23285 -33.23948 -32.40374 -31.32188 -30.26945 -29.01523 -27.13139 -26.21967 -25.62773 -24.95428 -22.35950 -21.70368 -21.47527 -20.18359 -19.25498 -18.06858 -17.58573 -17.34092 -16.82188 -16.07751 -15.87652 -15.58806 -15.34786 -14.98796 -14.67129 -14.38809 -14.08861 -13.94543 -13.84373 -13.44377 -13.36386 -12.96559 -12.82446 -12.76713 -12.65290 -12.14647 -12.03748 -11.88601 -11.58799 -11.26123 -11.20953 -11.15652 -10.98560 -10.80727 -10.57249 -10.51224 -10.27822 -10.05108 -9.73848 -9.62338 -9.13450 -8.85127 -8.45311 -7.92288 -7.57871 -6.96691 -6.33234 -4.42034 2.76275 2.92777 3.05061 3.11061 3.14479 3.33588 3.48353 3.77477 3.95754 4.00134 4.27301 4.45353 4.51658 4.72408 4.79242 4.86666 4.91597 4.95896 5.10927 5.15514 5.29055 5.34553 5.35801 5.48947 5.54707 5.62475 5.67191 5.71179 5.98138 6.03831 6.07545 6.27181 6.52405 6.59815 6.86664 6.90798 7.08685 7.15078 7.16933 7.29753 7.37172 7.62552 7.71198 8.02529 8.14656 8.27504 8.52316 8.79006 9.00488 9.17397 10.14960 10.39209 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.019258 B = 0.002967 C = 0.002709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1453.628645 B = 9434.169157 C =10333.162058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.349 6.349 3 C 0.105 3.895 4 C 0.054 3.946 5 O -0.554 6.554 6 C -0.144 4.144 7 C -0.130 4.130 8 C 0.109 3.891 9 N -0.625 5.625 10 C 0.715 3.285 11 O -0.562 6.562 12 N -0.659 5.659 13 C 0.371 3.629 14 C -0.312 4.312 15 C -0.051 4.051 16 C -0.291 4.291 17 C 0.281 3.719 18 C -0.438 4.438 19 H 0.083 0.917 20 C 0.072 3.928 21 N -0.725 5.725 22 Si 0.906 3.094 23 H -0.266 1.266 24 H -0.279 1.279 25 H -0.266 1.266 26 N -0.509 5.509 27 C 0.150 3.850 28 H 0.040 0.960 29 H 0.084 0.916 30 H 0.038 0.962 31 H 0.049 0.951 32 H 0.056 0.944 33 H 0.376 0.624 34 H 0.070 0.930 35 H 0.077 0.923 36 H 0.077 0.923 37 H 0.075 0.925 38 H 0.069 0.931 39 H 0.083 0.917 40 H 0.401 0.599 41 H 0.141 0.859 42 H 0.098 0.902 43 H 0.098 0.902 44 H 0.269 0.731 45 H 0.075 0.925 46 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.216 12.452 7.989 21.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.267 6.267 3 C 0.063 3.937 4 C -0.025 4.025 5 O -0.359 6.359 6 C -0.181 4.181 7 C -0.168 4.168 8 C -0.015 4.015 9 N -0.363 5.363 10 C 0.416 3.584 11 O -0.438 6.438 12 N -0.308 5.308 13 C 0.137 3.863 14 C -0.337 4.337 15 C -0.076 4.076 16 C -0.314 4.314 17 C 0.154 3.846 18 C -0.470 4.470 19 H 0.102 0.898 20 C -0.152 4.152 21 N -0.347 5.347 22 Si 0.731 3.269 23 H -0.190 1.190 24 H -0.204 1.204 25 H -0.191 1.191 26 N -0.228 5.228 27 C 0.027 3.973 28 H 0.059 0.941 29 H 0.102 0.898 30 H 0.057 0.943 31 H 0.068 0.932 32 H 0.074 0.926 33 H 0.222 0.778 34 H 0.088 0.912 35 H 0.096 0.904 36 H 0.096 0.904 37 H 0.094 0.906 38 H 0.087 0.913 39 H 0.102 0.898 40 H 0.238 0.762 41 H 0.159 0.841 42 H 0.116 0.884 43 H 0.116 0.884 44 H 0.080 0.920 45 H 0.093 0.907 46 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -14.829 12.235 7.431 20.611 hybrid contribution -0.206 0.384 -0.122 0.453 sum -15.035 12.619 7.308 20.945 Atomic orbital electron populations 1.22777 0.82350 1.02674 0.99397 1.88188 1.18546 1.25464 1.94521 1.21974 0.95408 0.84453 0.91832 1.22724 0.97836 0.94526 0.87419 1.86650 1.81231 1.51887 1.16085 1.22082 1.01494 0.99547 0.95025 1.21829 0.96301 1.01855 0.96832 1.21645 0.93499 0.98593 0.87732 1.47104 1.52770 1.29784 1.06648 1.15611 0.78907 0.80045 0.83793 1.90780 1.61318 1.56540 1.35192 1.42391 1.44403 1.36802 1.07191 1.18258 0.89302 0.86305 0.92483 1.21923 1.08961 1.00336 1.02490 1.20839 0.94769 0.95877 0.96077 1.21699 1.07493 1.05311 0.96927 1.18148 0.88414 0.86217 0.91846 1.19493 1.18564 1.11492 0.97485 0.89841 1.26014 0.94859 0.94431 0.99877 1.70121 1.24892 1.09402 1.30323 0.86421 0.80789 0.78800 0.80911 1.19034 1.20408 1.19054 1.68016 1.09202 1.23705 1.21843 1.21284 0.90557 0.99303 0.86188 0.94133 0.89788 0.94320 0.93246 0.92622 0.77758 0.91168 0.90425 0.90405 0.90592 0.91272 0.89832 0.76185 0.84131 0.88421 0.88370 0.91970 0.90690 0.87035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 10.00 101.05 1.01 1.25 16 2 O -0.35 -4.82 9.45 -45.06 -0.43 -5.25 16 3 C 0.10 1.15 0.51 -90.50 -0.05 1.10 16 4 C 0.05 0.45 5.69 37.16 0.21 0.67 16 5 O -0.55 -5.65 13.00 -45.06 -0.59 -6.23 16 6 C -0.14 -1.19 4.18 -26.69 -0.11 -1.30 16 7 C -0.13 -1.23 5.86 -26.61 -0.16 -1.39 16 8 C 0.11 1.29 6.38 -3.71 -0.02 1.27 16 9 N -0.63 -9.76 2.91 -178.49 -0.52 -10.28 16 10 C 0.71 14.81 8.19 -86.92 -0.71 14.10 16 11 O -0.56 -13.53 12.42 5.30 0.07 -13.46 16 12 N -0.66 -14.46 5.32 -15.78 -0.08 -14.54 16 13 C 0.37 9.75 7.50 -155.00 -1.16 8.59 16 14 C -0.31 -8.17 8.92 -38.89 -0.35 -8.51 16 15 C -0.05 -1.27 10.15 -39.39 -0.40 -1.67 16 16 C -0.29 -7.63 9.83 -38.66 -0.38 -8.01 16 17 C 0.28 7.99 6.55 -85.00 -0.56 7.43 16 18 C -0.44 -12.00 9.14 -37.74 -0.34 -12.34 16 19 H 0.08 2.14 7.85 -52.48 -0.41 1.72 16 20 C 0.07 1.86 5.50 -17.35 -0.10 1.76 16 21 N -0.73 -19.17 11.46 55.55 0.64 -18.53 16 22 Si 0.91 18.81 29.56 -169.99 -5.02 13.78 16 23 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 24 H -0.28 -5.62 7.11 56.52 0.40 -5.21 16 25 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 26 N -0.51 -14.40 7.89 -10.26 -0.08 -14.48 16 27 C 0.15 2.07 5.17 -3.71 -0.02 2.05 16 28 H 0.04 0.34 6.37 -51.92 -0.33 0.00 16 29 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.04 0.32 6.30 -51.93 -0.33 -0.01 16 31 H 0.05 0.34 6.54 -51.93 -0.34 0.00 16 32 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 33 H 0.38 1.93 9.12 45.56 0.42 2.34 16 34 H 0.07 0.48 6.70 -51.93 -0.35 0.13 16 35 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 37 H 0.08 0.86 7.23 -51.93 -0.38 0.49 16 38 H 0.07 0.70 8.14 -51.92 -0.42 0.27 16 39 H 0.08 1.05 5.68 -51.93 -0.29 0.75 16 40 H 0.40 7.91 6.33 -40.82 -0.26 7.65 16 41 H 0.14 3.72 5.14 -53.02 -0.27 3.45 16 42 H 0.10 2.13 8.06 -52.49 -0.42 1.71 16 43 H 0.10 2.36 8.06 -52.49 -0.42 1.93 16 44 H 0.27 6.44 8.29 -40.82 -0.34 6.10 16 45 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 46 H 0.11 1.92 6.73 -51.93 -0.35 1.57 16 LS Contribution 364.13 15.07 5.49 5.49 Total: -1.00 -35.66 364.13 -9.07 -44.74 By element: Atomic # 1 Polarization: 19.18 SS G_CDS: -5.41 Total: 13.77 kcal Atomic # 6 Polarization: 8.12 SS G_CDS: -3.13 Total: 4.99 kcal Atomic # 7 Polarization: -57.78 SS G_CDS: -0.05 Total: -57.82 kcal Atomic # 8 Polarization: -23.99 SS G_CDS: -0.95 Total: -24.94 kcal Atomic # 14 Polarization: 18.81 SS G_CDS: -5.02 Total: 13.78 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -35.66 -9.07 -44.74 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881141636.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.051 kcal (2) G-P(sol) polarization free energy of solvation -35.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds