Wall clock time and date at job start Tue Mar 31 2020 19:07:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42899 * 114.00416 * 2 1 4 4 C 1.53001 * 109.49630 * 63.99618 * 3 2 1 5 5 O 1.42905 * 109.47302 * 59.68739 * 4 3 2 6 6 C 1.53040 * 109.52475 * 303.91800 * 3 2 1 7 7 C 1.53041 * 109.53580 * 301.39784 * 6 3 2 8 8 C 1.53195 * 109.31208 * 298.63160 * 7 6 3 9 9 N 1.46928 * 108.77536 * 54.63443 * 8 7 6 10 10 C 1.34774 * 120.62784 * 126.36761 * 9 8 7 11 11 O 1.21580 * 119.99828 * 186.93611 * 10 9 8 12 12 N 1.34778 * 120.00129 * 6.93946 * 10 9 8 13 13 C 1.39240 * 119.99870 * 173.40251 * 12 10 9 14 14 C 1.39691 * 119.57748 * 21.77428 * 13 12 10 15 15 C 1.38647 * 119.49536 * 179.97438 * 14 13 12 16 16 C 1.38353 * 118.66843 * 0.02562 * 15 14 13 17 17 C 1.40564 * 119.13537 * 359.97438 * 16 15 14 18 18 C 1.41335 * 119.79009 * 180.02562 * 17 16 15 19 19 H 1.08009 * 119.99782 * 0.02562 * 18 17 16 20 20 C 1.40020 * 120.00236 * 180.02562 * 18 17 16 21 21 N 1.30747 * 120.00283 * 0.02562 * 20 18 17 22 22 Si 1.86806 * 120.00010 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47180 * 60.00142 * 22 20 18 24 24 H 1.48506 * 109.47084 * 180.02562 * 22 20 18 25 25 H 1.48499 * 109.47235 * 299.99993 * 22 20 18 26 26 N 1.31907 * 119.57445 * 201.51048 * 13 12 10 27 27 C 1.46929 * 118.73897 * 306.39659 * 9 8 7 28 28 H 1.09010 * 109.46770 * 65.15808 * 1 2 3 29 29 H 1.09000 * 109.47266 * 185.15550 * 1 2 3 30 30 H 1.08997 * 109.47200 * 305.16401 * 1 2 3 31 31 H 1.09001 * 109.47144 * 299.68521 * 4 3 2 32 32 H 1.09002 * 109.47174 * 179.68778 * 4 3 2 33 33 H 0.96696 * 114.00204 * 180.02562 * 5 4 3 34 34 H 1.09005 * 109.46050 * 61.41409 * 6 3 2 35 35 H 1.09000 * 109.46291 * 181.37559 * 6 3 2 36 36 H 1.09003 * 109.49850 * 178.68574 * 7 6 3 37 37 H 1.08997 * 109.50033 * 58.58497 * 7 6 3 38 38 H 1.09007 * 109.58371 * 294.85296 * 8 7 6 39 39 H 1.09000 * 109.58663 * 174.42396 * 8 7 6 40 40 H 0.97003 * 119.99893 * 353.40314 * 12 10 9 41 41 H 1.08000 * 120.25028 * 359.97438 * 14 13 12 42 42 H 1.07995 * 120.66363 * 180.02562 * 15 14 13 43 43 H 1.08002 * 120.43233 * 180.02562 * 16 15 14 44 44 H 0.96997 * 120.00277 * 179.97438 * 21 20 18 45 45 H 1.09002 * 109.58457 * 293.81789 * 27 9 8 46 46 H 1.09001 * 109.58242 * 173.39246 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 1.6404 2.0291 1.2963 5 8 2.1285 1.2841 2.4138 6 6 1.4831 2.1001 -1.1970 7 6 1.8240 1.3603 -2.4926 8 6 3.3458 1.2421 -2.6232 9 7 3.8768 0.6082 -1.4087 10 6 4.6628 -0.4835 -1.4915 11 8 4.9926 -1.0732 -0.4807 12 7 5.0833 -0.9215 -2.6948 13 6 6.0039 -1.9631 -2.7737 14 6 6.1460 -2.8409 -1.6963 15 6 7.0628 -3.8778 -1.7769 16 6 7.8143 -4.0111 -2.9309 17 6 7.6249 -3.0955 -3.9805 18 6 8.3848 -3.2191 -5.1658 19 1 9.1079 -4.0155 -5.2631 20 6 8.2002 -2.3092 -6.2139 21 7 7.3252 -1.3449 -6.0960 22 14 9.2040 -2.4731 -7.7808 23 1 8.9387 -3.7952 -8.4026 24 1 8.8229 -1.3946 -8.7279 25 1 10.6488 -2.3592 -7.4572 26 7 6.7269 -2.1116 -3.8669 27 6 3.5341 1.1866 -0.1022 28 1 -0.3633 0.4318 -0.9327 29 1 -0.3634 -1.0235 0.0923 30 1 -0.3633 0.5918 0.8401 31 1 0.5563 2.1194 1.3653 32 1 2.0886 3.0227 1.2983 33 1 1.9293 1.6849 3.2710 34 1 0.4015 2.2072 -1.1138 35 1 1.9457 3.0870 -1.2098 36 1 1.4279 1.9149 -3.3433 37 1 1.3823 0.3640 -2.4697 38 1 3.7809 2.2350 -2.7372 39 1 3.5916 0.6311 -3.4917 40 1 4.7446 -0.5110 -3.5058 41 1 5.5462 -2.7127 -0.8073 42 1 7.1878 -4.5676 -0.9554 43 1 8.5364 -4.8088 -3.0244 44 1 7.1975 -0.7143 -6.8219 45 1 3.9847 2.1749 -0.0108 46 1 3.9043 0.5390 0.6925 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000881141636.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:07:10 Heat of formation + Delta-G solvation = -82.260269 kcal Electronic energy + Delta-G solvation = -29971.496168 eV Core-core repulsion = 25861.475361 eV Total energy + Delta-G solvation = -4110.020807 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.99168 -40.67948 -39.52616 -37.40605 -36.94982 -36.06348 -35.10988 -33.48565 -32.40931 -32.15068 -30.89068 -27.98857 -27.44584 -26.98565 -26.29238 -23.53464 -23.45537 -23.16533 -21.35649 -20.61568 -19.53158 -19.24461 -18.27979 -18.10257 -17.46559 -16.99255 -16.75565 -16.50896 -16.32102 -16.25999 -16.17463 -15.58746 -15.03344 -14.93174 -14.77409 -14.55108 -14.46577 -14.04088 -13.85896 -13.76232 -13.58729 -13.53944 -12.94723 -12.87036 -12.82654 -12.68573 -12.56483 -12.35988 -12.02376 -11.93520 -11.83893 -11.60749 -11.33602 -11.03063 -10.92671 -10.67180 -10.39511 -9.97453 -9.72719 -9.61463 -8.91537 -8.28255 -6.49184 0.83567 1.13294 1.43670 1.48121 1.55534 1.58403 2.10762 2.26105 2.70055 2.86904 2.89909 3.32571 3.66482 3.72027 3.92690 3.95098 4.04451 4.18099 4.31532 4.32930 4.42178 4.47366 4.53196 4.53739 4.57704 4.65061 4.66659 4.76093 4.83543 4.87452 4.89157 4.92339 4.99342 5.03058 5.12768 5.25527 5.30292 5.49477 5.62585 5.70449 5.81044 6.00865 6.18700 6.29864 6.38858 6.73607 6.85962 6.94581 7.00721 7.50155 8.11168 8.47518 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.019258 B = 0.002967 C = 0.002709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1453.628645 B = 9434.169157 C =10333.162058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.394 6.394 3 C 0.099 3.901 4 C 0.055 3.945 5 O -0.587 6.587 6 C -0.137 4.137 7 C -0.124 4.124 8 C 0.100 3.900 9 N -0.614 5.614 10 C 0.707 3.293 11 O -0.604 6.604 12 N -0.656 5.656 13 C 0.364 3.636 14 C -0.333 4.333 15 C -0.049 4.049 16 C -0.308 4.308 17 C 0.246 3.754 18 C -0.466 4.466 19 H 0.092 0.908 20 C 0.026 3.974 21 N -0.753 5.753 22 Si 0.990 3.010 23 H -0.260 1.260 24 H -0.266 1.266 25 H -0.261 1.261 26 N -0.532 5.532 27 C 0.144 3.856 28 H 0.057 0.943 29 H 0.076 0.924 30 H 0.056 0.944 31 H 0.071 0.929 32 H 0.082 0.918 33 H 0.395 0.605 34 H 0.093 0.907 35 H 0.104 0.896 36 H 0.109 0.891 37 H 0.052 0.948 38 H 0.097 0.903 39 H 0.071 0.929 40 H 0.409 0.591 41 H 0.135 0.865 42 H 0.128 0.872 43 H 0.115 0.885 44 H 0.279 0.721 45 H 0.103 0.897 46 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.287 14.797 6.819 23.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.314 6.314 3 C 0.059 3.941 4 C -0.024 4.024 5 O -0.395 6.395 6 C -0.174 4.174 7 C -0.162 4.162 8 C -0.022 4.022 9 N -0.351 5.351 10 C 0.409 3.591 11 O -0.483 6.483 12 N -0.305 5.305 13 C 0.128 3.872 14 C -0.357 4.357 15 C -0.073 4.073 16 C -0.331 4.331 17 C 0.119 3.881 18 C -0.498 4.498 19 H 0.110 0.890 20 C -0.196 4.196 21 N -0.375 5.375 22 Si 0.810 3.190 23 H -0.184 1.184 24 H -0.191 1.191 25 H -0.186 1.186 26 N -0.252 5.252 27 C 0.021 3.979 28 H 0.076 0.924 29 H 0.094 0.906 30 H 0.074 0.926 31 H 0.089 0.911 32 H 0.100 0.900 33 H 0.245 0.755 34 H 0.112 0.888 35 H 0.122 0.878 36 H 0.128 0.872 37 H 0.071 0.929 38 H 0.115 0.885 39 H 0.089 0.911 40 H 0.248 0.752 41 H 0.153 0.847 42 H 0.146 0.854 43 H 0.133 0.867 44 H 0.090 0.910 45 H 0.121 0.879 46 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -15.966 14.641 6.286 22.556 hybrid contribution 0.066 -0.294 0.309 0.432 sum -15.900 14.347 6.595 22.408 Atomic orbital electron populations 1.22891 0.80617 1.02857 1.00980 1.88126 1.20667 1.27613 1.94962 1.22128 0.92973 0.84264 0.94742 1.22803 0.99235 0.94783 0.85547 1.86610 1.81822 1.53350 1.17747 1.22092 1.03086 0.99775 0.92485 1.21809 0.93845 1.01447 0.99111 1.21994 0.95633 0.99127 0.85477 1.47191 1.50994 1.27938 1.08947 1.15856 0.79465 0.81116 0.82690 1.90731 1.63096 1.58279 1.36204 1.42299 1.43858 1.36171 1.08214 1.18570 0.89488 0.87089 0.92080 1.22063 1.09866 1.01265 1.02555 1.21171 0.93733 0.95813 0.96629 1.21885 1.08445 1.05790 0.96992 1.18701 0.89159 0.87073 0.93148 1.19911 1.19069 1.12615 0.98178 0.88981 1.26977 0.95918 0.93523 1.03206 1.70201 1.25672 1.09786 1.31839 0.85153 0.78740 0.79195 0.75887 1.18385 1.19069 1.18564 1.68063 1.10105 1.24393 1.22663 1.21506 0.93442 0.99199 0.83742 0.92438 0.90569 0.92582 0.91102 0.90007 0.75550 0.88810 0.87790 0.87239 0.92932 0.88499 0.91100 0.75193 0.84731 0.85387 0.86735 0.91000 0.87879 0.91317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.41 10.00 113.37 1.13 1.54 16 2 O -0.39 -10.80 9.45 -139.58 -1.32 -12.12 16 3 C 0.10 2.01 0.51 -10.72 -0.01 2.01 16 4 C 0.05 0.77 5.69 71.98 0.41 1.18 16 5 O -0.59 -11.46 13.00 -139.58 -1.82 -13.28 16 6 C -0.14 -1.74 4.18 30.62 0.13 -1.61 16 7 C -0.12 -2.04 5.86 30.67 0.18 -1.86 16 8 C 0.10 2.23 6.38 86.36 0.55 2.78 16 9 N -0.61 -19.31 2.91 -836.89 -2.44 -21.75 16 10 C 0.71 30.62 8.19 179.05 1.47 32.09 16 11 O -0.60 -30.81 12.42 -3.97 -0.05 -30.85 16 12 N -0.66 -30.03 5.32 -322.12 -1.71 -31.75 16 13 C 0.36 19.93 7.50 133.26 1.00 20.93 16 14 C -0.33 -18.16 8.92 22.72 0.20 -17.96 16 15 C -0.05 -2.51 10.15 22.39 0.23 -2.29 16 16 C -0.31 -16.56 9.83 22.86 0.22 -16.33 16 17 C 0.25 14.40 6.55 40.19 0.26 14.67 16 18 C -0.47 -25.91 9.14 23.46 0.21 -25.69 16 19 H 0.09 4.75 7.85 -2.91 -0.02 4.73 16 20 C 0.03 1.31 5.50 85.29 0.47 1.78 16 21 N -0.75 -40.06 11.46 21.84 0.25 -39.81 16 22 Si 0.99 38.06 29.56 68.60 2.03 40.08 16 23 H -0.26 -9.66 7.11 99.48 0.71 -8.96 16 24 H -0.27 -9.60 7.11 99.48 0.71 -8.89 16 25 H -0.26 -9.79 7.11 99.48 0.71 -9.08 16 26 N -0.53 -31.20 7.89 -186.37 -1.47 -32.67 16 27 C 0.14 3.92 5.17 86.36 0.45 4.36 16 28 H 0.06 0.82 6.37 -2.38 -0.02 0.80 16 29 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 30 H 0.06 0.79 6.30 -2.39 -0.02 0.78 16 31 H 0.07 0.71 6.54 -2.39 -0.02 0.69 16 32 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.39 3.59 9.12 -74.06 -0.68 2.91 16 34 H 0.09 0.82 6.70 -2.38 -0.02 0.81 16 35 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 36 H 0.11 1.15 8.14 -2.39 -0.02 1.13 16 37 H 0.05 1.13 7.23 -2.39 -0.02 1.12 16 38 H 0.10 1.67 8.14 -2.38 -0.02 1.65 16 39 H 0.07 1.76 5.68 -2.39 -0.01 1.75 16 40 H 0.41 16.79 6.33 -92.71 -0.59 16.21 16 41 H 0.14 7.52 5.14 -11.29 -0.06 7.46 16 42 H 0.13 5.60 8.06 -2.91 -0.02 5.58 16 43 H 0.11 5.58 8.06 -2.91 -0.02 5.55 16 44 H 0.28 13.28 8.29 -92.71 -0.77 12.51 16 45 H 0.10 2.16 8.14 -2.39 -0.02 2.14 16 46 H 0.07 2.49 6.73 -2.39 -0.02 2.48 16 Total: -1.00 -82.34 364.13 0.12 -82.22 By element: Atomic # 1 Polarization: 44.58 SS G_CDS: -0.26 Total: 44.31 kcal Atomic # 6 Polarization: 8.69 SS G_CDS: 6.91 Total: 15.61 kcal Atomic # 7 Polarization: -120.60 SS G_CDS: -5.37 Total: -125.98 kcal Atomic # 8 Polarization: -53.07 SS G_CDS: -3.18 Total: -56.25 kcal Atomic # 14 Polarization: 38.06 SS G_CDS: 2.03 Total: 40.08 kcal Total: -82.34 0.12 -82.22 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881141636.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.037 kcal (2) G-P(sol) polarization free energy of solvation -82.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds