Wall clock time and date at job start Tue Mar 31 2020 19:16:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42904 * 113.99998 * 2 1 4 4 C 1.53005 * 109.54037 * 64.68587 * 3 2 1 5 5 N 1.46499 * 109.47300 * 59.59071 * 4 3 2 6 6 C 1.34772 * 120.00188 * 184.86560 * 5 4 3 7 7 O 1.21575 * 119.99923 * 0.02562 * 6 5 4 8 8 N 1.34779 * 120.00451 * 180.02562 * 6 5 4 9 9 C 1.39243 * 120.00099 * 184.90479 * 8 6 5 10 10 C 1.39681 * 119.57421 * 174.43212 * 9 8 6 11 11 C 1.38649 * 119.49649 * 179.97438 * 10 9 8 12 12 C 1.38347 * 118.66953 * 0.02562 * 11 10 9 13 13 C 1.40581 * 119.13305 * 359.97438 * 12 11 10 14 14 C 1.41329 * 119.78538 * 180.02562 * 13 12 11 15 15 H 1.07998 * 120.00812 * 359.97438 * 14 13 12 16 16 C 1.40028 * 119.99578 * 180.02562 * 14 13 12 17 17 N 1.30745 * 120.00234 * 359.97438 * 16 14 13 18 18 Si 1.86806 * 120.00003 * 179.97438 * 16 14 13 19 19 H 1.48497 * 109.47023 * 89.99609 * 18 16 14 20 20 H 1.48499 * 109.46892 * 210.00046 * 18 16 14 21 21 H 1.48501 * 109.46991 * 329.99567 * 18 16 14 22 22 N 1.31902 * 119.57426 * 354.16080 * 9 8 6 23 23 C 1.53178 * 109.54020 * 184.85828 * 3 2 1 24 24 C 1.53103 * 109.15683 * 63.06911 * 23 3 2 25 25 O 1.42901 * 109.48824 * 57.46854 * 24 23 3 26 26 C 1.42910 * 114.10151 * 298.89053 * 25 24 23 27 27 C 1.53090 * 109.41151 * 61.15468 * 26 25 24 28 28 H 1.08994 * 109.47380 * 185.16760 * 1 2 3 29 29 H 1.09002 * 109.47334 * 305.16547 * 1 2 3 30 30 H 1.09000 * 109.47489 * 65.16976 * 1 2 3 31 31 H 1.08994 * 109.46905 * 299.59203 * 4 3 2 32 32 H 1.08997 * 109.46867 * 179.58829 * 4 3 2 33 33 H 0.97008 * 119.99817 * 4.86812 * 5 4 3 34 34 H 0.97001 * 119.99202 * 5.17531 * 8 6 5 35 35 H 1.08003 * 120.25437 * 359.95909 * 10 9 8 36 36 H 1.08001 * 120.66536 * 180.02562 * 11 10 9 37 37 H 1.08006 * 120.43733 * 179.97438 * 12 11 10 38 38 H 0.96997 * 119.99756 * 180.02562 * 17 16 14 39 39 H 1.09002 * 109.51800 * 182.88278 * 23 3 2 40 40 H 1.08999 * 109.52546 * 303.07085 * 23 3 2 41 41 H 1.09004 * 109.40575 * 297.48691 * 24 23 3 42 42 H 1.09000 * 109.49618 * 177.50527 * 24 23 3 43 43 H 1.08997 * 109.47368 * 301.18035 * 26 25 24 44 44 H 1.08995 * 109.49323 * 181.14538 * 26 25 24 45 45 H 1.08998 * 109.52399 * 182.48809 * 27 26 25 46 46 H 1.09000 * 109.57458 * 62.32855 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.6551 2.0238 1.3035 5 7 2.1661 1.2538 2.4402 6 6 1.8863 1.6447 3.6993 7 8 1.2093 2.6360 3.8917 8 7 2.3568 0.9367 4.7451 9 6 1.9843 1.2798 6.0422 10 6 2.3815 0.4717 7.1101 11 6 2.0102 0.8151 8.4010 12 6 1.2515 1.9561 8.5921 13 6 0.8833 2.7280 7.4763 14 6 0.1088 3.8965 7.6557 15 1 -0.1985 4.1938 8.6474 16 6 -0.2609 4.6683 6.5474 17 7 0.1108 4.3083 5.3467 18 14 -1.2851 6.2125 6.7843 19 1 -0.3857 7.3774 6.9829 20 1 -2.1277 6.4368 5.5822 21 1 -2.1561 6.0507 7.9761 22 7 1.2655 2.3666 6.2472 23 6 3.5326 1.1885 -0.1223 24 6 3.8805 0.5418 -1.4657 25 8 3.3239 1.3195 -2.5275 26 6 1.8989 1.4221 -2.4907 27 6 1.4715 2.1062 -1.1895 28 1 -0.3634 -1.0234 0.0926 29 1 -0.3634 0.5919 0.8401 30 1 -0.3634 0.4315 -0.9326 31 1 0.5720 2.1155 1.3843 32 1 2.1050 3.0165 1.3054 33 1 2.7061 0.4626 2.2867 34 1 2.9581 0.1906 4.5944 35 1 2.9731 -0.4140 6.9316 36 1 2.3072 0.2042 9.2406 37 1 0.9460 2.2501 9.5855 38 1 -0.1450 4.8431 4.5790 39 1 3.9794 2.1814 -0.0708 40 1 3.9171 0.5724 0.6906 41 1 3.4689 -0.4669 -1.4995 42 1 4.9638 0.4962 -1.5778 43 1 1.4615 0.4249 -2.5378 44 1 1.5546 2.0108 -3.3410 45 1 0.3834 2.1458 -1.1392 46 1 1.8747 3.1185 -1.1596 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000881150224.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:16:10 Heat of formation + Delta-G solvation = -77.229834 kcal Electronic energy + Delta-G solvation = -29873.788401 eV Core-core repulsion = 25763.985730 eV Total energy + Delta-G solvation = -4109.802671 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.59286 -40.84321 -39.43691 -38.23836 -36.03239 -35.42533 -34.82258 -33.30727 -32.21718 -32.17816 -30.88567 -28.39879 -27.80154 -27.30620 -24.68148 -24.16595 -23.38842 -22.88700 -21.39117 -20.91654 -19.79852 -18.91903 -18.08694 -17.73417 -17.09504 -16.90976 -16.55761 -16.43885 -16.30832 -16.24569 -15.96478 -15.60156 -15.55770 -15.46499 -14.67530 -14.56382 -14.33148 -13.92172 -13.74947 -13.69252 -13.49064 -13.41939 -13.17561 -12.87862 -12.71776 -12.54787 -12.49750 -12.30658 -12.21833 -11.76626 -11.56189 -11.49741 -11.33849 -10.89207 -10.86231 -10.75723 -10.36084 -9.92601 -9.82894 -9.10476 -8.77522 -8.01513 -6.40273 0.97532 1.29242 1.39122 1.51160 1.53944 1.77051 2.26908 2.56032 2.69368 2.96807 3.04671 3.36575 3.52830 3.58860 3.72326 4.00037 4.08498 4.29039 4.34152 4.38274 4.41174 4.44702 4.46217 4.57789 4.61526 4.69127 4.74464 4.77904 4.83568 4.85377 4.90216 4.97694 5.03368 5.06221 5.07338 5.18623 5.27979 5.62805 5.68450 5.86427 5.93308 6.03621 6.12841 6.25542 6.31897 6.43130 6.82988 7.08396 7.25142 8.01381 8.39038 8.59168 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.014338 B = 0.003232 C = 0.002799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1952.396995 B = 8661.603428 C =10001.486884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.377 6.377 3 C 0.116 3.884 4 C 0.128 3.872 5 N -0.728 5.728 6 C 0.658 3.342 7 O -0.516 6.516 8 N -0.661 5.661 9 C 0.365 3.635 10 C -0.346 4.346 11 C -0.034 4.034 12 C -0.331 4.331 13 C 0.237 3.763 14 C -0.467 4.467 15 H 0.085 0.915 16 C 0.010 3.990 17 N -0.685 5.685 18 Si 0.973 3.027 19 H -0.266 1.266 20 H -0.274 1.274 21 H -0.256 1.256 22 N -0.507 5.507 23 C -0.138 4.138 24 C 0.065 3.935 25 O -0.400 6.400 26 C 0.068 3.932 27 C -0.179 4.179 28 H 0.097 0.903 29 H 0.028 0.972 30 H 0.060 0.940 31 H 0.050 0.950 32 H 0.057 0.943 33 H 0.403 0.597 34 H 0.416 0.584 35 H 0.131 0.869 36 H 0.138 0.862 37 H 0.104 0.896 38 H 0.268 0.732 39 H 0.085 0.915 40 H 0.089 0.911 41 H 0.060 0.940 42 H 0.109 0.891 43 H 0.058 0.942 44 H 0.109 0.891 45 H 0.088 0.912 46 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.672 -8.400 -16.811 19.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.296 6.296 3 C 0.076 3.924 4 C 0.003 3.997 5 N -0.389 5.389 6 C 0.356 3.644 7 O -0.384 6.384 8 N -0.312 5.312 9 C 0.125 3.875 10 C -0.371 4.371 11 C -0.058 4.058 12 C -0.354 4.354 13 C 0.111 3.889 14 C -0.498 4.498 15 H 0.103 0.897 16 C -0.215 4.215 17 N -0.304 5.304 18 Si 0.794 3.206 19 H -0.191 1.191 20 H -0.199 1.199 21 H -0.179 1.179 22 N -0.226 5.226 23 C -0.176 4.176 24 C -0.011 4.011 25 O -0.319 6.319 26 C -0.008 4.008 27 C -0.218 4.218 28 H 0.115 0.885 29 H 0.047 0.953 30 H 0.079 0.921 31 H 0.068 0.932 32 H 0.076 0.924 33 H 0.239 0.761 34 H 0.253 0.747 35 H 0.149 0.851 36 H 0.155 0.845 37 H 0.122 0.878 38 H 0.079 0.921 39 H 0.104 0.896 40 H 0.108 0.892 41 H 0.078 0.922 42 H 0.127 0.873 43 H 0.077 0.923 44 H 0.127 0.873 45 H 0.106 0.894 46 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 3.968 -6.959 -17.780 19.501 hybrid contribution -0.185 -0.332 1.220 1.278 sum 3.783 -7.291 -16.560 18.486 Atomic orbital electron populations 1.22887 0.80604 1.03462 1.00436 1.87914 1.20426 1.26420 1.94819 1.21693 0.95000 0.83768 0.91982 1.21582 0.98642 0.94754 0.84715 1.44819 1.58845 1.32509 1.02702 1.16706 0.82184 0.84239 0.81292 1.91377 1.39235 1.24754 1.83061 1.42383 1.50761 1.35154 1.02881 1.18837 0.92788 0.91716 0.84120 1.20917 1.17802 1.06084 0.92330 1.21027 0.93763 0.94592 0.96411 1.21807 1.12978 1.02112 0.98517 1.18888 0.90345 0.92869 0.86779 1.19890 1.28635 1.06254 0.94976 0.89673 1.27041 0.97647 1.02028 0.94811 1.70570 1.28808 1.32533 0.98483 0.85359 0.78514 0.77866 0.78865 1.19072 1.19893 1.17944 1.68654 1.16490 1.14466 1.23023 1.22201 0.91902 1.03498 0.99984 1.22615 0.99706 0.93949 0.84849 1.87902 1.21166 1.73344 1.49459 1.22556 0.80945 1.00461 0.96846 1.22745 1.02874 1.00843 0.95313 0.88466 0.95289 0.92120 0.93206 0.92432 0.76072 0.74663 0.85067 0.84451 0.87776 0.92133 0.89599 0.89249 0.92210 0.87262 0.92346 0.87281 0.89358 0.89681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.41 10.14 113.37 1.15 1.56 16 2 O -0.38 -7.55 9.11 -148.98 -1.36 -8.90 16 3 C 0.12 2.28 0.37 -10.67 0.00 2.28 16 4 C 0.13 3.53 4.36 86.38 0.38 3.90 16 5 N -0.73 -21.62 5.21 -478.56 -2.49 -24.12 16 6 C 0.66 27.57 8.52 179.06 1.53 29.10 16 7 O -0.52 -27.63 12.10 -3.95 -0.05 -27.68 16 8 N -0.66 -26.29 5.39 -322.13 -1.74 -28.02 16 9 C 0.37 18.09 7.43 133.26 0.99 19.08 16 10 C -0.35 -14.98 9.96 22.72 0.23 -14.76 16 11 C -0.03 -1.49 10.15 22.39 0.23 -1.26 16 12 C -0.33 -17.03 9.83 22.87 0.22 -16.80 16 13 C 0.24 13.96 6.55 40.19 0.26 14.22 16 14 C -0.47 -27.10 9.14 23.46 0.21 -26.89 16 15 H 0.09 4.63 7.85 -2.91 -0.02 4.61 16 16 C 0.01 0.57 5.50 85.29 0.47 1.04 16 17 N -0.69 -40.33 8.99 21.84 0.20 -40.13 16 18 Si 0.97 41.38 29.56 68.60 2.03 43.41 16 19 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 20 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 21 H -0.26 -10.40 7.11 99.48 0.71 -9.69 16 22 N -0.51 -29.82 5.74 -186.37 -1.07 -30.89 16 23 C -0.14 -2.37 4.94 30.69 0.15 -2.22 16 24 C 0.07 1.02 6.69 72.02 0.48 1.51 16 25 O -0.40 -7.54 10.77 -148.98 -1.60 -9.15 16 26 C 0.07 1.06 6.70 72.01 0.48 1.54 16 27 C -0.18 -3.05 4.51 30.68 0.14 -2.92 16 28 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 29 H 0.03 0.67 6.33 -2.39 -0.02 0.65 16 30 H 0.06 0.89 6.59 -2.39 -0.02 0.87 16 31 H 0.05 1.58 6.56 -2.39 -0.02 1.56 16 32 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 33 H 0.40 9.37 7.19 -92.70 -0.67 8.71 16 34 H 0.42 12.20 8.72 -92.71 -0.81 11.39 16 35 H 0.13 4.54 8.06 -2.91 -0.02 4.52 16 36 H 0.14 4.83 8.06 -2.91 -0.02 4.81 16 37 H 0.10 4.99 8.06 -2.91 -0.02 4.96 16 38 H 0.27 14.90 8.29 -92.71 -0.77 14.13 16 39 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 40 H 0.09 1.40 6.91 -2.39 -0.02 1.39 16 41 H 0.06 0.94 7.82 -2.39 -0.02 0.92 16 42 H 0.11 1.35 8.14 -2.39 -0.02 1.33 16 43 H 0.06 0.87 7.82 -2.39 -0.02 0.85 16 44 H 0.11 1.32 8.14 -2.39 -0.02 1.30 16 45 H 0.09 1.39 6.44 -2.39 -0.02 1.37 16 46 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 Total: -1.00 -77.36 366.48 0.38 -76.98 By element: Atomic # 1 Polarization: 39.57 SS G_CDS: -0.45 Total: 39.12 kcal Atomic # 6 Polarization: 2.46 SS G_CDS: 6.92 Total: 9.38 kcal Atomic # 7 Polarization: -118.05 SS G_CDS: -5.10 Total: -123.16 kcal Atomic # 8 Polarization: -42.72 SS G_CDS: -3.01 Total: -45.73 kcal Atomic # 14 Polarization: 41.38 SS G_CDS: 2.03 Total: 43.41 kcal Total: -77.36 0.38 -76.98 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881150224.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.253 kcal (2) G-P(sol) polarization free energy of solvation -77.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds