Wall clock time and date at job start Tue Mar 31 2020 18:49:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42903 * 114.00002 * 2 1 4 4 H 1.08997 * 109.57093 * 30.15241 * 3 2 1 5 5 C 1.53094 * 109.52022 * 269.99948 * 3 2 1 6 6 O 1.42906 * 109.41344 * 182.48415 * 5 3 2 7 7 C 1.42904 * 114.09510 * 61.15688 * 6 5 3 8 8 C 1.53091 * 109.42620 * 298.83691 * 7 6 5 9 9 C 1.53170 * 109.52220 * 150.31065 * 3 2 1 10 10 H 1.09002 * 109.54648 * 296.84434 * 9 3 2 11 11 N 1.46508 * 109.54366 * 57.02133 * 9 3 2 12 12 C 1.46500 * 119.99819 * 4.82767 * 11 9 3 13 13 C 1.34774 * 119.99723 * 184.83183 * 11 9 3 14 14 O 1.21575 * 120.00182 * 359.97438 * 13 11 9 15 15 N 1.34776 * 119.99486 * 179.97438 * 13 11 9 16 16 C 1.39466 * 120.00122 * 185.09548 * 15 13 11 17 17 C 1.38639 * 119.65162 * 174.89085 * 16 15 13 18 18 C 1.40818 * 118.67659 * 179.76729 * 17 16 15 19 19 C 1.41544 * 121.00003 * 180.24144 * 18 17 16 20 20 H 1.08006 * 119.99657 * 214.15032 * 19 18 17 21 21 C 1.40031 * 120.00137 * 34.14208 * 19 18 17 22 22 N 1.30738 * 119.99814 * 5.58055 * 21 19 18 23 23 Si 1.86797 * 119.99838 * 185.57707 * 21 19 18 24 24 H 1.48498 * 109.47363 * 90.00299 * 23 21 19 25 25 H 1.48502 * 109.47088 * 209.99994 * 23 21 19 26 26 H 1.48506 * 109.47351 * 330.00187 * 23 21 19 27 27 C 1.41163 * 118.00152 * 0.49336 * 18 17 16 28 28 C 1.36595 * 119.12875 * 359.74297 * 27 18 17 29 29 N 1.32063 * 121.25587 * 0.02562 * 28 27 18 30 30 H 1.09005 * 109.46814 * 60.00394 * 1 2 3 31 31 H 1.09002 * 109.47313 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47548 * 300.00469 * 1 2 3 33 33 H 1.08992 * 109.48103 * 62.49990 * 5 3 2 34 34 H 1.09002 * 109.49018 * 302.47415 * 5 3 2 35 35 H 1.09004 * 109.48351 * 58.82642 * 7 6 5 36 36 H 1.09005 * 109.47845 * 178.84698 * 7 6 5 37 37 H 1.09004 * 109.52267 * 177.52408 * 8 7 6 38 38 H 1.09002 * 109.51935 * 297.71061 * 8 7 6 39 39 H 1.08994 * 109.46952 * 94.83135 * 12 11 9 40 40 H 1.08998 * 109.46631 * 214.83734 * 12 11 9 41 41 H 1.09006 * 109.46878 * 334.82931 * 12 11 9 42 42 H 0.97002 * 120.00401 * 5.09690 * 15 13 11 43 43 H 1.08008 * 120.65989 * 0.02562 * 17 16 15 44 44 H 0.97003 * 120.00141 * 179.97438 * 22 21 19 45 45 H 1.08000 * 120.43723 * 179.71582 * 27 18 17 46 46 H 1.08001 * 119.36839 * 179.97438 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3475 2.0002 0.5159 5 6 2.2183 1.7728 -1.4429 6 8 2.8525 3.0535 -1.4407 7 6 4.1430 3.0644 -0.8271 8 6 4.0125 2.6491 0.6406 9 6 3.3641 1.2630 0.7150 10 1 3.2170 0.9833 1.7582 11 7 4.2326 0.2802 0.0621 12 6 3.7839 -0.3989 -1.1560 13 6 5.4442 0.0010 0.5820 14 8 5.8167 0.5649 1.5926 15 7 6.2429 -0.9035 -0.0184 16 6 7.4499 -1.2712 0.5757 17 6 8.2151 -2.2783 0.0080 18 6 9.4326 -2.6297 0.6221 19 6 10.2548 -3.6472 0.0814 20 1 10.8287 -4.2838 0.7386 21 6 10.3240 -3.8284 -1.3054 22 7 9.7169 -2.9911 -2.1051 23 14 11.2840 -5.2664 -2.0125 24 1 10.3851 -6.4399 -2.1540 25 1 11.8245 -4.8935 -3.3445 26 1 12.4055 -5.6089 -1.1014 27 6 9.8059 -1.9405 1.7961 28 6 8.9836 -0.9653 2.2845 29 7 7.8504 -0.6582 1.6798 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3634 0.5139 0.8899 33 1 1.2532 1.8459 -1.9441 34 1 2.8482 1.0562 -1.9701 35 1 4.7982 2.3646 -1.3459 36 1 4.5644 4.0680 -0.8848 37 1 5.0010 2.6143 1.0987 38 1 3.3901 3.3710 1.1695 39 1 4.1623 0.1329 -2.0289 40 1 4.1612 -1.4215 -1.1617 41 1 2.6943 -0.4135 -1.1834 42 1 5.9783 -1.2987 -0.8638 43 1 7.8859 -2.7805 -0.8898 44 1 9.7651 -3.1164 -3.0658 45 1 10.7293 -2.1815 2.3018 46 1 9.2652 -0.4358 3.1827 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000889253760.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:49:46 Heat of formation + Delta-G solvation = -38.766550 kcal Electronic energy + Delta-G solvation = -30100.576522 eV Core-core repulsion = 25992.441744 eV Total energy + Delta-G solvation = -4108.134778 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.05084 -39.35470 -37.93308 -37.57828 -35.15719 -34.32585 -33.77532 -32.00335 -30.65493 -30.42603 -28.39145 -27.37074 -26.93274 -25.94284 -24.40336 -23.29518 -22.07989 -21.89149 -20.41911 -19.19951 -17.77695 -17.61357 -17.31040 -16.78014 -16.22347 -16.01145 -15.68675 -15.41296 -15.15959 -14.85571 -14.56255 -14.21028 -14.11987 -13.71580 -13.52892 -13.33944 -13.20941 -12.87657 -12.57058 -12.49425 -12.46452 -12.25621 -12.15740 -11.90671 -11.56922 -11.38595 -11.22932 -11.05135 -10.89771 -10.52016 -10.25656 -10.18165 -10.12301 -9.68421 -9.45177 -9.35177 -9.32391 -8.41194 -7.87548 -7.70612 -7.00496 -6.70954 -4.59587 2.70400 2.82580 2.85714 3.04678 3.07969 3.19861 3.25085 3.79605 3.85304 3.90704 4.20820 4.43622 4.53059 4.72173 4.75084 4.88592 4.92970 4.96697 5.02469 5.17500 5.26037 5.35347 5.40643 5.45639 5.53191 5.66508 5.71186 5.78015 5.82258 5.93766 5.96312 6.11503 6.48488 6.59628 6.63476 6.77087 6.85075 6.97938 7.04741 7.13933 7.25453 7.42128 7.50150 7.89550 8.10438 8.36770 8.47905 8.74125 8.80420 9.17817 9.71665 10.18790 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.017136 B = 0.002951 C = 0.002781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1633.585016 B = 9485.475996 C =10064.615199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.368 6.368 3 C 0.051 3.949 4 H 0.084 0.916 5 C 0.015 3.985 6 O -0.378 6.378 7 C 0.061 3.939 8 C -0.169 4.169 9 C 0.176 3.824 10 H 0.085 0.915 11 N -0.628 5.628 12 C 0.052 3.948 13 C 0.696 3.304 14 O -0.531 6.531 15 N -0.666 5.666 16 C 0.353 3.647 17 C -0.233 4.233 18 C 0.149 3.851 19 C -0.463 4.463 20 H 0.081 0.919 21 C 0.076 3.924 22 N -0.804 5.804 23 Si 0.915 3.085 24 H -0.269 1.269 25 H -0.278 1.278 26 H -0.262 1.262 27 C -0.277 4.277 28 C 0.117 3.883 29 N -0.547 5.547 30 H 0.043 0.957 31 H 0.088 0.912 32 H 0.044 0.956 33 H 0.091 0.909 34 H 0.086 0.914 35 H 0.055 0.945 36 H 0.096 0.904 37 H 0.104 0.896 38 H 0.078 0.922 39 H 0.048 0.952 40 H 0.062 0.938 41 H 0.112 0.888 42 H 0.404 0.596 43 H 0.124 0.876 44 H 0.279 0.721 45 H 0.103 0.897 46 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.844 6.320 -2.583 18.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.287 6.287 3 C -0.008 4.008 4 H 0.102 0.898 5 C -0.062 4.062 6 O -0.297 6.297 7 C -0.015 4.015 8 C -0.208 4.208 9 C 0.071 3.929 10 H 0.103 0.897 11 N -0.368 5.368 12 C -0.091 4.091 13 C 0.397 3.603 14 O -0.402 6.402 15 N -0.315 5.315 16 C 0.127 3.873 17 C -0.259 4.259 18 C 0.140 3.860 19 C -0.496 4.496 20 H 0.099 0.901 21 C -0.141 4.141 22 N -0.430 5.430 23 Si 0.739 3.261 24 H -0.194 1.194 25 H -0.203 1.203 26 H -0.186 1.186 27 C -0.301 4.301 28 C -0.037 4.037 29 N -0.265 5.265 30 H 0.061 0.939 31 H 0.107 0.893 32 H 0.063 0.937 33 H 0.109 0.891 34 H 0.104 0.896 35 H 0.073 0.927 36 H 0.114 0.886 37 H 0.122 0.878 38 H 0.097 0.903 39 H 0.066 0.934 40 H 0.081 0.919 41 H 0.130 0.870 42 H 0.240 0.760 43 H 0.142 0.858 44 H 0.090 0.910 45 H 0.121 0.879 46 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -17.172 7.477 -1.782 18.814 hybrid contribution 0.745 -1.554 -1.211 2.106 sum -16.428 5.922 -2.993 17.717 Atomic orbital electron populations 1.22898 0.81175 1.03081 1.00150 1.88007 1.19648 1.26590 1.94409 1.23015 0.94687 0.85639 0.97456 0.89779 1.23766 0.99407 0.87158 0.95884 1.87922 1.32403 1.29720 1.79661 1.22600 0.84351 1.02280 0.92297 1.22653 1.04516 0.95639 0.97996 1.20891 0.86538 0.88295 0.97145 0.89691 1.47024 1.16334 1.44584 1.28889 1.22544 1.03805 0.96532 0.86186 1.15965 0.79929 0.80815 0.83580 1.90977 1.72845 1.52159 1.24231 1.42715 1.19551 1.43965 1.25296 1.17999 0.85100 0.92632 0.91590 1.21511 0.96606 1.02498 1.05257 1.17572 0.89445 0.89819 0.89141 1.19510 1.23800 1.14597 0.91649 0.90127 1.25881 0.94760 0.96238 0.97217 1.69737 1.35642 1.32638 1.05010 0.86211 0.80228 0.81096 0.78549 1.19370 1.20289 1.18629 1.21780 1.02128 1.02940 1.03227 1.21507 0.89810 0.95011 0.97402 1.67219 1.17868 1.30979 1.10459 0.93875 0.89339 0.93750 0.89071 0.89629 0.92706 0.88605 0.87786 0.90350 0.93356 0.91916 0.86999 0.75989 0.85815 0.90969 0.87926 0.85973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 10.82 101.05 1.09 1.25 16 2 O -0.37 -3.64 7.60 -35.23 -0.27 -3.91 16 3 C 0.05 0.50 2.39 -26.59 -0.06 0.44 16 4 H 0.08 0.73 7.79 -51.93 -0.40 0.33 16 5 C 0.01 0.14 5.91 37.21 0.22 0.36 16 6 O -0.38 -4.40 10.77 -35.23 -0.38 -4.78 16 7 C 0.06 0.73 6.68 37.20 0.25 0.98 16 8 C -0.17 -2.14 5.54 -26.58 -0.15 -2.29 16 9 C 0.18 2.30 2.56 -67.73 -0.17 2.13 16 10 H 0.09 1.24 8.14 -51.93 -0.42 0.81 16 11 N -0.63 -9.34 2.37 -179.45 -0.43 -9.77 16 12 C 0.05 0.61 7.69 59.85 0.46 1.07 16 13 C 0.70 13.74 7.96 -86.92 -0.69 13.05 16 14 O -0.53 -12.37 13.08 5.30 0.07 -12.30 16 15 N -0.67 -13.62 5.22 -15.87 -0.08 -13.70 16 16 C 0.35 8.70 7.42 -154.68 -1.15 7.56 16 17 C -0.23 -5.96 8.56 -38.46 -0.33 -6.29 16 18 C 0.15 3.94 5.52 -106.55 -0.59 3.35 16 19 C -0.46 -12.02 9.11 -37.65 -0.34 -12.36 16 20 H 0.08 2.00 7.85 -52.48 -0.41 1.59 16 21 C 0.08 1.86 5.34 -17.35 -0.09 1.77 16 22 N -0.80 -20.12 11.03 55.55 0.61 -19.51 16 23 Si 0.91 18.26 29.56 -169.99 -5.03 13.24 16 24 H -0.27 -5.27 7.11 56.52 0.40 -4.87 16 25 H -0.28 -5.45 7.11 56.52 0.40 -5.05 16 26 H -0.26 -5.21 7.11 56.52 0.40 -4.80 16 27 C -0.28 -6.85 9.85 -39.07 -0.38 -7.23 16 28 C 0.12 2.83 11.10 -18.05 -0.20 2.63 16 29 N -0.55 -14.11 7.85 -12.76 -0.10 -14.21 16 30 H 0.04 0.23 7.93 -51.93 -0.41 -0.18 16 31 H 0.09 0.51 8.14 -51.93 -0.42 0.08 16 32 H 0.04 0.27 8.09 -51.93 -0.42 -0.15 16 33 H 0.09 0.71 7.93 -51.93 -0.41 0.30 16 34 H 0.09 0.84 3.74 -51.93 -0.19 0.65 16 35 H 0.05 0.73 7.75 -51.93 -0.40 0.33 16 36 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 37 H 0.10 1.63 6.51 -51.93 -0.34 1.30 16 38 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.05 0.52 6.96 -51.93 -0.36 0.16 16 40 H 0.06 0.74 6.71 -51.93 -0.35 0.39 16 41 H 0.11 1.17 3.46 -52.12 -0.18 0.99 16 42 H 0.40 7.05 6.61 -40.82 -0.27 6.78 16 43 H 0.12 3.15 6.58 -52.48 -0.35 2.81 16 44 H 0.28 6.38 8.29 -40.82 -0.34 6.04 16 45 H 0.10 2.33 8.06 -52.49 -0.42 1.90 16 46 H 0.12 2.59 8.06 -52.49 -0.42 2.17 16 LS Contribution 360.16 15.07 5.43 5.43 Total: -1.00 -32.04 360.16 -8.48 -40.52 By element: Atomic # 1 Polarization: 18.76 SS G_CDS: -6.17 Total: 12.59 kcal Atomic # 6 Polarization: 8.55 SS G_CDS: -2.14 Total: 6.41 kcal Atomic # 7 Polarization: -57.19 SS G_CDS: 0.00 Total: -57.19 kcal Atomic # 8 Polarization: -20.42 SS G_CDS: -0.58 Total: -21.00 kcal Atomic # 14 Polarization: 18.26 SS G_CDS: -5.03 Total: 13.24 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -32.04 -8.48 -40.52 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889253760.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.756 kcal (2) G-P(sol) polarization free energy of solvation -32.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds