Wall clock time and date at job start Tue Mar 31 2020 18:49:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42903 * 114.00002 * 2 1 4 4 H 1.08997 * 109.57093 * 30.15241 * 3 2 1 5 5 C 1.53094 * 109.52022 * 269.99948 * 3 2 1 6 6 O 1.42906 * 109.41344 * 182.48415 * 5 3 2 7 7 C 1.42904 * 114.09510 * 61.15688 * 6 5 3 8 8 C 1.53091 * 109.42620 * 298.83691 * 7 6 5 9 9 C 1.53170 * 109.52220 * 150.31065 * 3 2 1 10 10 H 1.09002 * 109.54648 * 296.84434 * 9 3 2 11 11 N 1.46508 * 109.54366 * 57.02133 * 9 3 2 12 12 C 1.46500 * 119.99819 * 4.82767 * 11 9 3 13 13 C 1.34774 * 119.99723 * 184.83183 * 11 9 3 14 14 O 1.21575 * 120.00182 * 359.97438 * 13 11 9 15 15 N 1.34776 * 119.99486 * 179.97438 * 13 11 9 16 16 C 1.39466 * 120.00122 * 185.09548 * 15 13 11 17 17 C 1.38639 * 119.65162 * 174.89085 * 16 15 13 18 18 C 1.40818 * 118.67659 * 179.76729 * 17 16 15 19 19 C 1.41544 * 121.00003 * 180.24144 * 18 17 16 20 20 H 1.08006 * 119.99657 * 214.15032 * 19 18 17 21 21 C 1.40031 * 120.00137 * 34.14208 * 19 18 17 22 22 N 1.30738 * 119.99814 * 5.58055 * 21 19 18 23 23 Si 1.86797 * 119.99838 * 185.57707 * 21 19 18 24 24 H 1.48498 * 109.47363 * 90.00299 * 23 21 19 25 25 H 1.48502 * 109.47088 * 209.99994 * 23 21 19 26 26 H 1.48506 * 109.47351 * 330.00187 * 23 21 19 27 27 C 1.41163 * 118.00152 * 0.49336 * 18 17 16 28 28 C 1.36595 * 119.12875 * 359.74297 * 27 18 17 29 29 N 1.32063 * 121.25587 * 0.02562 * 28 27 18 30 30 H 1.09005 * 109.46814 * 60.00394 * 1 2 3 31 31 H 1.09002 * 109.47313 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47548 * 300.00469 * 1 2 3 33 33 H 1.08992 * 109.48103 * 62.49990 * 5 3 2 34 34 H 1.09002 * 109.49018 * 302.47415 * 5 3 2 35 35 H 1.09004 * 109.48351 * 58.82642 * 7 6 5 36 36 H 1.09005 * 109.47845 * 178.84698 * 7 6 5 37 37 H 1.09004 * 109.52267 * 177.52408 * 8 7 6 38 38 H 1.09002 * 109.51935 * 297.71061 * 8 7 6 39 39 H 1.08994 * 109.46952 * 94.83135 * 12 11 9 40 40 H 1.08998 * 109.46631 * 214.83734 * 12 11 9 41 41 H 1.09006 * 109.46878 * 334.82931 * 12 11 9 42 42 H 0.97002 * 120.00401 * 5.09690 * 15 13 11 43 43 H 1.08008 * 120.65989 * 0.02562 * 17 16 15 44 44 H 0.97003 * 120.00141 * 179.97438 * 22 21 19 45 45 H 1.08000 * 120.43723 * 179.71582 * 27 18 17 46 46 H 1.08001 * 119.36839 * 179.97438 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3475 2.0002 0.5159 5 6 2.2183 1.7728 -1.4429 6 8 2.8525 3.0535 -1.4407 7 6 4.1430 3.0644 -0.8271 8 6 4.0125 2.6491 0.6406 9 6 3.3641 1.2630 0.7150 10 1 3.2170 0.9833 1.7582 11 7 4.2326 0.2802 0.0621 12 6 3.7839 -0.3989 -1.1560 13 6 5.4442 0.0010 0.5820 14 8 5.8167 0.5649 1.5926 15 7 6.2429 -0.9035 -0.0184 16 6 7.4499 -1.2712 0.5757 17 6 8.2151 -2.2783 0.0080 18 6 9.4326 -2.6297 0.6221 19 6 10.2548 -3.6472 0.0814 20 1 10.8287 -4.2838 0.7386 21 6 10.3240 -3.8284 -1.3054 22 7 9.7169 -2.9911 -2.1051 23 14 11.2840 -5.2664 -2.0125 24 1 10.3851 -6.4399 -2.1540 25 1 11.8245 -4.8935 -3.3445 26 1 12.4055 -5.6089 -1.1014 27 6 9.8059 -1.9405 1.7961 28 6 8.9836 -0.9653 2.2845 29 7 7.8504 -0.6582 1.6798 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3634 0.5139 0.8899 33 1 1.2532 1.8459 -1.9441 34 1 2.8482 1.0562 -1.9701 35 1 4.7982 2.3646 -1.3459 36 1 4.5644 4.0680 -0.8848 37 1 5.0010 2.6143 1.0987 38 1 3.3901 3.3710 1.1695 39 1 4.1623 0.1329 -2.0289 40 1 4.1612 -1.4215 -1.1617 41 1 2.6943 -0.4135 -1.1834 42 1 5.9783 -1.2987 -0.8638 43 1 7.8859 -2.7805 -0.8898 44 1 9.7651 -3.1164 -3.0658 45 1 10.7293 -2.1815 2.3018 46 1 9.2652 -0.4358 3.1827 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000889253760.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:49:45 Heat of formation + Delta-G solvation = -59.232043 kcal Electronic energy + Delta-G solvation = -30101.463972 eV Core-core repulsion = 25992.441744 eV Total energy + Delta-G solvation = -4109.022228 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.19722 -40.84934 -39.56885 -38.37574 -36.43482 -36.04946 -35.55695 -33.15446 -32.41592 -31.51161 -30.13942 -28.40371 -27.87943 -27.52126 -25.53898 -24.17404 -23.81537 -23.54050 -21.83342 -20.66523 -19.43952 -19.04604 -18.26324 -17.68344 -17.52839 -17.23734 -17.00269 -16.75535 -16.42215 -16.07575 -15.97648 -15.83701 -15.54858 -14.86797 -14.85126 -14.68932 -14.40973 -14.31886 -14.20963 -13.98466 -13.43070 -13.26441 -13.18032 -13.06118 -12.89232 -12.86619 -12.67779 -12.31218 -12.13796 -11.96867 -11.87255 -11.55083 -11.41708 -11.16225 -11.08566 -10.84978 -10.20568 -9.85437 -9.68948 -9.60438 -8.84611 -8.56226 -6.56793 0.81526 1.00933 1.42205 1.50928 1.53791 1.57598 2.22252 2.25117 2.41785 2.83026 2.89947 2.97105 3.48533 3.68282 3.73008 3.86141 3.93250 4.02374 4.10162 4.18285 4.34076 4.43140 4.46622 4.56108 4.65600 4.69864 4.71838 4.76357 4.77695 4.81349 4.88136 4.91254 4.92018 5.02730 5.08159 5.09078 5.24194 5.47038 5.52321 5.65078 5.76394 5.96132 5.97561 6.24077 6.25028 6.55070 6.78416 6.82354 6.88382 7.56425 7.86726 8.35681 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.017136 B = 0.002951 C = 0.002781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1633.585016 B = 9485.475996 C =10064.615199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.386 6.386 3 C 0.063 3.937 4 H 0.103 0.897 5 C 0.012 3.988 6 O -0.381 6.381 7 C 0.068 3.932 8 C -0.163 4.163 9 C 0.167 3.833 10 H 0.066 0.934 11 N -0.615 5.615 12 C 0.047 3.953 13 C 0.691 3.309 14 O -0.571 6.571 15 N -0.662 5.662 16 C 0.351 3.649 17 C -0.248 4.248 18 C 0.121 3.879 19 C -0.492 4.492 20 H 0.083 0.917 21 C 0.037 3.963 22 N -0.828 5.828 23 Si 0.990 3.010 24 H -0.261 1.261 25 H -0.269 1.269 26 H -0.260 1.260 27 C -0.289 4.289 28 C 0.112 3.888 29 N -0.570 5.570 30 H 0.062 0.938 31 H 0.096 0.904 32 H 0.050 0.950 33 H 0.119 0.881 34 H 0.083 0.917 35 H 0.037 0.963 36 H 0.108 0.892 37 H 0.068 0.932 38 H 0.099 0.901 39 H 0.062 0.938 40 H 0.061 0.939 41 H 0.133 0.867 42 H 0.416 0.584 43 H 0.118 0.882 44 H 0.289 0.711 45 H 0.118 0.882 46 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.341 6.083 -4.032 19.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.306 6.306 3 C 0.004 3.996 4 H 0.121 0.879 5 C -0.064 4.064 6 O -0.300 6.300 7 C -0.009 4.009 8 C -0.202 4.202 9 C 0.063 3.937 10 H 0.084 0.916 11 N -0.354 5.354 12 C -0.094 4.094 13 C 0.392 3.608 14 O -0.446 6.446 15 N -0.312 5.312 16 C 0.124 3.876 17 C -0.274 4.274 18 C 0.112 3.888 19 C -0.524 4.524 20 H 0.101 0.899 21 C -0.178 4.178 22 N -0.454 5.454 23 Si 0.811 3.189 24 H -0.185 1.185 25 H -0.194 1.194 26 H -0.184 1.184 27 C -0.313 4.313 28 C -0.041 4.041 29 N -0.290 5.290 30 H 0.080 0.920 31 H 0.115 0.885 32 H 0.069 0.931 33 H 0.137 0.863 34 H 0.101 0.899 35 H 0.055 0.945 36 H 0.126 0.874 37 H 0.087 0.913 38 H 0.118 0.882 39 H 0.080 0.920 40 H 0.079 0.921 41 H 0.150 0.850 42 H 0.254 0.746 43 H 0.136 0.864 44 H 0.100 0.900 45 H 0.136 0.864 46 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -18.737 7.250 -3.263 20.354 hybrid contribution 1.102 -1.445 -0.759 1.970 sum -17.635 5.805 -4.022 18.996 Atomic orbital electron populations 1.23105 0.79181 1.04117 1.01410 1.87947 1.21743 1.26387 1.94486 1.22876 0.92917 0.86321 0.97468 0.87896 1.23914 1.00495 0.86343 0.95667 1.87925 1.31878 1.30787 1.79432 1.22501 0.84584 1.02471 0.91361 1.22548 1.02939 0.96059 0.98658 1.21095 0.88138 0.87836 0.96640 0.91635 1.47019 1.14642 1.44418 1.29327 1.22808 1.05174 0.96308 0.85143 1.16156 0.81030 0.80312 0.83269 1.90940 1.74100 1.53482 1.26054 1.42631 1.18631 1.44218 1.25692 1.18196 0.86103 0.92098 0.91241 1.21459 0.97004 1.03435 1.05485 1.17996 0.90071 0.90607 0.90092 1.19794 1.24527 1.15163 0.92877 0.89899 1.26764 0.95468 0.98692 0.96911 1.69791 1.36058 1.33826 1.05765 0.85079 0.78686 0.77381 0.77796 1.18512 1.19364 1.18355 1.21966 1.02952 1.03188 1.03191 1.21963 0.89319 0.94848 0.98006 1.67347 1.18694 1.31750 1.11215 0.91986 0.88530 0.93090 0.86298 0.89893 0.94471 0.87418 0.91303 0.88239 0.91957 0.92056 0.84972 0.74585 0.86371 0.90041 0.86430 0.83313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 10.82 113.37 1.23 1.40 16 2 O -0.39 -6.72 7.60 -148.98 -1.13 -7.85 16 3 C 0.06 1.11 2.39 30.68 0.07 1.18 16 4 H 0.10 1.47 7.79 -2.39 -0.02 1.46 16 5 C 0.01 0.20 5.91 72.01 0.43 0.63 16 6 O -0.38 -7.97 10.77 -148.98 -1.60 -9.58 16 7 C 0.07 1.55 6.68 72.01 0.48 2.04 16 8 C -0.16 -4.11 5.54 30.69 0.17 -3.94 16 9 C 0.17 4.30 2.56 45.11 0.12 4.42 16 10 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 11 N -0.62 -18.31 2.37 -839.91 -1.99 -20.30 16 12 C 0.05 1.05 7.69 127.77 0.98 2.03 16 13 C 0.69 28.02 7.96 179.06 1.43 29.45 16 14 O -0.57 -27.66 13.08 -3.95 -0.05 -27.71 16 15 N -0.66 -27.76 5.22 -322.38 -1.68 -29.44 16 16 C 0.35 17.84 7.42 132.76 0.99 18.82 16 17 C -0.25 -13.07 8.56 23.00 0.20 -12.88 16 18 C 0.12 6.55 5.52 -21.11 -0.12 6.44 16 19 C -0.49 -25.87 9.11 23.52 0.21 -25.65 16 20 H 0.08 4.17 7.85 -2.91 -0.02 4.15 16 21 C 0.04 1.79 5.34 85.29 0.46 2.24 16 22 N -0.83 -41.58 11.03 21.84 0.24 -41.34 16 23 Si 0.99 36.80 29.56 68.60 2.03 38.83 16 24 H -0.26 -9.31 7.11 99.48 0.71 -8.60 16 25 H -0.27 -9.56 7.11 99.48 0.71 -8.85 16 26 H -0.26 -9.48 7.11 99.48 0.71 -8.78 16 27 C -0.29 -14.59 9.85 22.60 0.22 -14.37 16 28 C 0.11 5.53 11.10 84.27 0.94 6.46 16 29 N -0.57 -30.26 7.85 -194.27 -1.53 -31.78 16 30 H 0.06 0.42 7.93 -2.38 -0.02 0.40 16 31 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.05 0.47 8.09 -2.39 -0.02 0.45 16 33 H 0.12 1.35 7.93 -2.39 -0.02 1.33 16 34 H 0.08 1.42 3.74 -2.39 -0.01 1.41 16 35 H 0.04 0.98 7.75 -2.38 -0.02 0.96 16 36 H 0.11 2.19 8.14 -2.38 -0.02 2.17 16 37 H 0.07 2.26 6.51 -2.39 -0.02 2.25 16 38 H 0.10 2.04 8.14 -2.39 -0.02 2.02 16 39 H 0.06 1.26 6.96 -2.39 -0.02 1.24 16 40 H 0.06 1.40 6.71 -2.39 -0.02 1.39 16 41 H 0.13 2.49 3.46 -5.51 -0.02 2.47 16 42 H 0.42 14.80 6.61 -92.71 -0.61 14.18 16 43 H 0.12 6.22 6.58 -2.91 -0.02 6.20 16 44 H 0.29 13.06 8.29 -92.71 -0.77 12.29 16 45 H 0.12 5.39 8.06 -2.91 -0.02 5.37 16 46 H 0.15 6.32 8.06 -2.91 -0.02 6.30 16 Total: -1.00 -70.83 360.16 2.47 -68.36 By element: Atomic # 1 Polarization: 42.15 SS G_CDS: 0.40 Total: 42.55 kcal Atomic # 6 Polarization: 10.48 SS G_CDS: 7.79 Total: 18.27 kcal Atomic # 7 Polarization: -117.90 SS G_CDS: -4.96 Total: -122.87 kcal Atomic # 8 Polarization: -42.35 SS G_CDS: -2.79 Total: -45.14 kcal Atomic # 14 Polarization: 36.80 SS G_CDS: 2.03 Total: 38.83 kcal Total: -70.83 2.47 -68.36 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889253760.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.123 kcal (2) G-P(sol) polarization free energy of solvation -70.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds