Wall clock time and date at job start Tue Mar 31 2020 18:18:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.49041 * 111.00110 * 2 1 4 4 C 1.54941 * 106.85279 * 214.61955 * 3 2 1 5 5 C 1.53043 * 104.03301 * 357.71386 * 4 3 2 6 6 H 1.08996 * 110.52287 * 269.98272 * 5 4 3 7 7 C 1.51669 * 115.54047 * 142.79329 * 5 4 3 8 8 N 1.47747 * 106.55249 * 188.13626 * 7 5 4 9 9 C 1.34776 * 119.69485 * 231.68120 * 8 7 5 10 10 O 1.21586 * 119.99834 * 4.80256 * 9 8 7 11 11 N 1.34777 * 119.99994 * 184.80932 * 9 8 7 12 12 C 1.46498 * 119.99679 * 185.05758 * 11 9 8 13 13 H 1.08996 * 109.47824 * 325.00233 * 12 11 9 14 14 C 1.50701 * 109.47086 * 204.99815 * 12 11 9 15 15 H 1.08002 * 120.00194 * 354.19668 * 14 12 11 16 16 C 1.37879 * 119.99987 * 174.19691 * 14 12 11 17 17 N 1.31514 * 119.99937 * 332.98444 * 16 14 12 18 18 Si 1.86804 * 120.00099 * 152.98883 * 16 14 12 19 19 H 1.48495 * 109.47048 * 179.97438 * 18 16 14 20 20 H 1.48497 * 109.46795 * 299.99627 * 18 16 14 21 21 H 1.48503 * 109.47233 * 59.99448 * 18 16 14 22 22 C 1.53008 * 109.46923 * 85.00385 * 12 11 9 23 23 F 1.39896 * 109.46947 * 176.84046 * 22 12 11 24 24 F 1.39903 * 109.46806 * 296.83824 * 22 12 11 25 25 F 1.39895 * 109.46960 * 56.84118 * 22 12 11 26 26 C 1.46598 * 120.61238 * 51.40336 * 8 7 5 27 27 C 1.53934 * 110.64469 * 312.57405 * 26 8 7 28 28 C 1.46717 * 110.99945 * 244.43592 * 2 1 3 29 29 H 1.09000 * 109.91747 * 45.44601 * 28 2 1 30 30 H 1.09003 * 109.47044 * 175.56475 * 1 2 3 31 31 H 1.08991 * 109.47175 * 295.56368 * 1 2 3 32 32 H 1.08998 * 109.46754 * 55.57012 * 1 2 3 33 33 H 1.09000 * 109.97785 * 333.96686 * 3 2 1 34 34 H 1.08996 * 109.98310 * 95.22616 * 3 2 1 35 35 H 1.09001 * 110.51636 * 116.35093 * 4 3 2 36 36 H 1.08999 * 110.51675 * 239.07657 * 4 3 2 37 37 H 1.08993 * 110.01275 * 68.83833 * 7 5 4 38 38 H 1.08997 * 109.91937 * 307.38633 * 7 5 4 39 39 H 0.96996 * 120.00146 * 5.06230 * 11 9 8 40 40 H 0.96997 * 120.00310 * 354.50971 * 17 16 14 41 41 H 1.08997 * 109.23999 * 72.87310 * 26 8 7 42 42 H 1.08994 * 109.24191 * 192.26929 * 26 8 7 43 43 H 1.09001 * 109.89129 * 170.75707 * 27 26 8 44 44 H 1.08998 * 109.89352 * 291.86460 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0032 1.3914 0.0000 4 6 3.3034 1.3734 -0.8425 5 6 3.4678 -0.0953 -1.2398 6 1 4.0550 -0.6298 -0.4931 7 6 4.0091 -0.3385 -2.6357 8 7 3.9002 -1.7912 -2.8822 9 6 4.9786 -2.4789 -3.3070 10 8 6.0556 -1.9228 -3.4020 11 7 4.8631 -3.7831 -3.6267 12 6 6.0543 -4.5585 -3.9816 13 1 6.7541 -3.9222 -4.5232 14 6 5.6553 -5.7217 -4.8528 15 1 4.6108 -5.9236 -5.0390 16 6 6.6238 -6.5281 -5.4122 17 7 7.8222 -6.0443 -5.6556 18 14 6.2336 -8.3078 -5.8243 19 1 7.4344 -8.9546 -6.4116 20 1 5.8386 -9.0273 -4.5868 21 1 5.1174 -8.3562 -6.8026 22 6 6.7212 -5.0809 -2.7074 23 9 7.8169 -5.8808 -3.0489 24 9 7.1560 -4.0006 -1.9322 25 9 5.8003 -5.8389 -1.9763 26 6 2.6316 -2.4925 -2.6633 27 6 2.0258 -2.1062 -1.3019 28 6 1.9948 -0.5911 -1.2356 29 1 1.4566 -0.1931 -2.0959 30 1 -0.3633 -1.0246 -0.0795 31 1 -0.3633 0.4434 0.9270 32 1 -0.3633 0.5810 -0.8476 33 1 1.2773 2.0690 -0.4496 34 1 2.2238 1.7057 1.0201 35 1 3.1933 1.9989 -1.7284 36 1 4.1516 1.7043 -0.2431 37 1 5.0520 -0.0268 -2.6908 38 1 3.4142 0.2106 -3.3655 39 1 3.9913 -4.2083 -3.6217 40 1 8.0021 -5.1013 -5.5165 41 1 1.9326 -2.2263 -3.4561 42 1 2.8071 -3.5680 -2.6862 43 1 1.0133 -2.5017 -1.2209 44 1 2.6444 -2.5001 -0.4955 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932893749.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:18:40 Heat of formation + Delta-G solvation = -186.263677 kcal Electronic energy + Delta-G solvation = -31307.185581 eV Core-core repulsion = 26650.798108 eV Total energy + Delta-G solvation = -4656.387473 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.156 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -50.79405 -48.33196 -48.26904 -41.83648 -40.36799 -37.23198 -36.69510 -34.73035 -33.72994 -32.55227 -30.49085 -29.35286 -26.87295 -26.49962 -25.17295 -24.03827 -23.52975 -21.67437 -21.49332 -20.91732 -19.97599 -19.26833 -19.06245 -18.98635 -18.04380 -16.99715 -16.79024 -16.37398 -16.31702 -15.73665 -15.64595 -15.48413 -15.40083 -15.24080 -14.94975 -14.76691 -14.59506 -14.55336 -14.49410 -14.47671 -14.32341 -14.09641 -13.73381 -13.43669 -13.20913 -13.15162 -12.98770 -12.51774 -12.35133 -12.27988 -12.17681 -12.06100 -11.91562 -11.61596 -11.46096 -11.28758 -11.13762 -10.46856 -10.30595 -9.63603 -9.42284 -8.87261 -6.58629 1.48000 1.58177 1.63200 1.84772 1.95241 2.24001 2.50593 2.80724 2.88404 2.90910 3.42517 3.43492 3.58709 3.64153 3.72781 3.84028 4.00953 4.05609 4.21071 4.25060 4.39043 4.42763 4.51759 4.55687 4.60448 4.62161 4.71089 4.74705 4.82050 4.87432 4.97581 5.03228 5.08385 5.24285 5.28021 5.30730 5.33074 5.54959 5.85622 5.88416 6.05499 6.11859 6.28603 6.91603 7.15777 7.49380 8.46365 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.022274 B = 0.003311 C = 0.003188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1256.786094 B = 8455.438829 C = 8781.051133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.530 5.530 3 C 0.038 3.962 4 C -0.118 4.118 5 C -0.104 4.104 6 H 0.061 0.939 7 C 0.142 3.858 8 N -0.625 5.625 9 C 0.695 3.305 10 O -0.629 6.629 11 N -0.715 5.715 12 C 0.259 3.741 13 H 0.044 0.956 14 C -0.651 4.651 15 H 0.085 0.915 16 C 0.008 3.992 17 N -0.874 5.874 18 Si 1.105 2.895 19 H -0.285 1.285 20 H -0.270 1.270 21 H -0.257 1.257 22 C 0.414 3.586 23 F -0.188 7.188 24 F -0.208 7.208 25 F -0.189 7.189 26 C 0.108 3.892 27 C -0.107 4.107 28 C 0.067 3.933 29 H 0.063 0.937 30 H 0.072 0.928 31 H 0.075 0.925 32 H 0.035 0.965 33 H 0.062 0.938 34 H 0.082 0.918 35 H 0.085 0.915 36 H 0.076 0.924 37 H 0.072 0.928 38 H 0.088 0.912 39 H 0.410 0.590 40 H 0.262 0.738 41 H 0.091 0.909 42 H 0.080 0.920 43 H 0.100 0.900 44 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.504 11.370 8.350 22.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 N -0.254 5.254 3 C -0.090 4.090 4 C -0.156 4.156 5 C -0.124 4.124 6 H 0.080 0.920 7 C 0.020 3.980 8 N -0.362 5.362 9 C 0.396 3.604 10 O -0.510 6.510 11 N -0.371 5.371 12 C 0.150 3.850 13 H 0.061 0.939 14 C -0.687 4.687 15 H 0.103 0.897 16 C -0.200 4.200 17 N -0.503 5.503 18 Si 0.925 3.075 19 H -0.210 1.210 20 H -0.196 1.196 21 H -0.181 1.181 22 C 0.358 3.642 23 F -0.169 7.169 24 F -0.190 7.190 25 F -0.170 7.170 26 C -0.015 4.015 27 C -0.146 4.146 28 C -0.042 4.042 29 H 0.080 0.920 30 H 0.091 0.909 31 H 0.094 0.906 32 H 0.054 0.946 33 H 0.080 0.920 34 H 0.101 0.899 35 H 0.104 0.896 36 H 0.095 0.905 37 H 0.090 0.910 38 H 0.106 0.894 39 H 0.249 0.751 40 H 0.072 0.928 41 H 0.109 0.891 42 H 0.098 0.902 43 H 0.118 0.882 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -15.923 10.112 8.232 20.581 hybrid contribution -0.511 1.598 0.299 1.704 sum -16.434 11.710 8.531 21.908 Atomic orbital electron populations 1.22575 0.86637 1.02564 1.01573 1.64649 1.09392 1.15823 1.35547 1.23273 0.95608 0.89126 1.00949 1.22211 0.98272 0.94543 1.00594 1.22058 0.96563 0.97851 0.95958 0.92028 1.21364 1.02386 0.78272 0.95978 1.47470 1.09779 1.09135 1.69812 1.16245 0.84333 0.81707 0.78078 1.90857 1.28064 1.69678 1.62369 1.45048 1.10777 1.08468 1.72807 1.19160 0.86087 0.92585 0.87170 0.93851 1.21830 0.97029 1.14117 1.35696 0.89720 1.27318 0.92180 1.08788 0.91691 1.70863 1.24660 1.16042 1.38732 0.83141 0.76557 0.70139 0.77684 1.21036 1.19565 1.18127 1.23094 0.77230 0.75324 0.88591 1.93125 1.56385 1.75166 1.92240 1.93090 1.90728 1.56378 1.78770 1.93016 1.66568 1.77463 1.79991 1.21862 0.84363 0.96839 0.98421 1.21620 1.02168 0.94902 0.95917 1.22348 0.94299 0.95388 0.92120 0.91959 0.90876 0.90634 0.94605 0.91981 0.89926 0.89639 0.90477 0.90967 0.89388 0.75130 0.92846 0.89131 0.90213 0.88162 0.92464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.18 9.41 127.69 1.20 1.39 16 2 N -0.53 -9.07 5.48 -885.26 -4.85 -13.92 16 3 C 0.04 0.55 6.74 86.55 0.58 1.13 16 4 C -0.12 -1.89 6.60 31.27 0.21 -1.68 16 5 C -0.10 -2.26 2.75 -10.38 -0.03 -2.29 16 6 H 0.06 1.70 8.05 -2.39 -0.02 1.68 16 7 C 0.14 3.66 5.95 85.70 0.51 4.17 16 8 N -0.62 -18.83 3.01 -837.08 -2.52 -21.35 16 9 C 0.69 28.70 7.79 179.05 1.40 30.10 16 10 O -0.63 -31.45 14.51 -3.99 -0.06 -31.51 16 11 N -0.72 -29.91 4.76 -461.40 -2.20 -32.10 16 12 C 0.26 13.10 2.01 44.25 0.09 13.19 16 13 H 0.04 2.53 6.40 -2.39 -0.02 2.52 16 14 C -0.65 -33.38 8.33 25.60 0.21 -33.17 16 15 H 0.08 4.06 7.85 -2.91 -0.02 4.03 16 16 C 0.01 0.43 4.26 84.66 0.36 0.79 16 17 N -0.87 -50.39 12.30 21.45 0.26 -50.13 16 18 Si 1.11 46.12 29.98 68.60 2.06 48.18 16 19 H -0.28 -12.12 7.11 99.48 0.71 -11.42 16 20 H -0.27 -10.79 7.11 99.48 0.71 -10.08 16 21 H -0.26 -9.58 7.11 99.48 0.71 -8.87 16 22 C 0.41 21.17 2.82 71.98 0.20 21.37 16 23 F -0.19 -10.30 14.65 44.97 0.66 -9.64 16 24 F -0.21 -10.72 15.98 44.97 0.72 -10.01 16 25 F -0.19 -8.96 16.97 44.97 0.76 -8.19 16 26 C 0.11 2.37 6.20 86.68 0.54 2.90 16 27 C -0.11 -2.04 5.99 30.48 0.18 -1.85 16 28 C 0.07 1.21 1.63 45.35 0.07 1.29 16 29 H 0.06 1.01 7.92 -2.39 -0.02 0.99 16 30 H 0.07 0.86 7.82 -2.39 -0.02 0.84 16 31 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.04 0.39 7.95 -2.39 -0.02 0.37 16 33 H 0.06 0.72 7.69 -2.39 -0.02 0.70 16 34 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.09 1.14 8.03 -2.39 -0.02 1.12 16 36 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 37 H 0.07 2.26 6.98 -2.39 -0.02 2.24 16 38 H 0.09 1.83 8.12 -2.39 -0.02 1.81 16 39 H 0.41 14.55 6.10 -92.71 -0.57 13.98 16 40 H 0.26 15.70 7.21 -92.71 -0.67 15.03 16 41 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 42 H 0.08 1.82 5.76 -2.39 -0.01 1.81 16 43 H 0.10 1.43 7.84 -2.39 -0.02 1.41 16 44 H 0.06 1.35 8.06 -2.39 -0.02 1.33 16 Total: -1.00 -68.05 353.78 0.93 -67.12 By element: Atomic # 1 Polarization: 23.64 SS G_CDS: 0.57 Total: 24.21 kcal Atomic # 6 Polarization: 31.82 SS G_CDS: 5.53 Total: 37.34 kcal Atomic # 7 Polarization: -108.20 SS G_CDS: -9.30 Total: -117.50 kcal Atomic # 8 Polarization: -31.45 SS G_CDS: -0.06 Total: -31.51 kcal Atomic # 9 Polarization: -29.98 SS G_CDS: 2.14 Total: -27.84 kcal Atomic # 14 Polarization: 46.12 SS G_CDS: 2.06 Total: 48.18 kcal Total: -68.05 0.93 -67.12 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932893749.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -119.142 kcal (2) G-P(sol) polarization free energy of solvation -68.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -187.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -186.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds