Wall clock time and date at job start Tue Mar 31 2020 18:18:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.49040 * 110.99975 * 2 1 4 4 C 1.54938 * 106.84966 * 214.61709 * 3 2 1 5 5 C 1.53035 * 104.03589 * 357.71091 * 4 3 2 6 6 H 1.08991 * 110.52532 * 269.98394 * 5 4 3 7 7 C 1.51663 * 115.54200 * 142.79069 * 5 4 3 8 8 N 1.47748 * 106.55637 * 188.14034 * 7 5 4 9 9 C 1.34778 * 119.69169 * 231.68260 * 8 7 5 10 10 O 1.21586 * 120.00198 * 5.03678 * 9 8 7 11 11 N 1.34785 * 119.99994 * 184.76907 * 9 8 7 12 12 C 1.46492 * 120.00136 * 175.06102 * 11 9 8 13 13 H 1.08999 * 109.47536 * 34.99198 * 12 11 9 14 14 C 1.50706 * 109.47285 * 154.99610 * 12 11 9 15 15 H 1.08002 * 119.99553 * 359.97438 * 14 12 11 16 16 C 1.37876 * 119.99861 * 179.97438 * 14 12 11 17 17 N 1.31509 * 120.00261 * 0.02562 * 16 14 12 18 18 Si 1.86801 * 119.99502 * 179.97438 * 16 14 12 19 19 H 1.48503 * 109.46952 * 90.00323 * 18 16 14 20 20 H 1.48495 * 109.47176 * 209.99950 * 18 16 14 21 21 H 1.48504 * 109.47357 * 330.00441 * 18 16 14 22 22 C 1.53004 * 109.46819 * 274.99240 * 12 11 9 23 23 F 1.39900 * 109.46934 * 60.00438 * 22 12 11 24 24 F 1.39906 * 109.47074 * 179.97438 * 22 12 11 25 25 F 1.39895 * 109.47328 * 300.00271 * 22 12 11 26 26 C 1.46591 * 120.61322 * 51.40703 * 8 7 5 27 27 C 1.53939 * 110.64152 * 312.57231 * 26 8 7 28 28 C 1.46717 * 111.00261 * 244.43252 * 2 1 3 29 29 H 1.09001 * 109.91149 * 45.44415 * 28 2 1 30 30 H 1.09005 * 109.46675 * 175.56378 * 1 2 3 31 31 H 1.08998 * 109.47163 * 295.56705 * 1 2 3 32 32 H 1.09005 * 109.47111 * 55.57273 * 1 2 3 33 33 H 1.09006 * 109.98024 * 333.96497 * 3 2 1 34 34 H 1.08994 * 109.98652 * 95.22305 * 3 2 1 35 35 H 1.09001 * 110.51831 * 116.35297 * 4 3 2 36 36 H 1.09001 * 110.51460 * 239.07330 * 4 3 2 37 37 H 1.09010 * 110.01357 * 68.83807 * 7 5 4 38 38 H 1.09005 * 109.92500 * 307.39428 * 7 5 4 39 39 H 0.96999 * 119.99343 * 355.05021 * 11 9 8 40 40 H 0.97000 * 119.99840 * 179.97438 * 17 16 14 41 41 H 1.08998 * 109.24519 * 72.87325 * 26 8 7 42 42 H 1.09001 * 109.24444 * 192.31321 * 26 8 7 43 43 H 1.08995 * 109.89148 * 170.75905 * 27 26 8 44 44 H 1.08998 * 109.89553 * 291.86559 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0031 1.3914 0.0000 4 6 3.3034 1.3734 -0.8424 5 6 3.4679 -0.0953 -1.2397 6 1 4.0550 -0.6298 -0.4930 7 6 4.0091 -0.3386 -2.6354 8 7 3.9002 -1.7913 -2.8820 9 6 4.9787 -2.4790 -3.3067 10 8 6.0567 -1.9239 -3.3976 11 7 4.8635 -3.7835 -3.6256 12 6 6.0079 -4.5036 -4.1894 13 1 6.9289 -4.1285 -3.7433 14 6 5.8700 -5.9752 -3.8950 15 1 5.0156 -6.3376 -3.3427 16 6 6.8347 -6.8587 -4.3307 17 7 7.8753 -6.4172 -5.0027 18 14 6.6641 -8.6826 -3.9650 19 1 5.9174 -9.3406 -5.0672 20 1 8.0131 -9.2922 -3.8481 21 1 5.9261 -8.8649 -2.6893 22 6 6.0501 -4.2883 -5.7036 23 9 6.1781 -2.9222 -5.9770 24 9 7.1434 -4.9755 -6.2421 25 9 4.8680 -4.7697 -6.2763 26 6 2.6317 -2.4926 -2.6631 27 6 2.0259 -2.1062 -1.3017 28 6 1.9949 -0.5911 -1.2356 29 1 1.4567 -0.1931 -2.0958 30 1 -0.3633 -1.0247 -0.0795 31 1 -0.3633 0.4435 0.9270 32 1 -0.3633 0.5810 -0.8477 33 1 1.2773 2.0690 -0.4497 34 1 2.2237 1.7058 1.0200 35 1 3.1933 1.9988 -1.7283 36 1 4.1515 1.7043 -0.2430 37 1 5.0522 -0.0268 -2.6906 38 1 3.4143 0.2105 -3.3654 39 1 4.0228 -4.2454 -3.4816 40 1 8.5542 -7.0388 -5.3089 41 1 1.9326 -2.2264 -3.4559 42 1 2.8073 -3.5681 -2.6853 43 1 1.0134 -2.5017 -1.2207 44 1 2.6444 -2.5001 -0.4953 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932893750.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:18:45 Heat of formation + Delta-G solvation = -143.832262 kcal Electronic energy + Delta-G solvation = -31176.038688 eV Core-core repulsion = 26521.491179 eV Total energy + Delta-G solvation = -4654.547509 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.156 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -48.31300 -45.96971 -45.57733 -40.64336 -39.01123 -35.89254 -34.69258 -33.12836 -32.42072 -31.39588 -29.29517 -27.91981 -26.03545 -24.57131 -24.01483 -23.03017 -21.48856 -20.76021 -20.36135 -19.38634 -18.14446 -16.88293 -16.75702 -16.58602 -16.01369 -15.76106 -15.57413 -15.34466 -14.92163 -14.77809 -14.61259 -14.29809 -13.69065 -13.47290 -13.28804 -13.09072 -12.85984 -12.70488 -12.51335 -12.42483 -12.37226 -12.31835 -12.21479 -11.92927 -11.78048 -11.57231 -11.42549 -11.38727 -11.13772 -11.10476 -10.87009 -10.76656 -10.75460 -10.37165 -10.22823 -9.62241 -9.46658 -8.72496 -8.71298 -8.50087 -8.09262 -6.21498 -4.45276 3.01094 3.20015 3.26407 3.29164 3.60342 3.79962 4.18384 4.26436 4.39690 4.53030 4.62551 4.69046 4.89324 4.95505 4.98019 5.02695 5.11943 5.17645 5.26896 5.31115 5.36654 5.46952 5.56603 5.61265 5.68517 5.71156 5.76587 5.84507 5.87146 5.91744 5.97929 6.08706 6.21823 6.25550 6.60433 6.71501 6.81958 6.90711 7.22741 7.37261 7.61751 7.67053 8.50842 8.61623 9.15335 9.26220 10.70137 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.019687 B = 0.003317 C = 0.003068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1421.903943 B = 8438.593245 C = 9123.989335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.512 5.512 3 C 0.036 3.964 4 C -0.122 4.122 5 C -0.106 4.106 6 H 0.091 0.909 7 C 0.144 3.856 8 N -0.635 5.635 9 C 0.702 3.298 10 O -0.583 6.583 11 N -0.726 5.726 12 C 0.260 3.740 13 H 0.086 0.914 14 C -0.551 4.551 15 H 0.076 0.924 16 C 0.065 3.935 17 N -0.839 5.839 18 Si 0.915 3.085 19 H -0.277 1.277 20 H -0.283 1.283 21 H -0.270 1.270 22 C 0.416 3.584 23 F -0.218 7.218 24 F -0.137 7.137 25 F -0.210 7.210 26 C 0.115 3.885 27 C -0.114 4.114 28 C 0.060 3.940 29 H 0.050 0.950 30 H 0.069 0.931 31 H 0.067 0.933 32 H 0.027 0.973 33 H 0.046 0.954 34 H 0.079 0.921 35 H 0.070 0.930 36 H 0.077 0.923 37 H 0.099 0.901 38 H 0.061 0.939 39 H 0.393 0.607 40 H 0.268 0.732 41 H 0.062 0.938 42 H 0.084 0.916 43 H 0.073 0.927 44 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.560 11.230 7.355 19.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 N -0.236 5.236 3 C -0.092 4.092 4 C -0.161 4.161 5 C -0.126 4.126 6 H 0.109 0.891 7 C 0.021 3.979 8 N -0.374 5.374 9 C 0.404 3.596 10 O -0.460 6.460 11 N -0.381 5.381 12 C 0.154 3.846 13 H 0.104 0.896 14 C -0.588 4.588 15 H 0.094 0.906 16 C -0.144 4.144 17 N -0.473 5.473 18 Si 0.741 3.259 19 H -0.203 1.203 20 H -0.208 1.208 21 H -0.195 1.195 22 C 0.359 3.641 23 F -0.200 7.200 24 F -0.118 7.118 25 F -0.192 7.192 26 C -0.010 4.010 27 C -0.153 4.153 28 C -0.049 4.049 29 H 0.068 0.932 30 H 0.088 0.912 31 H 0.086 0.914 32 H 0.045 0.955 33 H 0.064 0.936 34 H 0.098 0.902 35 H 0.089 0.911 36 H 0.095 0.905 37 H 0.117 0.883 38 H 0.079 0.921 39 H 0.230 0.770 40 H 0.079 0.921 41 H 0.080 0.920 42 H 0.102 0.898 43 H 0.092 0.908 44 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -12.401 11.269 7.598 18.398 hybrid contribution -0.976 -0.669 -0.852 1.458 sum -13.377 10.600 6.746 18.353 Atomic orbital electron populations 1.22533 0.88074 1.02043 1.00747 1.64675 1.07943 1.15026 1.35930 1.23250 0.95823 0.89426 1.00703 1.22203 0.97679 0.96333 0.99838 1.22194 0.96013 0.96102 0.98273 0.89085 1.21194 1.03250 0.79673 0.93801 1.47376 1.09804 1.08217 1.72006 1.16007 0.83669 0.81970 0.77965 1.90890 1.25538 1.69100 1.60461 1.45465 1.16826 1.08514 1.67309 1.19615 0.87668 0.93776 0.83545 0.89594 1.20865 1.09665 0.88729 1.39546 0.90574 1.25072 0.94986 1.00354 0.93953 1.70403 1.09495 1.35165 1.32202 0.86220 0.77725 0.83024 0.78898 1.20252 1.20802 1.19492 1.23207 0.73677 0.71831 0.95353 1.93062 1.95840 1.35517 1.95619 1.93403 1.52771 1.77614 1.88029 1.92979 1.50080 1.88499 1.87667 1.21565 0.85761 0.97280 0.96368 1.21699 1.01435 0.94340 0.97853 1.22431 0.95395 0.95855 0.91200 0.93169 0.91204 0.91407 0.95493 0.93595 0.90227 0.91117 0.90470 0.88299 0.92064 0.77050 0.92137 0.92016 0.89794 0.90794 0.90285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.12 9.41 60.07 0.57 0.68 16 2 N -0.51 -5.00 5.48 -231.16 -1.27 -6.27 16 3 C 0.04 0.30 6.74 -1.61 -0.01 0.29 16 4 C -0.12 -1.08 6.60 -25.69 -0.17 -1.25 16 5 C -0.11 -1.18 2.75 -89.99 -0.25 -1.43 16 6 H 0.09 1.19 8.05 -51.93 -0.42 0.77 16 7 C 0.14 1.93 5.95 -4.03 -0.02 1.90 16 8 N -0.64 -9.86 3.01 -178.54 -0.54 -10.40 16 9 C 0.70 14.42 7.71 -86.91 -0.67 13.75 16 10 O -0.58 -14.18 14.53 5.29 0.08 -14.10 16 11 N -0.73 -15.22 4.87 -59.81 -0.29 -15.51 16 12 C 0.26 6.55 2.23 -69.08 -0.15 6.40 16 13 H 0.09 2.44 7.51 -51.93 -0.39 2.05 16 14 C -0.55 -14.10 8.47 -34.44 -0.29 -14.39 16 15 H 0.08 1.83 7.74 -52.49 -0.41 1.43 16 16 C 0.07 1.70 5.20 -17.82 -0.09 1.60 16 17 N -0.84 -23.10 9.50 55.43 0.53 -22.58 16 18 Si 0.91 20.09 29.54 -169.99 -5.02 15.07 16 19 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 20 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 21 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 22 C 0.42 10.80 2.81 37.16 0.10 10.90 16 23 F -0.22 -5.66 15.89 2.25 0.04 -5.62 16 24 F -0.14 -3.83 12.91 2.25 0.03 -3.80 16 25 F -0.21 -5.23 16.94 2.25 0.04 -5.20 16 26 C 0.11 1.39 6.26 -3.50 -0.02 1.36 16 27 C -0.11 -1.19 5.99 -26.91 -0.16 -1.35 16 28 C 0.06 0.61 1.63 -67.19 -0.11 0.50 16 29 H 0.05 0.52 7.92 -51.93 -0.41 0.11 16 30 H 0.07 0.52 7.82 -51.93 -0.41 0.12 16 31 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.03 0.20 7.95 -51.93 -0.41 -0.21 16 33 H 0.05 0.35 7.69 -51.93 -0.40 -0.05 16 34 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 35 H 0.07 0.57 8.03 -51.93 -0.42 0.15 16 36 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 37 H 0.10 1.52 6.98 -51.92 -0.36 1.15 16 38 H 0.06 0.73 8.12 -51.93 -0.42 0.31 16 39 H 0.39 7.15 5.99 -40.82 -0.24 6.90 16 40 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 41 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.08 1.02 5.64 -51.93 -0.29 0.72 16 43 H 0.07 0.65 7.84 -51.93 -0.41 0.24 16 44 H 0.08 0.93 8.06 -51.93 -0.42 0.51 16 LS Contribution 351.93 15.07 5.30 5.30 Total: -1.00 -30.73 351.93 -8.62 -39.35 By element: Atomic # 1 Polarization: 11.00 SS G_CDS: -6.23 Total: 4.76 kcal Atomic # 6 Polarization: 20.26 SS G_CDS: -1.28 Total: 18.98 kcal Atomic # 7 Polarization: -53.19 SS G_CDS: -1.57 Total: -54.76 kcal Atomic # 8 Polarization: -14.18 SS G_CDS: 0.08 Total: -14.10 kcal Atomic # 9 Polarization: -14.72 SS G_CDS: 0.10 Total: -14.61 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -5.02 Total: 15.07 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -30.73 -8.62 -39.35 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932893750.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.478 kcal (2) G-P(sol) polarization free energy of solvation -30.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds