Wall clock time and date at job start Tue Mar 31 2020 18:18:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.49040 * 110.99975 * 2 1 4 4 C 1.54938 * 106.84966 * 214.61709 * 3 2 1 5 5 C 1.53035 * 104.03589 * 357.71091 * 4 3 2 6 6 H 1.08991 * 110.52532 * 269.98394 * 5 4 3 7 7 C 1.51663 * 115.54200 * 142.79069 * 5 4 3 8 8 N 1.47748 * 106.55637 * 188.14034 * 7 5 4 9 9 C 1.34778 * 119.69169 * 231.68260 * 8 7 5 10 10 O 1.21586 * 120.00198 * 5.03678 * 9 8 7 11 11 N 1.34785 * 119.99994 * 184.76907 * 9 8 7 12 12 C 1.46492 * 120.00136 * 175.06102 * 11 9 8 13 13 H 1.08999 * 109.47536 * 34.99198 * 12 11 9 14 14 C 1.50706 * 109.47285 * 154.99610 * 12 11 9 15 15 H 1.08002 * 119.99553 * 359.97438 * 14 12 11 16 16 C 1.37876 * 119.99861 * 179.97438 * 14 12 11 17 17 N 1.31509 * 120.00261 * 0.02562 * 16 14 12 18 18 Si 1.86801 * 119.99502 * 179.97438 * 16 14 12 19 19 H 1.48503 * 109.46952 * 90.00323 * 18 16 14 20 20 H 1.48495 * 109.47176 * 209.99950 * 18 16 14 21 21 H 1.48504 * 109.47357 * 330.00441 * 18 16 14 22 22 C 1.53004 * 109.46819 * 274.99240 * 12 11 9 23 23 F 1.39900 * 109.46934 * 60.00438 * 22 12 11 24 24 F 1.39906 * 109.47074 * 179.97438 * 22 12 11 25 25 F 1.39895 * 109.47328 * 300.00271 * 22 12 11 26 26 C 1.46591 * 120.61322 * 51.40703 * 8 7 5 27 27 C 1.53939 * 110.64152 * 312.57231 * 26 8 7 28 28 C 1.46717 * 111.00261 * 244.43252 * 2 1 3 29 29 H 1.09001 * 109.91149 * 45.44415 * 28 2 1 30 30 H 1.09005 * 109.46675 * 175.56378 * 1 2 3 31 31 H 1.08998 * 109.47163 * 295.56705 * 1 2 3 32 32 H 1.09005 * 109.47111 * 55.57273 * 1 2 3 33 33 H 1.09006 * 109.98024 * 333.96497 * 3 2 1 34 34 H 1.08994 * 109.98652 * 95.22305 * 3 2 1 35 35 H 1.09001 * 110.51831 * 116.35297 * 4 3 2 36 36 H 1.09001 * 110.51460 * 239.07330 * 4 3 2 37 37 H 1.09010 * 110.01357 * 68.83807 * 7 5 4 38 38 H 1.09005 * 109.92500 * 307.39428 * 7 5 4 39 39 H 0.96999 * 119.99343 * 355.05021 * 11 9 8 40 40 H 0.97000 * 119.99840 * 179.97438 * 17 16 14 41 41 H 1.08998 * 109.24519 * 72.87325 * 26 8 7 42 42 H 1.09001 * 109.24444 * 192.31321 * 26 8 7 43 43 H 1.08995 * 109.89148 * 170.75905 * 27 26 8 44 44 H 1.08998 * 109.89553 * 291.86559 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0031 1.3914 0.0000 4 6 3.3034 1.3734 -0.8424 5 6 3.4679 -0.0953 -1.2397 6 1 4.0550 -0.6298 -0.4930 7 6 4.0091 -0.3386 -2.6354 8 7 3.9002 -1.7913 -2.8820 9 6 4.9787 -2.4790 -3.3067 10 8 6.0567 -1.9239 -3.3976 11 7 4.8635 -3.7835 -3.6256 12 6 6.0079 -4.5036 -4.1894 13 1 6.9289 -4.1285 -3.7433 14 6 5.8700 -5.9752 -3.8950 15 1 5.0156 -6.3376 -3.3427 16 6 6.8347 -6.8587 -4.3307 17 7 7.8753 -6.4172 -5.0027 18 14 6.6641 -8.6826 -3.9650 19 1 5.9174 -9.3406 -5.0672 20 1 8.0131 -9.2922 -3.8481 21 1 5.9261 -8.8649 -2.6893 22 6 6.0501 -4.2883 -5.7036 23 9 6.1781 -2.9222 -5.9770 24 9 7.1434 -4.9755 -6.2421 25 9 4.8680 -4.7697 -6.2763 26 6 2.6317 -2.4926 -2.6631 27 6 2.0259 -2.1062 -1.3017 28 6 1.9949 -0.5911 -1.2356 29 1 1.4567 -0.1931 -2.0958 30 1 -0.3633 -1.0247 -0.0795 31 1 -0.3633 0.4435 0.9270 32 1 -0.3633 0.5810 -0.8477 33 1 1.2773 2.0690 -0.4497 34 1 2.2237 1.7058 1.0200 35 1 3.1933 1.9988 -1.7283 36 1 4.1515 1.7043 -0.2430 37 1 5.0522 -0.0268 -2.6906 38 1 3.4143 0.2105 -3.3654 39 1 4.0228 -4.2454 -3.4816 40 1 8.5542 -7.0388 -5.3089 41 1 1.9326 -2.2264 -3.4559 42 1 2.8073 -3.5681 -2.6853 43 1 1.0134 -2.5017 -1.2207 44 1 2.6444 -2.5001 -0.4953 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932893750.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:18:44 Heat of formation + Delta-G solvation = -164.551738 kcal Electronic energy + Delta-G solvation = -31176.937152 eV Core-core repulsion = 26521.491179 eV Total energy + Delta-G solvation = -4655.445973 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.156 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -50.41106 -48.04772 -47.71824 -41.76512 -40.28891 -37.10544 -36.49978 -34.58636 -33.69600 -32.50851 -30.54278 -29.38364 -26.85351 -26.57589 -25.11817 -23.98173 -23.30940 -21.59976 -21.43312 -20.87219 -19.63064 -18.88879 -18.71856 -18.60146 -17.65133 -17.06532 -16.66191 -16.51356 -16.34084 -16.20345 -15.55503 -15.43530 -15.10240 -14.98055 -14.61477 -14.51244 -14.47440 -14.44013 -14.29047 -14.07555 -14.00689 -13.90722 -13.57465 -13.32238 -13.16720 -13.01043 -12.73338 -12.64854 -12.31103 -12.26917 -12.18199 -12.13489 -11.98630 -11.59208 -11.53624 -11.19472 -11.08037 -10.68316 -10.17921 -9.55022 -9.39838 -8.19967 -6.51067 1.47190 1.48655 1.57935 1.64519 2.08710 2.37233 2.55426 2.93281 2.94141 2.96431 3.46882 3.69149 3.79046 3.87242 3.87818 4.03256 4.10315 4.18658 4.25005 4.29958 4.43071 4.48286 4.55422 4.58793 4.66293 4.74099 4.77336 4.84498 4.88669 4.95205 5.00967 5.06054 5.12591 5.28517 5.32480 5.43610 5.49221 5.63606 5.66513 5.90815 5.97390 6.14302 6.53803 7.03289 7.19336 7.60394 8.72930 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.019687 B = 0.003317 C = 0.003068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1421.903943 B = 8438.593245 C = 9123.989335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 N -0.528 5.528 3 C 0.038 3.962 4 C -0.118 4.118 5 C -0.102 4.102 6 H 0.066 0.934 7 C 0.142 3.858 8 N -0.626 5.626 9 C 0.696 3.304 10 O -0.629 6.629 11 N -0.721 5.721 12 C 0.269 3.731 13 H 0.045 0.955 14 C -0.561 4.561 15 H 0.091 0.909 16 C 0.015 3.985 17 N -0.875 5.875 18 Si 0.984 3.016 19 H -0.273 1.273 20 H -0.283 1.283 21 H -0.257 1.257 22 C 0.413 3.587 23 F -0.220 7.220 24 F -0.150 7.150 25 F -0.203 7.203 26 C 0.109 3.891 27 C -0.106 4.106 28 C 0.066 3.934 29 H 0.059 0.941 30 H 0.073 0.927 31 H 0.075 0.925 32 H 0.033 0.967 33 H 0.060 0.940 34 H 0.084 0.916 35 H 0.082 0.918 36 H 0.078 0.922 37 H 0.072 0.928 38 H 0.082 0.918 39 H 0.407 0.593 40 H 0.269 0.731 41 H 0.084 0.916 42 H 0.083 0.917 43 H 0.099 0.901 44 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.394 11.095 8.204 21.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 N -0.252 5.252 3 C -0.090 4.090 4 C -0.157 4.157 5 C -0.123 4.123 6 H 0.085 0.915 7 C 0.020 3.980 8 N -0.364 5.364 9 C 0.398 3.602 10 O -0.510 6.510 11 N -0.377 5.377 12 C 0.161 3.839 13 H 0.063 0.937 14 C -0.597 4.597 15 H 0.109 0.891 16 C -0.190 4.190 17 N -0.509 5.509 18 Si 0.807 3.193 19 H -0.198 1.198 20 H -0.208 1.208 21 H -0.180 1.180 22 C 0.357 3.643 23 F -0.202 7.202 24 F -0.131 7.131 25 F -0.184 7.184 26 C -0.014 4.014 27 C -0.145 4.145 28 C -0.043 4.043 29 H 0.076 0.924 30 H 0.092 0.908 31 H 0.094 0.906 32 H 0.052 0.948 33 H 0.078 0.922 34 H 0.102 0.898 35 H 0.101 0.899 36 H 0.097 0.903 37 H 0.091 0.909 38 H 0.101 0.899 39 H 0.246 0.754 40 H 0.078 0.922 41 H 0.102 0.898 42 H 0.101 0.899 43 H 0.117 0.883 44 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -15.317 11.160 8.480 20.763 hybrid contribution -0.125 -0.535 -1.103 1.232 sum -15.442 10.626 7.377 20.144 Atomic orbital electron populations 1.22578 0.86738 1.02562 1.01500 1.64658 1.09291 1.15753 1.35478 1.23274 0.95591 0.89145 1.00971 1.22211 0.98296 0.94666 1.00509 1.22051 0.96508 0.97766 0.95931 0.91520 1.21338 1.02327 0.78427 0.95939 1.47469 1.09621 1.08959 1.70337 1.16219 0.84270 0.81766 0.77993 1.90855 1.27806 1.69914 1.62382 1.45206 1.16338 1.08829 1.67301 1.19187 0.87575 0.94222 0.82954 0.93688 1.21203 1.10198 0.88795 1.39547 0.89057 1.26002 0.94484 1.04981 0.93544 1.70536 1.10347 1.36692 1.33304 0.85148 0.77680 0.77233 0.79191 1.19839 1.20838 1.18044 1.23336 0.73525 0.71609 0.95830 1.93052 1.95864 1.35661 1.95667 1.93376 1.53559 1.77931 1.88273 1.92978 1.49476 1.88398 1.87585 1.21844 0.84360 0.96957 0.98281 1.21617 1.02200 0.94700 0.95949 1.22357 0.94372 0.95586 0.91976 0.92361 0.90828 0.90605 0.94794 0.92192 0.89808 0.89922 0.90319 0.90924 0.89940 0.75352 0.92155 0.89805 0.89898 0.88296 0.91894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.18 9.41 127.69 1.20 1.38 16 2 N -0.53 -8.95 5.48 -885.25 -4.85 -13.80 16 3 C 0.04 0.54 6.74 86.55 0.58 1.13 16 4 C -0.12 -1.91 6.60 31.27 0.21 -1.70 16 5 C -0.10 -2.20 2.75 -10.39 -0.03 -2.23 16 6 H 0.07 1.77 8.05 -2.39 -0.02 1.75 16 7 C 0.14 3.75 5.95 85.70 0.51 4.26 16 8 N -0.63 -19.20 3.01 -837.04 -2.52 -21.72 16 9 C 0.70 29.14 7.71 179.05 1.38 30.52 16 10 O -0.63 -31.94 14.53 -3.99 -0.06 -32.00 16 11 N -0.72 -30.44 4.87 -461.40 -2.25 -32.69 16 12 C 0.27 13.84 2.23 44.25 0.10 13.94 16 13 H 0.05 2.70 7.51 -2.39 -0.02 2.68 16 14 C -0.56 -28.63 8.47 25.60 0.22 -28.42 16 15 H 0.09 4.28 7.74 -2.91 -0.02 4.26 16 16 C 0.02 0.79 5.20 84.66 0.44 1.23 16 17 N -0.87 -48.97 9.50 21.45 0.20 -48.77 16 18 Si 0.98 40.63 29.54 68.60 2.03 42.66 16 19 H -0.27 -11.05 7.11 99.48 0.71 -10.35 16 20 H -0.28 -11.61 7.11 99.48 0.71 -10.90 16 21 H -0.26 -9.95 7.11 99.48 0.71 -9.24 16 22 C 0.41 21.86 2.81 71.98 0.20 22.06 16 23 F -0.22 -11.68 15.89 44.97 0.71 -10.97 16 24 F -0.15 -8.60 12.91 44.97 0.58 -8.02 16 25 F -0.20 -10.02 16.94 44.97 0.76 -9.26 16 26 C 0.11 2.41 6.26 86.68 0.54 2.95 16 27 C -0.11 -1.96 5.99 30.48 0.18 -1.78 16 28 C 0.07 1.19 1.63 45.35 0.07 1.27 16 29 H 0.06 0.99 7.92 -2.39 -0.02 0.97 16 30 H 0.07 0.86 7.82 -2.38 -0.02 0.85 16 31 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.03 0.39 7.95 -2.38 -0.02 0.37 16 33 H 0.06 0.71 7.69 -2.38 -0.02 0.70 16 34 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.08 1.15 8.03 -2.39 -0.02 1.13 16 36 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 37 H 0.07 2.31 6.98 -2.38 -0.02 2.30 16 38 H 0.08 1.84 8.12 -2.38 -0.02 1.82 16 39 H 0.41 14.52 5.99 -92.71 -0.56 13.96 16 40 H 0.27 14.23 8.31 -92.71 -0.77 13.46 16 41 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 42 H 0.08 1.86 5.64 -2.39 -0.01 1.85 16 43 H 0.10 1.38 7.84 -2.39 -0.02 1.36 16 44 H 0.06 1.39 8.06 -2.39 -0.02 1.37 16 Total: -1.00 -67.62 351.93 0.70 -66.92 By element: Atomic # 1 Polarization: 22.54 SS G_CDS: 0.48 Total: 23.02 kcal Atomic # 6 Polarization: 39.00 SS G_CDS: 5.61 Total: 44.61 kcal Atomic # 7 Polarization: -107.56 SS G_CDS: -9.41 Total: -116.97 kcal Atomic # 8 Polarization: -31.94 SS G_CDS: -0.06 Total: -32.00 kcal Atomic # 9 Polarization: -30.30 SS G_CDS: 2.06 Total: -28.25 kcal Atomic # 14 Polarization: 40.63 SS G_CDS: 2.03 Total: 42.66 kcal Total: -67.62 0.70 -66.92 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932893750.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.627 kcal (2) G-P(sol) polarization free energy of solvation -67.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds