Wall clock time and date at job start Tue Mar 31 2020 18:18:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.47821 * 111.00111 * 2 1 4 4 C 1.54798 * 107.03158 * 234.98991 * 3 2 1 5 5 C 1.54465 * 101.92811 * 337.18255 * 4 3 2 6 6 H 1.08994 * 109.49390 * 284.21667 * 5 4 3 7 7 C 1.49900 * 112.95305 * 161.87329 * 5 4 3 8 8 N 1.43985 * 116.18515 * 263.92151 * 7 5 4 9 9 C 1.34777 * 116.39957 * 182.74442 * 8 7 5 10 10 O 1.21588 * 120.00089 * 0.02562 * 9 8 7 11 11 N 1.34778 * 120.00126 * 180.02562 * 9 8 7 12 12 C 1.46498 * 120.00203 * 179.97438 * 11 9 8 13 13 H 1.08995 * 109.46965 * 325.00916 * 12 11 9 14 14 C 1.50700 * 109.47451 * 205.00514 * 12 11 9 15 15 H 1.08003 * 119.99650 * 0.02562 * 14 12 11 16 16 C 1.37870 * 120.00054 * 180.02562 * 14 12 11 17 17 N 1.31517 * 120.00107 * 359.97438 * 16 14 12 18 18 Si 1.86803 * 120.00033 * 180.02562 * 16 14 12 19 19 H 1.48497 * 109.47177 * 59.99654 * 18 16 14 20 20 H 1.48495 * 109.47236 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.46760 * 299.99736 * 18 16 14 22 22 C 1.52998 * 109.46769 * 85.00592 * 12 11 9 23 23 F 1.39901 * 109.47275 * 59.99727 * 22 12 11 24 24 F 1.39901 * 109.47129 * 180.02562 * 22 12 11 25 25 F 1.39902 * 109.47307 * 299.99891 * 22 12 11 26 26 C 1.44340 * 127.20250 * 2.77094 * 8 7 5 27 27 C 1.51584 * 112.96077 * 7.64212 * 26 8 7 28 28 C 1.49045 * 111.00149 * 239.98594 * 2 1 3 29 29 H 1.09003 * 112.31339 * 270.94922 * 28 2 1 30 30 H 1.09001 * 109.46631 * 59.87799 * 1 2 3 31 31 H 1.09003 * 109.47211 * 179.87329 * 1 2 3 32 32 H 1.09000 * 109.46877 * 299.87807 * 1 2 3 33 33 H 1.09000 * 109.91783 * 115.64886 * 3 2 1 34 34 H 1.08990 * 110.09203 * 354.42970 * 3 2 1 35 35 H 1.09002 * 110.94401 * 219.02319 * 4 3 2 36 36 H 1.09007 * 110.94010 * 95.34240 * 4 3 2 37 37 H 1.08996 * 108.14139 * 142.17302 * 7 5 4 38 38 H 1.09010 * 108.13629 * 25.66236 * 7 5 4 39 39 H 0.97000 * 119.99925 * 0.02562 * 11 9 8 40 40 H 0.96998 * 120.00043 * 179.97438 * 17 16 14 41 41 H 1.09002 * 108.76866 * 128.50768 * 26 8 7 42 42 H 1.09004 * 108.76780 * 246.78284 * 26 8 7 43 43 H 1.09001 * 109.06175 * 80.96535 * 27 26 8 44 44 H 1.09005 * 109.05710 * 199.87965 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9988 1.3800 0.0000 4 6 2.9540 1.4990 -1.2123 5 6 3.3404 0.0241 -1.4602 6 1 4.0593 -0.2953 -0.7058 7 6 3.9110 -0.2089 -2.8266 8 7 2.9884 -0.6734 -3.8298 9 6 3.5079 -0.9390 -5.0447 10 8 4.6970 -0.7831 -5.2448 11 7 2.7093 -1.3775 -6.0379 12 6 3.2738 -1.6657 -7.3587 13 1 4.0762 -0.9598 -7.5727 14 6 2.1971 -1.5346 -8.4048 15 1 1.1927 -1.2633 -8.1148 16 6 2.4941 -1.7610 -9.7319 17 7 3.7173 -2.0909 -10.0850 18 14 1.1595 -1.5979 -11.0288 19 1 0.6203 -0.2143 -11.0128 20 1 1.7315 -1.8913 -12.3674 21 1 0.0656 -2.5589 -10.7369 22 6 3.8304 -3.0908 -7.3754 23 9 2.8005 -3.9969 -7.1005 24 9 4.3700 -3.3659 -8.6365 25 9 4.8300 -3.2125 -6.4043 26 6 1.5688 -0.8855 -3.6785 27 6 1.0354 -0.3912 -2.3485 28 6 2.0032 -0.6960 -1.2049 29 1 2.1359 -1.7653 -1.0402 30 1 -0.3632 0.5157 -0.8889 31 1 -0.3634 -1.0277 -0.0023 32 1 -0.3633 0.5119 0.8911 33 1 2.5460 1.5677 0.9238 34 1 1.1819 2.0947 -0.0994 35 1 3.8315 2.0944 -0.9599 36 1 2.4370 1.9168 -2.0762 37 1 4.7137 -0.9410 -2.7389 38 1 4.3490 0.7264 -3.1755 39 1 1.7606 -1.5016 -5.8784 40 1 3.9261 -2.2506 -11.0187 41 1 1.0485 -0.3628 -4.4811 42 1 1.3625 -1.9524 -3.7643 43 1 0.8786 0.6859 -2.4060 44 1 0.0817 -0.8780 -2.1444 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932893751.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:18:48 Heat of formation + Delta-G solvation = -137.951656 kcal Electronic energy + Delta-G solvation = -31389.726445 eV Core-core repulsion = 26735.433938 eV Total energy + Delta-G solvation = -4654.292507 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.156 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -48.29619 -45.94780 -45.56724 -41.03587 -39.24944 -35.80860 -34.73437 -33.38481 -32.42546 -31.22534 -29.53939 -28.06435 -26.39108 -24.56751 -24.01075 -23.52074 -21.59188 -20.95693 -19.99174 -18.52743 -18.41202 -16.86437 -16.82063 -16.60159 -16.14234 -16.10968 -15.74730 -15.43928 -15.27653 -14.81229 -14.41746 -14.09774 -13.81732 -13.56402 -13.29636 -13.10532 -12.98333 -12.80492 -12.64869 -12.37712 -12.34243 -12.21487 -12.01654 -11.93207 -11.86700 -11.76081 -11.52852 -11.34268 -11.16173 -10.99158 -10.86606 -10.81642 -10.67728 -10.62037 -10.38339 -9.65778 -9.48694 -8.71240 -8.58724 -8.40377 -8.05465 -6.22316 -4.46424 3.06971 3.19748 3.24942 3.26882 3.63794 3.73288 4.17812 4.28975 4.31414 4.46304 4.60964 4.67008 4.75389 4.80323 4.94856 4.98157 5.04919 5.10290 5.24703 5.25636 5.34650 5.46792 5.56270 5.58638 5.60931 5.70558 5.75818 5.77815 5.87441 5.92342 5.98169 6.05101 6.14937 6.25690 6.59157 6.75153 6.80964 7.03636 7.21668 7.33898 7.59480 7.65525 8.48951 8.60093 9.14068 9.24987 10.69232 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.019601 B = 0.003390 C = 0.003172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1428.183488 B = 8257.900164 C = 8823.752419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 N -0.531 5.531 3 C 0.039 3.961 4 C -0.136 4.136 5 C -0.097 4.097 6 H 0.093 0.907 7 C 0.154 3.846 8 N -0.621 5.621 9 C 0.692 3.308 10 O -0.580 6.580 11 N -0.725 5.725 12 C 0.261 3.739 13 H 0.085 0.915 14 C -0.552 4.552 15 H 0.075 0.925 16 C 0.066 3.934 17 N -0.839 5.839 18 Si 0.915 3.085 19 H -0.273 1.273 20 H -0.283 1.283 21 H -0.273 1.273 22 C 0.416 3.584 23 F -0.210 7.210 24 F -0.138 7.138 25 F -0.216 7.216 26 C 0.117 3.883 27 C -0.150 4.150 28 C 0.080 3.920 29 H 0.103 0.897 30 H 0.036 0.964 31 H 0.069 0.931 32 H 0.064 0.936 33 H 0.078 0.922 34 H 0.053 0.947 35 H 0.078 0.922 36 H 0.071 0.929 37 H 0.064 0.936 38 H 0.061 0.939 39 H 0.394 0.606 40 H 0.269 0.731 41 H 0.067 0.933 42 H 0.060 0.940 43 H 0.069 0.931 44 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.495 4.896 16.728 18.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 N -0.255 5.255 3 C -0.089 4.089 4 C -0.175 4.175 5 C -0.116 4.116 6 H 0.111 0.889 7 C 0.030 3.970 8 N -0.361 5.361 9 C 0.393 3.607 10 O -0.457 6.457 11 N -0.378 5.378 12 C 0.155 3.845 13 H 0.102 0.898 14 C -0.589 4.589 15 H 0.093 0.907 16 C -0.143 4.143 17 N -0.472 5.472 18 Si 0.741 3.259 19 H -0.198 1.198 20 H -0.209 1.209 21 H -0.198 1.198 22 C 0.360 3.640 23 F -0.192 7.192 24 F -0.119 7.119 25 F -0.198 7.198 26 C -0.007 4.007 27 C -0.189 4.189 28 C -0.028 4.028 29 H 0.121 0.879 30 H 0.054 0.946 31 H 0.087 0.913 32 H 0.083 0.917 33 H 0.096 0.904 34 H 0.072 0.928 35 H 0.097 0.903 36 H 0.090 0.910 37 H 0.083 0.917 38 H 0.080 0.920 39 H 0.229 0.771 40 H 0.079 0.921 41 H 0.085 0.915 42 H 0.078 0.922 43 H 0.088 0.912 44 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -5.324 4.696 16.925 18.354 hybrid contribution -1.407 0.078 -1.315 1.928 sum -6.732 4.773 15.610 17.657 Atomic orbital electron populations 1.22619 0.87973 1.02207 1.00759 1.64231 1.08015 1.14202 1.39014 1.22963 0.97778 0.89423 0.98688 1.22896 0.99887 0.96482 0.98197 1.21573 0.97581 0.95586 0.96895 0.88900 1.19669 0.90875 1.00346 0.86110 1.45798 1.07441 1.71934 1.10878 1.16109 0.85489 0.78784 0.80304 1.90912 1.13855 1.59223 1.81680 1.45441 1.11065 1.69965 1.11374 1.19597 0.97723 0.87727 0.79495 0.89753 1.20819 0.95565 1.52237 0.90302 0.90658 1.25068 0.96436 0.93941 0.98891 1.70397 1.18331 1.40571 1.17931 0.86281 0.81001 0.78803 0.79791 1.19831 1.20863 1.19849 1.23162 0.74940 0.92154 0.73787 1.92980 1.60620 1.71704 1.93939 1.93400 1.86283 1.94597 1.37599 1.93073 1.64161 1.97019 1.65571 1.20622 0.81526 1.00788 0.97779 1.22135 1.00030 1.02098 0.94657 1.22623 0.93293 0.99353 0.87512 0.87893 0.94556 0.91260 0.91681 0.90372 0.92842 0.90292 0.91028 0.91720 0.92041 0.77071 0.92066 0.91474 0.92169 0.91216 0.89937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.10 8.07 60.07 0.48 0.58 16 2 N -0.53 -4.85 5.46 -230.61 -1.26 -6.11 16 3 C 0.04 0.32 6.62 -2.37 -0.02 0.31 16 4 C -0.14 -1.21 5.69 -25.02 -0.14 -1.36 16 5 C -0.10 -1.00 2.88 -90.86 -0.26 -1.26 16 6 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 7 C 0.15 2.12 5.11 -6.92 -0.04 2.08 16 8 N -0.62 -9.62 3.20 -185.84 -0.59 -10.22 16 9 C 0.69 14.19 7.65 -86.92 -0.66 13.52 16 10 O -0.58 -14.13 14.55 5.29 0.08 -14.06 16 11 N -0.72 -15.14 4.80 -59.82 -0.29 -15.43 16 12 C 0.26 6.56 2.21 -69.08 -0.15 6.41 16 13 H 0.08 2.38 7.58 -51.93 -0.39 1.99 16 14 C -0.55 -14.08 8.46 -34.44 -0.29 -14.37 16 15 H 0.08 1.80 7.74 -52.48 -0.41 1.40 16 16 C 0.07 1.70 5.20 -17.82 -0.09 1.61 16 17 N -0.84 -23.06 9.50 55.43 0.53 -22.53 16 18 Si 0.91 20.00 29.54 -169.99 -5.02 14.98 16 19 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 20 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 21 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 22 C 0.42 10.83 2.81 37.16 0.10 10.93 16 23 F -0.21 -5.25 16.94 2.25 0.04 -5.22 16 24 F -0.14 -3.85 12.91 2.25 0.03 -3.82 16 25 F -0.22 -5.64 15.67 2.25 0.04 -5.60 16 26 C 0.12 1.43 5.01 -5.91 -0.03 1.40 16 27 C -0.15 -1.43 3.69 -27.51 -0.10 -1.53 16 28 C 0.08 0.79 3.76 -66.05 -0.25 0.54 16 29 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 30 H 0.04 0.26 5.99 -51.93 -0.31 -0.05 16 31 H 0.07 0.50 8.01 -51.93 -0.42 0.08 16 32 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.05 0.40 7.60 -51.93 -0.39 0.01 16 35 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.07 0.70 7.15 -51.92 -0.37 0.33 16 37 H 0.06 0.98 7.97 -51.93 -0.41 0.56 16 38 H 0.06 0.89 7.79 -51.92 -0.40 0.49 16 39 H 0.39 7.16 6.38 -40.82 -0.26 6.90 16 40 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 41 H 0.07 0.81 7.27 -51.93 -0.38 0.43 16 42 H 0.06 0.73 8.04 -51.93 -0.42 0.31 16 43 H 0.07 0.67 5.84 -51.93 -0.30 0.37 16 44 H 0.08 0.67 6.69 -51.93 -0.35 0.32 16 LS Contribution 344.13 15.07 5.19 5.19 Total: -1.00 -30.53 344.13 -8.78 -39.31 By element: Atomic # 1 Polarization: 10.70 SS G_CDS: -6.07 Total: 4.63 kcal Atomic # 6 Polarization: 20.32 SS G_CDS: -1.45 Total: 18.87 kcal Atomic # 7 Polarization: -52.67 SS G_CDS: -1.61 Total: -54.29 kcal Atomic # 8 Polarization: -14.13 SS G_CDS: 0.08 Total: -14.06 kcal Atomic # 9 Polarization: -14.74 SS G_CDS: 0.10 Total: -14.64 kcal Atomic # 14 Polarization: 20.00 SS G_CDS: -5.02 Total: 14.98 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -30.53 -8.78 -39.31 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932893751.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.640 kcal (2) G-P(sol) polarization free energy of solvation -30.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.312 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds