Wall clock time and date at job start Tue Mar 31 2020 18:18:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.47821 * 111.00111 * 2 1 4 4 C 1.54798 * 107.03158 * 234.98991 * 3 2 1 5 5 C 1.54465 * 101.92811 * 337.18255 * 4 3 2 6 6 H 1.08994 * 109.49390 * 284.21667 * 5 4 3 7 7 C 1.49900 * 112.95305 * 161.87329 * 5 4 3 8 8 N 1.43985 * 116.18515 * 263.92151 * 7 5 4 9 9 C 1.34777 * 116.39957 * 182.74442 * 8 7 5 10 10 O 1.21588 * 120.00089 * 0.02562 * 9 8 7 11 11 N 1.34778 * 120.00126 * 180.02562 * 9 8 7 12 12 C 1.46498 * 120.00203 * 179.97438 * 11 9 8 13 13 H 1.08995 * 109.46965 * 325.00916 * 12 11 9 14 14 C 1.50700 * 109.47451 * 205.00514 * 12 11 9 15 15 H 1.08003 * 119.99650 * 0.02562 * 14 12 11 16 16 C 1.37870 * 120.00054 * 180.02562 * 14 12 11 17 17 N 1.31517 * 120.00107 * 359.97438 * 16 14 12 18 18 Si 1.86803 * 120.00033 * 180.02562 * 16 14 12 19 19 H 1.48497 * 109.47177 * 59.99654 * 18 16 14 20 20 H 1.48495 * 109.47236 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.46760 * 299.99736 * 18 16 14 22 22 C 1.52998 * 109.46769 * 85.00592 * 12 11 9 23 23 F 1.39901 * 109.47275 * 59.99727 * 22 12 11 24 24 F 1.39901 * 109.47129 * 180.02562 * 22 12 11 25 25 F 1.39902 * 109.47307 * 299.99891 * 22 12 11 26 26 C 1.44340 * 127.20250 * 2.77094 * 8 7 5 27 27 C 1.51584 * 112.96077 * 7.64212 * 26 8 7 28 28 C 1.49045 * 111.00149 * 239.98594 * 2 1 3 29 29 H 1.09003 * 112.31339 * 270.94922 * 28 2 1 30 30 H 1.09001 * 109.46631 * 59.87799 * 1 2 3 31 31 H 1.09003 * 109.47211 * 179.87329 * 1 2 3 32 32 H 1.09000 * 109.46877 * 299.87807 * 1 2 3 33 33 H 1.09000 * 109.91783 * 115.64886 * 3 2 1 34 34 H 1.08990 * 110.09203 * 354.42970 * 3 2 1 35 35 H 1.09002 * 110.94401 * 219.02319 * 4 3 2 36 36 H 1.09007 * 110.94010 * 95.34240 * 4 3 2 37 37 H 1.08996 * 108.14139 * 142.17302 * 7 5 4 38 38 H 1.09010 * 108.13629 * 25.66236 * 7 5 4 39 39 H 0.97000 * 119.99925 * 0.02562 * 11 9 8 40 40 H 0.96998 * 120.00043 * 179.97438 * 17 16 14 41 41 H 1.09002 * 108.76866 * 128.50768 * 26 8 7 42 42 H 1.09004 * 108.76780 * 246.78284 * 26 8 7 43 43 H 1.09001 * 109.06175 * 80.96535 * 27 26 8 44 44 H 1.09005 * 109.05710 * 199.87965 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9988 1.3800 0.0000 4 6 2.9540 1.4990 -1.2123 5 6 3.3404 0.0241 -1.4602 6 1 4.0593 -0.2953 -0.7058 7 6 3.9110 -0.2089 -2.8266 8 7 2.9884 -0.6734 -3.8298 9 6 3.5079 -0.9390 -5.0447 10 8 4.6970 -0.7831 -5.2448 11 7 2.7093 -1.3775 -6.0379 12 6 3.2738 -1.6657 -7.3587 13 1 4.0762 -0.9598 -7.5727 14 6 2.1971 -1.5346 -8.4048 15 1 1.1927 -1.2633 -8.1148 16 6 2.4941 -1.7610 -9.7319 17 7 3.7173 -2.0909 -10.0850 18 14 1.1595 -1.5979 -11.0288 19 1 0.6203 -0.2143 -11.0128 20 1 1.7315 -1.8913 -12.3674 21 1 0.0656 -2.5589 -10.7369 22 6 3.8304 -3.0908 -7.3754 23 9 2.8005 -3.9969 -7.1005 24 9 4.3700 -3.3659 -8.6365 25 9 4.8300 -3.2125 -6.4043 26 6 1.5688 -0.8855 -3.6785 27 6 1.0354 -0.3912 -2.3485 28 6 2.0032 -0.6960 -1.2049 29 1 2.1359 -1.7653 -1.0402 30 1 -0.3632 0.5157 -0.8889 31 1 -0.3634 -1.0277 -0.0023 32 1 -0.3633 0.5119 0.8911 33 1 2.5460 1.5677 0.9238 34 1 1.1819 2.0947 -0.0994 35 1 3.8315 2.0944 -0.9599 36 1 2.4370 1.9168 -2.0762 37 1 4.7137 -0.9410 -2.7389 38 1 4.3490 0.7264 -3.1755 39 1 1.7606 -1.5016 -5.8784 40 1 3.9261 -2.2506 -11.0187 41 1 1.0485 -0.3628 -4.4811 42 1 1.3625 -1.9524 -3.7643 43 1 0.8786 0.6859 -2.4060 44 1 0.0817 -0.8780 -2.1444 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932893751.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:18:48 Heat of formation + Delta-G solvation = -158.816280 kcal Electronic energy + Delta-G solvation = -31390.631203 eV Core-core repulsion = 26735.433938 eV Total energy + Delta-G solvation = -4655.197265 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.156 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -50.40377 -48.03769 -47.71565 -42.12084 -40.53181 -37.12127 -36.51297 -34.69123 -33.88877 -32.25673 -30.66153 -29.62006 -27.19124 -26.57790 -25.08534 -24.48194 -23.38325 -21.70559 -21.54203 -20.09099 -19.35066 -18.86888 -18.78175 -18.60169 -17.74342 -17.21516 -17.08628 -16.64960 -16.51081 -16.39011 -15.53891 -15.17213 -15.07337 -14.95670 -14.88471 -14.56160 -14.45022 -14.44751 -14.27813 -14.09677 -14.01981 -13.87997 -13.78923 -13.36561 -13.05163 -12.80607 -12.78883 -12.66287 -12.59548 -12.28601 -12.20410 -12.08537 -11.81593 -11.59509 -11.55362 -11.43133 -11.19990 -10.67095 -10.16028 -9.48454 -9.23060 -8.20159 -6.51624 1.46874 1.50025 1.57485 1.66022 2.06452 2.37101 2.55569 2.92602 2.94761 2.98615 3.48831 3.56661 3.78540 3.82110 3.88243 3.88796 3.92353 4.15897 4.20340 4.29346 4.37939 4.49683 4.51462 4.60744 4.64902 4.73600 4.77136 4.83072 4.86038 4.87940 4.97730 5.06826 5.11283 5.27636 5.30660 5.41658 5.49980 5.65271 5.77553 5.89015 5.96544 6.12037 6.52817 7.01070 7.18891 7.57816 8.72526 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.019601 B = 0.003390 C = 0.003172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1428.183488 B = 8257.900164 C = 8823.752419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 N -0.539 5.539 3 C 0.043 3.957 4 C -0.131 4.131 5 C -0.093 4.093 6 H 0.099 0.901 7 C 0.156 3.844 8 N -0.607 5.607 9 C 0.686 3.314 10 O -0.625 6.625 11 N -0.717 5.717 12 C 0.269 3.731 13 H 0.045 0.955 14 C -0.561 4.561 15 H 0.092 0.908 16 C 0.016 3.984 17 N -0.875 5.875 18 Si 0.984 3.016 19 H -0.262 1.262 20 H -0.285 1.285 21 H -0.265 1.265 22 C 0.413 3.587 23 F -0.203 7.203 24 F -0.150 7.150 25 F -0.219 7.219 26 C 0.108 3.892 27 C -0.140 4.140 28 C 0.081 3.919 29 H 0.098 0.902 30 H 0.041 0.959 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.084 0.916 34 H 0.064 0.936 35 H 0.087 0.913 36 H 0.064 0.936 37 H 0.045 0.955 38 H 0.050 0.950 39 H 0.409 0.591 40 H 0.269 0.731 41 H 0.072 0.928 42 H 0.065 0.935 43 H 0.073 0.927 44 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.178 5.499 17.964 20.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 N -0.262 5.262 3 C -0.085 4.085 4 C -0.170 4.170 5 C -0.113 4.113 6 H 0.118 0.882 7 C 0.032 3.968 8 N -0.345 5.345 9 C 0.387 3.613 10 O -0.506 6.506 11 N -0.373 5.373 12 C 0.161 3.839 13 H 0.063 0.937 14 C -0.598 4.598 15 H 0.110 0.890 16 C -0.190 4.190 17 N -0.509 5.509 18 Si 0.807 3.193 19 H -0.187 1.187 20 H -0.210 1.210 21 H -0.189 1.189 22 C 0.356 3.644 23 F -0.185 7.185 24 F -0.132 7.132 25 F -0.201 7.201 26 C -0.015 4.015 27 C -0.178 4.178 28 C -0.028 4.028 29 H 0.116 0.884 30 H 0.060 0.940 31 H 0.091 0.909 32 H 0.092 0.908 33 H 0.103 0.897 34 H 0.082 0.918 35 H 0.106 0.894 36 H 0.082 0.918 37 H 0.064 0.936 38 H 0.068 0.932 39 H 0.247 0.753 40 H 0.079 0.921 41 H 0.091 0.909 42 H 0.083 0.917 43 H 0.092 0.908 44 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -8.064 5.310 18.228 20.628 hybrid contribution -0.533 -0.116 -1.626 1.715 sum -8.598 5.194 16.603 19.405 Atomic orbital electron populations 1.22683 0.86850 1.02735 1.01465 1.64241 1.09133 1.14626 1.38241 1.22979 0.97905 0.89237 0.98385 1.22859 1.00454 0.95258 0.98383 1.21502 0.98224 0.97101 0.94424 0.88232 1.19736 0.90532 0.99006 0.87480 1.45845 1.09083 1.70328 1.09208 1.16355 0.84874 0.78614 0.81492 1.90876 1.15913 1.61036 1.82731 1.45170 1.11752 1.70139 1.10210 1.19190 0.96848 0.86234 0.81599 0.93700 1.21164 0.96135 1.51982 0.90529 0.89004 1.26004 0.98546 0.93323 1.01110 1.70534 1.20429 1.41605 1.18304 0.85200 0.78114 0.79305 0.76637 1.18667 1.21044 1.18941 1.23344 0.74971 0.92824 0.73244 1.92979 1.60180 1.71493 1.93846 1.93374 1.86537 1.94741 1.38520 1.93063 1.64414 1.97071 1.65598 1.20904 0.79301 1.01420 0.99874 1.22102 1.00631 1.02419 0.92675 1.22568 0.92890 0.99150 0.88145 0.88386 0.94031 0.90862 0.90793 0.89732 0.91782 0.89416 0.91767 0.93646 0.93175 0.75347 0.92142 0.90949 0.91676 0.90841 0.87736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.13 8.07 127.69 1.03 1.16 16 2 N -0.54 -8.35 5.46 -883.52 -4.83 -13.18 16 3 C 0.04 0.58 6.62 86.74 0.57 1.16 16 4 C -0.13 -2.09 5.69 31.71 0.18 -1.91 16 5 C -0.09 -1.81 2.88 -10.95 -0.03 -1.84 16 6 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 7 C 0.16 4.32 5.11 85.85 0.44 4.76 16 8 N -0.61 -18.68 3.20 -860.13 -2.75 -21.43 16 9 C 0.69 28.62 7.65 179.05 1.37 29.99 16 10 O -0.63 -31.72 14.55 -3.99 -0.06 -31.77 16 11 N -0.72 -30.10 4.80 -461.42 -2.21 -32.32 16 12 C 0.27 13.80 2.21 44.24 0.10 13.90 16 13 H 0.05 2.67 7.58 -2.39 -0.02 2.65 16 14 C -0.56 -28.42 8.46 25.60 0.22 -28.21 16 15 H 0.09 4.24 7.74 -2.91 -0.02 4.22 16 16 C 0.02 0.80 5.20 84.65 0.44 1.24 16 17 N -0.87 -48.78 9.50 21.45 0.20 -48.57 16 18 Si 0.98 40.26 29.54 68.60 2.03 42.29 16 19 H -0.26 -10.20 7.11 99.48 0.71 -9.49 16 20 H -0.28 -11.65 7.11 99.48 0.71 -10.94 16 21 H -0.26 -10.41 7.11 99.48 0.71 -9.71 16 22 C 0.41 21.88 2.81 71.98 0.20 22.08 16 23 F -0.20 -10.10 16.94 44.97 0.76 -9.34 16 24 F -0.15 -8.62 12.91 44.97 0.58 -8.04 16 25 F -0.22 -11.75 15.67 44.97 0.70 -11.04 16 26 C 0.11 2.45 5.01 86.32 0.43 2.89 16 27 C -0.14 -2.28 3.69 30.09 0.11 -2.17 16 28 C 0.08 1.42 3.76 44.80 0.17 1.58 16 29 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 30 H 0.04 0.46 5.99 -2.39 -0.01 0.44 16 31 H 0.07 0.82 8.01 -2.39 -0.02 0.80 16 32 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 34 H 0.06 0.76 7.60 -2.39 -0.02 0.74 16 35 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 36 H 0.06 1.13 7.15 -2.38 -0.02 1.12 16 37 H 0.05 1.42 7.97 -2.39 -0.02 1.41 16 38 H 0.05 1.50 7.79 -2.38 -0.02 1.48 16 39 H 0.41 14.46 6.38 -92.71 -0.59 13.87 16 40 H 0.27 14.22 8.31 -92.71 -0.77 13.45 16 41 H 0.07 1.60 7.27 -2.39 -0.02 1.59 16 42 H 0.07 1.45 8.04 -2.39 -0.02 1.43 16 43 H 0.07 1.19 5.84 -2.39 -0.01 1.18 16 44 H 0.10 1.32 6.69 -2.38 -0.02 1.30 16 Total: -1.00 -66.69 344.13 0.11 -66.58 By element: Atomic # 1 Polarization: 21.75 SS G_CDS: 0.45 Total: 22.20 kcal Atomic # 6 Polarization: 39.39 SS G_CDS: 5.23 Total: 44.62 kcal Atomic # 7 Polarization: -105.91 SS G_CDS: -9.59 Total: -115.50 kcal Atomic # 8 Polarization: -31.72 SS G_CDS: -0.06 Total: -31.77 kcal Atomic # 9 Polarization: -30.47 SS G_CDS: 2.05 Total: -28.42 kcal Atomic # 14 Polarization: 40.26 SS G_CDS: 2.03 Total: 42.29 kcal Total: -66.69 0.11 -66.58 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932893751.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.234 kcal (2) G-P(sol) polarization free energy of solvation -66.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds