Wall clock time and date at job start Tue Mar 31 2020 18:23:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.47381 * 110.99869 * 2 1 4 4 C 1.54054 * 106.11319 * 219.21821 * 3 2 1 5 5 H 1.09000 * 110.29133 * 270.98895 * 4 3 2 6 6 C 1.52081 * 110.12334 * 149.56104 * 4 3 2 7 7 C 1.53315 * 109.16397 * 299.46433 * 6 4 3 8 8 C 1.53038 * 107.65663 * 291.56847 * 7 6 4 9 9 N 1.45109 * 110.42746 * 52.03720 * 8 7 6 10 10 C 1.34769 * 116.62091 * 153.03552 * 9 8 7 11 11 O 1.21589 * 120.00416 * 174.57048 * 10 9 8 12 12 N 1.34776 * 119.99901 * 354.57504 * 10 9 8 13 13 C 1.46511 * 119.99952 * 185.06995 * 12 10 9 14 14 H 1.08997 * 109.46774 * 34.99969 * 13 12 10 15 15 C 1.50697 * 109.47069 * 154.99792 * 13 12 10 16 16 H 1.08004 * 119.99914 * 0.02562 * 15 13 12 17 17 C 1.37872 * 119.99876 * 180.02562 * 15 13 12 18 18 N 1.31509 * 120.00401 * 0.02562 * 17 15 13 19 19 Si 1.86807 * 119.99803 * 179.97438 * 17 15 13 20 20 H 1.48497 * 109.47108 * 60.00271 * 19 17 15 21 21 H 1.48507 * 109.46899 * 179.97438 * 19 17 15 22 22 H 1.48493 * 109.47021 * 299.99899 * 19 17 15 23 23 C 1.52994 * 109.47185 * 274.99757 * 13 12 10 24 24 F 1.39902 * 109.47259 * 59.99602 * 23 13 12 25 25 F 1.39896 * 109.47383 * 179.97438 * 23 13 12 26 26 F 1.39901 * 109.47256 * 300.00155 * 23 13 12 27 27 C 1.44282 * 126.76246 * 333.04150 * 9 8 7 28 28 H 1.08997 * 108.86045 * 250.72910 * 27 9 8 29 29 C 1.47229 * 110.99744 * 238.48102 * 2 1 3 30 30 H 1.08996 * 109.47405 * 181.39769 * 1 2 3 31 31 H 1.09000 * 109.47257 * 61.39370 * 1 2 3 32 32 H 1.09004 * 109.47334 * 301.40040 * 1 2 3 33 33 H 1.09007 * 110.12873 * 338.38128 * 3 2 1 34 34 H 1.09005 * 110.12854 * 100.05468 * 3 2 1 35 35 H 1.08997 * 109.52397 * 59.37186 * 6 4 3 36 36 H 1.09003 * 109.51981 * 179.49702 * 6 4 3 37 37 H 1.09000 * 109.81737 * 51.10320 * 7 6 4 38 38 H 1.08997 * 109.82345 * 171.96400 * 7 6 4 39 39 H 1.09004 * 109.30866 * 172.32573 * 8 7 6 40 40 H 1.08999 * 109.31086 * 291.93548 * 8 7 6 41 41 H 0.96999 * 120.00452 * 5.06931 * 12 10 9 42 42 H 0.96996 * 120.00444 * 179.97438 * 18 17 15 43 43 H 1.09006 * 109.84087 * 242.34439 * 29 2 1 44 44 H 1.09002 * 109.84828 * 3.25857 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9972 1.3759 0.0000 4 6 3.2209 1.3642 -0.9358 5 1 4.1220 1.1125 -0.3765 6 6 3.3861 2.7232 -1.5980 7 6 2.1332 3.0361 -2.4243 8 6 2.1038 2.0667 -3.6082 9 7 2.2446 0.6984 -3.1459 10 6 1.6995 -0.2599 -3.9209 11 8 1.8656 -1.4324 -3.6451 12 7 0.9704 0.0813 -5.0018 13 6 0.2859 -0.9540 -5.7804 14 1 -0.0623 -1.7409 -5.1113 15 6 -0.8921 -0.3467 -6.4976 16 1 -1.1089 0.7053 -6.3852 17 6 -1.6929 -1.1341 -7.2973 18 7 -1.4292 -2.4152 -7.4338 19 14 -3.1536 -0.3814 -8.1859 20 1 -2.6796 0.6906 -9.0976 21 1 -3.8474 -1.4308 -8.9751 22 1 -4.0946 0.1943 -7.1918 23 6 1.2559 -1.5472 -6.8041 24 9 2.3495 -2.1109 -6.1383 25 9 0.6025 -2.5362 -7.5471 26 9 1.7029 -0.5372 -7.6628 27 6 2.9075 0.2574 -1.9426 28 1 3.8311 -0.2528 -2.2159 29 6 1.9966 -0.7186 -1.1717 30 1 -0.3634 -1.0273 0.0251 31 1 -0.3634 0.4920 -0.9022 32 1 -0.3634 0.5354 0.8772 33 1 1.2433 2.0671 -0.3771 34 1 2.2984 1.6621 1.0078 35 1 3.5180 3.4879 -0.8325 36 1 4.2592 2.7067 -2.2505 37 1 1.2424 2.8983 -1.8115 38 1 2.1767 4.0630 -2.7873 39 1 1.1568 2.1727 -4.1374 40 1 2.9241 2.3012 -4.2866 41 1 0.8988 1.0123 -5.2644 42 1 -1.9928 -2.9693 -7.9961 43 1 2.5735 -1.5842 -0.8460 44 1 1.1736 -1.0413 -1.8094 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932898538.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:23:44 Heat of formation + Delta-G solvation = -137.734858 kcal Electronic energy + Delta-G solvation = -32167.962869 eV Core-core repulsion = 27513.679763 eV Total energy + Delta-G solvation = -4654.283106 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.156 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -48.29795 -45.94560 -45.57393 -41.08006 -38.53347 -36.11885 -34.79869 -33.32229 -32.58876 -31.39220 -28.67894 -27.43553 -26.65052 -24.59210 -24.30991 -22.94174 -21.91640 -20.96114 -19.94385 -18.56697 -18.33295 -16.87653 -16.78010 -16.61497 -16.09681 -15.99652 -15.54413 -15.33239 -14.84032 -14.79915 -14.31102 -14.24728 -13.78368 -13.34406 -13.27156 -13.08781 -12.85260 -12.65279 -12.53036 -12.42039 -12.34383 -12.25399 -11.96282 -11.80697 -11.76981 -11.63848 -11.48253 -11.17544 -11.06351 -10.88631 -10.85035 -10.78290 -10.62894 -10.59892 -10.38803 -9.68102 -9.41582 -8.73101 -8.44396 -8.33767 -7.95797 -6.24407 -4.48759 3.03142 3.18069 3.23489 3.25233 3.67565 4.08118 4.14821 4.26805 4.42728 4.55076 4.63026 4.69024 4.80678 4.91548 4.93122 5.18003 5.21182 5.35589 5.49273 5.50286 5.56625 5.60531 5.64371 5.67350 5.78652 5.86306 5.88103 5.91287 5.94570 5.96466 6.09664 6.18885 6.23971 6.28924 6.75353 6.96303 7.06842 7.14227 7.19482 7.31134 7.56925 7.63114 8.46421 8.56927 9.10949 9.22139 10.67115 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.015868 B = 0.004178 C = 0.004001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1764.181860 B = 6699.700472 C = 6996.022997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.538 5.538 3 C 0.044 3.956 4 C -0.100 4.100 5 H 0.092 0.908 6 C -0.110 4.110 7 C -0.134 4.134 8 C 0.111 3.889 9 N -0.621 5.621 10 C 0.691 3.309 11 O -0.575 6.575 12 N -0.726 5.726 13 C 0.263 3.737 14 H 0.083 0.917 15 C -0.553 4.553 16 H 0.075 0.925 17 C 0.066 3.934 18 N -0.839 5.839 19 Si 0.914 3.086 20 H -0.273 1.273 21 H -0.283 1.283 22 H -0.273 1.273 23 C 0.416 3.584 24 F -0.214 7.214 25 F -0.138 7.138 26 F -0.211 7.211 27 C 0.161 3.839 28 H 0.071 0.929 29 C 0.032 3.968 30 H 0.068 0.932 31 H 0.027 0.973 32 H 0.062 0.938 33 H 0.053 0.947 34 H 0.076 0.924 35 H 0.069 0.931 36 H 0.069 0.931 37 H 0.073 0.927 38 H 0.079 0.921 39 H 0.076 0.924 40 H 0.060 0.940 41 H 0.394 0.606 42 H 0.269 0.731 43 H 0.083 0.917 44 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.030 10.760 10.888 16.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.262 5.262 3 C -0.083 4.083 4 C -0.120 4.120 5 H 0.110 0.890 6 C -0.148 4.148 7 C -0.172 4.172 8 C -0.012 4.012 9 N -0.360 5.360 10 C 0.392 3.608 11 O -0.452 6.452 12 N -0.381 5.381 13 C 0.157 3.843 14 H 0.100 0.900 15 C -0.590 4.590 16 H 0.093 0.907 17 C -0.143 4.143 18 N -0.472 5.472 19 Si 0.741 3.259 20 H -0.198 1.198 21 H -0.208 1.208 22 H -0.198 1.198 23 C 0.360 3.640 24 F -0.196 7.196 25 F -0.120 7.120 26 F -0.193 7.193 27 C 0.056 3.944 28 H 0.089 0.911 29 C -0.096 4.096 30 H 0.087 0.913 31 H 0.046 0.954 32 H 0.081 0.919 33 H 0.071 0.929 34 H 0.094 0.906 35 H 0.088 0.912 36 H 0.088 0.912 37 H 0.091 0.909 38 H 0.098 0.902 39 H 0.094 0.906 40 H 0.078 0.922 41 H 0.230 0.770 42 H 0.080 0.920 43 H 0.101 0.899 44 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 6.250 9.429 11.449 16.095 hybrid contribution -0.806 1.091 -1.669 2.151 sum 5.444 10.520 9.780 15.360 Atomic orbital electron populations 1.22502 0.87671 1.02227 1.00099 1.63291 1.07987 1.13487 1.41396 1.23002 0.95706 0.90390 0.99233 1.21785 0.99464 0.94945 0.95774 0.88992 1.21301 0.98258 0.95899 0.99337 1.21960 0.99017 0.99067 0.97141 1.21241 1.01754 0.81686 0.96526 1.46245 1.60630 1.05667 1.23507 1.16141 0.79033 0.85050 0.80549 1.90913 1.64368 1.16503 1.73390 1.45567 1.52685 1.11313 1.28558 1.19576 0.87581 0.88959 0.88218 0.89986 1.20811 1.10324 0.96617 1.31270 0.90713 1.25063 0.98234 0.95024 0.95975 1.70389 1.35666 1.04900 1.36205 0.86287 0.81327 0.78857 0.79449 1.19843 1.20833 1.19837 1.23132 0.80248 0.76985 0.83673 1.93083 1.59126 1.86414 1.81003 1.93396 1.78302 1.62311 1.77946 1.92979 1.90629 1.62086 1.73609 1.20819 0.95669 0.94040 0.83904 0.91061 1.23399 1.00108 0.96455 0.89623 0.91320 0.95442 0.91886 0.92891 0.90585 0.91194 0.91195 0.90865 0.90245 0.90586 0.92197 0.77006 0.92046 0.89854 0.89486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 9.05 60.07 0.54 0.85 16 2 N -0.54 -7.15 5.41 -240.76 -1.30 -8.46 16 3 C 0.04 0.48 6.17 -3.01 -0.02 0.46 16 4 C -0.10 -1.05 3.22 -90.60 -0.29 -1.34 16 5 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 6 C -0.11 -0.94 5.44 -27.04 -0.15 -1.09 16 7 C -0.13 -1.23 6.04 -26.55 -0.16 -1.39 16 8 C 0.11 1.34 5.75 -4.77 -0.03 1.32 16 9 N -0.62 -9.55 3.06 -173.87 -0.53 -10.09 16 10 C 0.69 13.81 6.93 -86.93 -0.60 13.21 16 11 O -0.57 -13.42 12.27 5.29 0.06 -13.35 16 12 N -0.73 -14.96 4.78 -59.81 -0.29 -15.24 16 13 C 0.26 6.53 2.20 -69.08 -0.15 6.37 16 14 H 0.08 2.28 7.65 -51.93 -0.40 1.89 16 15 C -0.55 -13.99 8.46 -34.44 -0.29 -14.28 16 16 H 0.07 1.78 7.74 -52.48 -0.41 1.37 16 17 C 0.07 1.71 5.20 -17.82 -0.09 1.61 16 18 N -0.84 -22.92 9.51 55.43 0.53 -22.39 16 19 Si 0.91 19.92 29.54 -169.99 -5.02 14.90 16 20 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 21 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 22 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 23 C 0.42 10.78 2.81 37.15 0.10 10.89 16 24 F -0.21 -5.58 15.47 2.25 0.03 -5.54 16 25 F -0.14 -3.86 12.92 2.25 0.03 -3.83 16 26 F -0.21 -5.27 16.94 2.25 0.04 -5.23 16 27 C 0.16 2.28 3.07 -68.57 -0.21 2.07 16 28 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 29 C 0.03 0.50 5.70 -3.04 -0.02 0.48 16 30 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.03 0.38 8.12 -51.93 -0.42 -0.04 16 32 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 33 H 0.05 0.57 5.18 -51.92 -0.27 0.30 16 34 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 35 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 36 H 0.07 0.61 8.10 -51.93 -0.42 0.19 16 37 H 0.07 0.72 5.79 -51.93 -0.30 0.42 16 38 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 39 H 0.08 0.93 6.00 -51.93 -0.31 0.62 16 40 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.39 7.10 5.97 -40.82 -0.24 6.86 16 42 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 43 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 44 H 0.09 1.64 5.03 -51.93 -0.26 1.38 16 LS Contribution 342.44 15.07 5.16 5.16 Total: -1.00 -29.83 342.44 -8.62 -38.45 By element: Atomic # 1 Polarization: 12.44 SS G_CDS: -5.97 Total: 6.46 kcal Atomic # 6 Polarization: 20.52 SS G_CDS: -1.36 Total: 19.16 kcal Atomic # 7 Polarization: -54.58 SS G_CDS: -1.59 Total: -56.18 kcal Atomic # 8 Polarization: -13.42 SS G_CDS: 0.06 Total: -13.35 kcal Atomic # 9 Polarization: -14.71 SS G_CDS: 0.10 Total: -14.61 kcal Atomic # 14 Polarization: 19.92 SS G_CDS: -5.02 Total: 14.90 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -29.83 -8.62 -38.45 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932898538.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.282 kcal (2) G-P(sol) polarization free energy of solvation -29.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds