Wall clock time and date at job start Tue Mar 31 2020 18:23:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.47381 * 110.99869 * 2 1 4 4 C 1.54054 * 106.11319 * 219.21821 * 3 2 1 5 5 H 1.09000 * 110.29133 * 270.98895 * 4 3 2 6 6 C 1.52081 * 110.12334 * 149.56104 * 4 3 2 7 7 C 1.53315 * 109.16397 * 299.46433 * 6 4 3 8 8 C 1.53038 * 107.65663 * 291.56847 * 7 6 4 9 9 N 1.45109 * 110.42746 * 52.03720 * 8 7 6 10 10 C 1.34769 * 116.62091 * 153.03552 * 9 8 7 11 11 O 1.21589 * 120.00416 * 174.57048 * 10 9 8 12 12 N 1.34776 * 119.99901 * 354.57504 * 10 9 8 13 13 C 1.46511 * 119.99952 * 185.06995 * 12 10 9 14 14 H 1.08997 * 109.46774 * 34.99969 * 13 12 10 15 15 C 1.50697 * 109.47069 * 154.99792 * 13 12 10 16 16 H 1.08004 * 119.99914 * 0.02562 * 15 13 12 17 17 C 1.37872 * 119.99876 * 180.02562 * 15 13 12 18 18 N 1.31509 * 120.00401 * 0.02562 * 17 15 13 19 19 Si 1.86807 * 119.99803 * 179.97438 * 17 15 13 20 20 H 1.48497 * 109.47108 * 60.00271 * 19 17 15 21 21 H 1.48507 * 109.46899 * 179.97438 * 19 17 15 22 22 H 1.48493 * 109.47021 * 299.99899 * 19 17 15 23 23 C 1.52994 * 109.47185 * 274.99757 * 13 12 10 24 24 F 1.39902 * 109.47259 * 59.99602 * 23 13 12 25 25 F 1.39896 * 109.47383 * 179.97438 * 23 13 12 26 26 F 1.39901 * 109.47256 * 300.00155 * 23 13 12 27 27 C 1.44282 * 126.76246 * 333.04150 * 9 8 7 28 28 H 1.08997 * 108.86045 * 250.72910 * 27 9 8 29 29 C 1.47229 * 110.99744 * 238.48102 * 2 1 3 30 30 H 1.08996 * 109.47405 * 181.39769 * 1 2 3 31 31 H 1.09000 * 109.47257 * 61.39370 * 1 2 3 32 32 H 1.09004 * 109.47334 * 301.40040 * 1 2 3 33 33 H 1.09007 * 110.12873 * 338.38128 * 3 2 1 34 34 H 1.09005 * 110.12854 * 100.05468 * 3 2 1 35 35 H 1.08997 * 109.52397 * 59.37186 * 6 4 3 36 36 H 1.09003 * 109.51981 * 179.49702 * 6 4 3 37 37 H 1.09000 * 109.81737 * 51.10320 * 7 6 4 38 38 H 1.08997 * 109.82345 * 171.96400 * 7 6 4 39 39 H 1.09004 * 109.30866 * 172.32573 * 8 7 6 40 40 H 1.08999 * 109.31086 * 291.93548 * 8 7 6 41 41 H 0.96999 * 120.00452 * 5.06931 * 12 10 9 42 42 H 0.96996 * 120.00444 * 179.97438 * 18 17 15 43 43 H 1.09006 * 109.84087 * 242.34439 * 29 2 1 44 44 H 1.09002 * 109.84828 * 3.25857 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9972 1.3759 0.0000 4 6 3.2209 1.3642 -0.9358 5 1 4.1220 1.1125 -0.3765 6 6 3.3861 2.7232 -1.5980 7 6 2.1332 3.0361 -2.4243 8 6 2.1038 2.0667 -3.6082 9 7 2.2446 0.6984 -3.1459 10 6 1.6995 -0.2599 -3.9209 11 8 1.8656 -1.4324 -3.6451 12 7 0.9704 0.0813 -5.0018 13 6 0.2859 -0.9540 -5.7804 14 1 -0.0623 -1.7409 -5.1113 15 6 -0.8921 -0.3467 -6.4976 16 1 -1.1089 0.7053 -6.3852 17 6 -1.6929 -1.1341 -7.2973 18 7 -1.4292 -2.4152 -7.4338 19 14 -3.1536 -0.3814 -8.1859 20 1 -2.6796 0.6906 -9.0976 21 1 -3.8474 -1.4308 -8.9751 22 1 -4.0946 0.1943 -7.1918 23 6 1.2559 -1.5472 -6.8041 24 9 2.3495 -2.1109 -6.1383 25 9 0.6025 -2.5362 -7.5471 26 9 1.7029 -0.5372 -7.6628 27 6 2.9075 0.2574 -1.9426 28 1 3.8311 -0.2528 -2.2159 29 6 1.9966 -0.7186 -1.1717 30 1 -0.3634 -1.0273 0.0251 31 1 -0.3634 0.4920 -0.9022 32 1 -0.3634 0.5354 0.8772 33 1 1.2433 2.0671 -0.3771 34 1 2.2984 1.6621 1.0078 35 1 3.5180 3.4879 -0.8325 36 1 4.2592 2.7067 -2.2505 37 1 1.2424 2.8983 -1.8115 38 1 2.1767 4.0630 -2.7873 39 1 1.1568 2.1727 -4.1374 40 1 2.9241 2.3012 -4.2866 41 1 0.8988 1.0123 -5.2644 42 1 -1.9928 -2.9693 -7.9961 43 1 2.5735 -1.5842 -0.8460 44 1 1.1736 -1.0413 -1.8094 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932898538.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:23:44 Heat of formation + Delta-G solvation = -158.247782 kcal Electronic energy + Delta-G solvation = -32168.852376 eV Core-core repulsion = 27513.679763 eV Total energy + Delta-G solvation = -4655.172613 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.156 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -50.40956 -48.04042 -47.72636 -42.31283 -39.89280 -37.23159 -36.59626 -34.66175 -34.22408 -32.49297 -30.31913 -28.73245 -27.60771 -26.60122 -25.46350 -23.99437 -23.45674 -22.34361 -21.46363 -19.89932 -19.48845 -18.87949 -18.75553 -18.60422 -17.72054 -17.28977 -17.05325 -16.63014 -16.42862 -16.03900 -15.57549 -15.22268 -15.16091 -14.95317 -14.74028 -14.51090 -14.46002 -14.40347 -14.28564 -14.15703 -14.03221 -13.93268 -13.80342 -13.38599 -13.05422 -12.88448 -12.73252 -12.63372 -12.60119 -12.42825 -12.20796 -12.14000 -11.67075 -11.63777 -11.56235 -11.42168 -10.94692 -10.68730 -10.10756 -9.65766 -9.16243 -8.22068 -6.53727 1.45025 1.48150 1.55816 1.65461 2.06173 2.35165 2.55050 2.90308 2.93768 3.08138 3.45102 3.56962 3.75954 3.78785 3.86888 3.93647 4.03129 4.16906 4.28187 4.33200 4.38542 4.46859 4.53071 4.55968 4.70755 4.75321 4.81875 4.88983 4.93009 4.93272 5.02930 5.09971 5.14521 5.19870 5.39519 5.40683 5.49993 5.63349 5.78843 5.89990 5.97547 6.10329 6.50678 7.01204 7.17058 7.58729 8.70572 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.015868 B = 0.004178 C = 0.004001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1764.181860 B = 6699.700472 C = 6996.022997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.541 5.541 3 C 0.044 3.956 4 C -0.090 4.090 5 H 0.108 0.892 6 C -0.105 4.105 7 C -0.126 4.126 8 C 0.099 3.901 9 N -0.608 5.608 10 C 0.684 3.316 11 O -0.615 6.615 12 N -0.721 5.721 13 C 0.273 3.727 14 H 0.042 0.958 15 C -0.562 4.562 16 H 0.091 0.909 17 C 0.016 3.984 18 N -0.874 5.874 19 Si 0.984 3.016 20 H -0.265 1.265 21 H -0.284 1.284 22 H -0.262 1.262 23 C 0.413 3.587 24 F -0.218 7.218 25 F -0.151 7.151 26 F -0.204 7.204 27 C 0.155 3.845 28 H 0.057 0.943 29 C 0.037 3.963 30 H 0.055 0.945 31 H 0.011 0.989 32 H 0.089 0.911 33 H 0.058 0.942 34 H 0.099 0.901 35 H 0.100 0.900 36 H 0.073 0.927 37 H 0.068 0.932 38 H 0.109 0.891 39 H 0.072 0.928 40 H 0.071 0.929 41 H 0.407 0.593 42 H 0.269 0.731 43 H 0.070 0.930 44 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.176 14.318 11.836 19.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.265 5.265 3 C -0.083 4.083 4 C -0.110 4.110 5 H 0.126 0.874 6 C -0.143 4.143 7 C -0.163 4.163 8 C -0.023 4.023 9 N -0.345 5.345 10 C 0.386 3.614 11 O -0.496 6.496 12 N -0.377 5.377 13 C 0.165 3.835 14 H 0.060 0.940 15 C -0.599 4.599 16 H 0.109 0.891 17 C -0.190 4.190 18 N -0.508 5.508 19 Si 0.807 3.193 20 H -0.189 1.189 21 H -0.210 1.210 22 H -0.187 1.187 23 C 0.356 3.644 24 F -0.200 7.200 25 F -0.133 7.133 26 F -0.186 7.186 27 C 0.050 3.950 28 H 0.075 0.925 29 C -0.091 4.091 30 H 0.073 0.927 31 H 0.030 0.970 32 H 0.108 0.892 33 H 0.077 0.923 34 H 0.117 0.883 35 H 0.118 0.882 36 H 0.092 0.908 37 H 0.087 0.913 38 H 0.127 0.873 39 H 0.091 0.909 40 H 0.089 0.911 41 H 0.246 0.754 42 H 0.079 0.921 43 H 0.089 0.911 44 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 6.422 13.062 12.428 19.139 hybrid contribution -0.795 -0.052 -1.915 2.074 sum 5.627 13.010 10.513 17.648 Atomic orbital electron populations 1.22484 0.87503 1.01675 1.00487 1.63321 1.08176 1.15243 1.39769 1.23142 0.95811 0.88734 1.00654 1.21826 0.99920 0.94795 0.94436 0.87386 1.21330 0.97911 0.95096 0.99960 1.21967 0.99200 0.99484 0.95695 1.21579 1.01992 0.80343 0.98405 1.46293 1.59142 1.06225 1.22861 1.16387 0.79059 0.85336 0.80663 1.90884 1.65732 1.18688 1.74248 1.45312 1.52731 1.11085 1.28621 1.19133 0.87884 0.88921 0.87523 0.94040 1.21152 1.10293 0.97369 1.31053 0.89148 1.26000 1.00956 0.95307 0.96690 1.70528 1.36926 1.06368 1.36995 0.85211 0.77806 0.77987 0.78326 1.18943 1.20982 1.18671 1.23338 0.80296 0.76856 0.83889 1.93071 1.59307 1.86544 1.81073 1.93369 1.78614 1.62970 1.78326 1.92975 1.90557 1.61661 1.73433 1.20959 0.94380 0.95619 0.84032 0.92477 1.23181 0.98852 0.97045 0.90070 0.92654 0.97006 0.89217 0.92340 0.88274 0.88171 0.90846 0.91334 0.87299 0.90943 0.91093 0.75422 0.92140 0.91123 0.93440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.69 9.05 127.69 1.16 1.84 16 2 N -0.54 -14.03 5.41 -915.64 -4.96 -18.98 16 3 C 0.04 0.82 6.17 86.57 0.53 1.35 16 4 C -0.09 -1.64 3.22 -10.78 -0.03 -1.67 16 5 H 0.11 1.67 8.14 -2.39 -0.02 1.65 16 6 C -0.11 -1.36 5.44 30.40 0.17 -1.19 16 7 C -0.13 -1.83 6.04 30.71 0.19 -1.65 16 8 C 0.10 2.19 5.75 86.65 0.50 2.69 16 9 N -0.61 -18.57 3.06 -822.26 -2.51 -21.09 16 10 C 0.68 28.28 6.93 179.06 1.24 29.52 16 11 O -0.62 -30.49 12.27 -4.00 -0.05 -30.54 16 12 N -0.72 -30.31 4.78 -461.41 -2.21 -32.51 16 13 C 0.27 14.02 2.20 44.24 0.10 14.12 16 14 H 0.04 2.47 7.65 -2.39 -0.02 2.45 16 15 C -0.56 -28.55 8.46 25.60 0.22 -28.33 16 16 H 0.09 4.20 7.74 -2.91 -0.02 4.18 16 17 C 0.02 0.83 5.20 84.65 0.44 1.27 16 18 N -0.87 -48.91 9.51 21.44 0.20 -48.70 16 19 Si 0.98 40.41 29.54 68.60 2.03 42.43 16 20 H -0.26 -10.47 7.11 99.48 0.71 -9.76 16 21 H -0.28 -11.66 7.11 99.48 0.71 -10.95 16 22 H -0.26 -10.24 7.11 99.48 0.71 -9.54 16 23 C 0.41 21.99 2.81 71.98 0.20 22.20 16 24 F -0.22 -11.76 15.47 44.97 0.70 -11.06 16 25 F -0.15 -8.73 12.92 44.97 0.58 -8.15 16 26 F -0.20 -10.26 16.94 44.97 0.76 -9.50 16 27 C 0.16 4.36 3.07 45.75 0.14 4.50 16 28 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 29 C 0.04 1.20 5.70 86.63 0.49 1.69 16 30 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 31 H 0.01 0.32 8.12 -2.39 -0.02 0.30 16 32 H 0.09 1.77 8.14 -2.38 -0.02 1.75 16 33 H 0.06 1.06 5.18 -2.38 -0.01 1.05 16 34 H 0.10 1.48 8.14 -2.38 -0.02 1.46 16 35 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 36 H 0.07 0.96 8.10 -2.39 -0.02 0.94 16 37 H 0.07 1.11 5.79 -2.39 -0.01 1.09 16 38 H 0.11 1.03 8.14 -2.39 -0.02 1.01 16 39 H 0.07 1.66 6.00 -2.39 -0.01 1.65 16 40 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 41 H 0.41 14.57 5.97 -92.71 -0.55 14.01 16 42 H 0.27 14.28 8.31 -92.71 -0.77 13.51 16 43 H 0.07 2.38 8.14 -2.38 -0.02 2.36 16 44 H 0.05 1.92 5.03 -2.39 -0.01 1.91 16 Total: -1.00 -67.61 342.44 0.37 -67.24 By element: Atomic # 1 Polarization: 24.04 SS G_CDS: 0.49 Total: 24.53 kcal Atomic # 6 Polarization: 40.99 SS G_CDS: 5.34 Total: 46.32 kcal Atomic # 7 Polarization: -111.81 SS G_CDS: -9.47 Total: -121.28 kcal Atomic # 8 Polarization: -30.49 SS G_CDS: -0.05 Total: -30.54 kcal Atomic # 9 Polarization: -30.75 SS G_CDS: 2.04 Total: -28.71 kcal Atomic # 14 Polarization: 40.41 SS G_CDS: 2.03 Total: 42.43 kcal Total: -67.61 0.37 -67.24 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932898538.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.005 kcal (2) G-P(sol) polarization free energy of solvation -67.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds