Wall clock time and date at job start Tue Mar 31 2020 19:07:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35374 * 116.99675 * 2 1 4 4 C 1.36098 * 125.57772 * 179.97438 * 3 2 1 5 5 C 1.39907 * 107.17374 * 180.02562 * 4 3 2 6 6 C 1.37821 * 106.68252 * 359.97438 * 5 4 3 7 7 C 1.46130 * 126.03476 * 180.02562 * 6 5 4 8 8 O 1.21766 * 119.99849 * 6.88074 * 7 6 5 9 9 N 1.34775 * 120.00321 * 186.87682 * 7 6 5 10 10 C 1.47078 * 120.88420 * 176.29082 * 9 7 6 11 11 C 1.53235 * 108.52415 * 231.16348 * 10 9 7 12 12 N 1.46899 * 109.34019 * 306.17127 * 11 10 9 13 13 C 1.46906 * 110.99737 * 187.25183 * 12 11 10 14 14 C 1.53949 * 113.74139 * 273.74264 * 13 12 11 15 15 N 1.47816 * 86.03467 * 222.08675 * 14 13 12 16 16 C 1.36935 * 134.45516 * 204.64326 * 15 14 13 17 17 H 1.08000 * 119.99925 * 179.86142 * 16 15 14 18 18 C 1.38809 * 119.99904 * 359.87320 * 16 15 14 19 19 N 1.31623 * 120.00173 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 119.99970 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.47371 * 59.99359 * 20 18 16 22 22 H 1.48500 * 109.47266 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.47218 * 299.99286 * 20 18 16 24 24 C 1.47583 * 91.05147 * 24.55095 * 15 14 13 25 25 C 1.46901 * 111.26604 * 63.10496 * 12 11 10 26 26 C 1.47087 * 120.87842 * 356.27364 * 9 7 6 27 27 O 1.34013 * 125.58068 * 0.31479 * 3 2 1 28 28 H 1.08995 * 109.46998 * 60.00139 * 1 2 3 29 29 H 1.08997 * 109.46619 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47047 * 299.99767 * 1 2 3 31 31 H 1.07998 * 126.40718 * 0.02562 * 4 3 2 32 32 H 1.08003 * 126.65480 * 179.97438 * 5 4 3 33 33 H 1.09002 * 109.62277 * 111.45477 * 10 9 7 34 34 H 1.09004 * 109.62581 * 350.87878 * 10 9 7 35 35 H 1.08999 * 109.49237 * 186.20852 * 11 10 9 36 36 H 1.09007 * 109.49019 * 66.13052 * 11 10 9 37 37 H 1.08993 * 112.94334 * 45.33457 * 13 12 11 38 38 H 1.09000 * 113.76579 * 336.34555 * 14 13 12 39 39 H 1.08998 * 113.77125 * 107.74878 * 14 13 12 40 40 H 0.97002 * 119.99765 * 180.02562 * 19 18 16 41 41 H 1.09001 * 113.76380 * 221.15926 * 24 15 14 42 42 H 1.08993 * 113.87300 * 89.76944 * 24 15 14 43 43 H 1.09003 * 109.49251 * 56.85751 * 25 12 11 44 44 H 1.09007 * 109.48657 * 176.93382 * 25 12 11 45 45 H 1.09001 * 109.62461 * 248.54505 * 26 9 7 46 46 H 1.08997 * 109.62664 * 9.12651 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0436 1.2062 0.0000 4 6 3.3893 1.4093 0.0005 5 6 3.5983 2.7927 0.0009 6 6 2.3521 3.3811 0.0000 7 6 2.0793 4.8167 -0.0005 8 8 2.9942 5.6102 -0.1264 9 7 0.8150 5.2625 0.1384 10 6 0.5271 6.7024 0.2219 11 6 -0.3492 6.9531 1.4537 12 7 -1.5330 6.0855 1.3934 13 6 -2.4828 6.4157 2.4644 14 6 -2.1923 5.6962 3.7940 15 7 -3.6528 5.4862 3.8812 16 6 -4.5321 5.2782 4.9101 17 1 -5.5846 5.1516 4.7037 18 6 -4.0707 5.2302 6.2184 19 7 -2.7879 5.3842 6.4699 20 14 -5.2703 4.9472 7.6220 21 1 -5.9529 3.6418 7.4342 22 1 -4.5316 4.9382 8.9102 23 1 -6.2799 6.0360 7.6375 24 6 -3.7831 5.5930 2.4150 25 6 -1.1566 4.6664 1.4426 26 6 -0.3135 4.3219 0.2103 27 8 1.4264 2.3958 0.0060 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3632 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 4.1528 0.6455 0.0006 32 1 4.5514 3.3007 0.0017 33 1 -0.0026 7.0224 -0.6755 34 1 1.4604 7.2575 0.3172 35 1 -0.6634 7.9967 1.4702 36 1 0.2198 6.7299 2.3563 37 1 -2.6457 7.4880 2.5721 38 1 -1.6220 4.7744 3.6793 39 1 -1.7943 6.3504 4.5697 40 1 -2.4655 5.3504 7.3841 41 1 -4.6527 6.1651 2.0917 42 1 -3.6815 4.6418 1.8927 43 1 -0.5764 4.4750 2.3454 44 1 -2.0566 4.0515 1.4510 45 1 -0.9239 4.4132 -0.6882 46 1 0.0640 3.3032 0.2980 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000941614586.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:07:48 Heat of formation + Delta-G solvation = 41.534570 kcal Electronic energy + Delta-G solvation = -29849.926552 eV Core-core repulsion = 25745.273892 eV Total energy + Delta-G solvation = -4104.652660 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.05047 -40.18400 -38.99874 -38.62075 -36.69835 -34.00163 -33.35061 -31.98083 -31.27133 -29.81403 -28.25547 -27.42359 -26.18593 -24.89520 -23.92087 -23.34024 -22.33080 -22.22411 -21.03888 -20.00187 -18.93939 -18.50235 -17.35292 -17.33453 -16.88174 -16.37650 -15.69230 -15.61122 -15.32202 -15.04004 -14.87318 -14.81165 -14.38492 -14.23683 -13.80415 -13.55918 -13.42693 -13.23292 -12.99831 -12.49344 -12.37602 -12.28467 -11.94729 -11.87707 -11.73532 -11.59848 -11.22036 -10.97033 -10.87321 -10.69806 -10.62363 -10.31121 -10.26791 -10.17845 -9.94532 -9.53884 -8.90573 -8.79415 -8.28678 -7.87098 -6.90054 -5.80513 -3.13534 0.85472 1.90984 2.13684 2.71204 2.97177 3.06521 3.36222 3.40324 3.41901 4.09655 4.31835 4.46101 4.57097 4.70682 4.79435 4.92511 5.01065 5.04398 5.14342 5.20762 5.27900 5.31522 5.35092 5.36260 5.46082 5.59176 5.60678 5.63274 5.75396 5.82782 5.94162 6.02797 6.06896 6.12543 6.18805 6.27871 6.42469 6.51493 6.58664 6.86606 6.96099 7.16372 7.22522 7.33138 7.47936 7.57587 7.92433 7.93699 8.99879 9.66725 10.55153 11.36041 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.012619 B = 0.003162 C = 0.002780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2218.293307 B = 8852.259724 C =10067.803821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.263 6.263 3 C 0.208 3.792 4 C -0.242 4.242 5 C -0.080 4.080 6 C -0.100 4.100 7 C 0.607 3.393 8 O -0.529 6.529 9 N -0.602 5.602 10 C 0.120 3.880 11 C 0.041 3.959 12 N -0.529 5.529 13 C 0.035 3.965 14 C 0.132 3.868 15 N -0.609 5.609 16 C -0.224 4.224 17 H 0.080 0.920 18 C -0.007 4.007 19 N -0.922 5.922 20 Si 0.912 3.088 21 H -0.285 1.285 22 H -0.290 1.290 23 H -0.284 1.284 24 C 0.127 3.873 25 C 0.038 3.962 26 C 0.099 3.901 27 O -0.180 6.180 28 H 0.065 0.935 29 H 0.111 0.889 30 H 0.068 0.932 31 H 0.162 0.838 32 H 0.167 0.833 33 H 0.077 0.923 34 H 0.095 0.905 35 H 0.088 0.912 36 H 0.042 0.958 37 H 0.100 0.900 38 H 0.030 0.970 39 H 0.069 0.931 40 H 0.254 0.746 41 H 0.045 0.955 42 H 0.036 0.964 43 H 0.048 0.952 44 H 0.092 0.908 45 H 0.078 0.922 46 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.345 -6.428 -16.454 19.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.177 6.177 3 C 0.112 3.888 4 C -0.262 4.262 5 C -0.100 4.100 6 C -0.150 4.150 7 C 0.396 3.604 8 O -0.408 6.408 9 N -0.334 5.334 10 C -0.002 4.002 11 C -0.088 4.088 12 N -0.253 5.253 13 C -0.074 4.074 14 C 0.005 3.995 15 N -0.335 5.335 16 C -0.352 4.352 17 H 0.098 0.902 18 C -0.204 4.204 19 N -0.569 5.569 20 Si 0.742 3.258 21 H -0.212 1.212 22 H -0.216 1.216 23 H -0.210 1.210 24 C 0.000 4.000 25 C -0.091 4.091 26 C -0.023 4.023 27 O -0.081 6.081 28 H 0.083 0.917 29 H 0.130 0.870 30 H 0.086 0.914 31 H 0.180 0.820 32 H 0.184 0.816 33 H 0.095 0.905 34 H 0.113 0.887 35 H 0.106 0.894 36 H 0.060 0.940 37 H 0.118 0.882 38 H 0.047 0.953 39 H 0.087 0.913 40 H 0.064 0.936 41 H 0.064 0.936 42 H 0.053 0.947 43 H 0.066 0.934 44 H 0.110 0.890 45 H 0.096 0.904 46 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 9.240 -6.069 -16.619 19.961 hybrid contribution -0.557 -0.627 1.724 1.917 sum 8.683 -6.696 -14.896 18.497 Atomic orbital electron populations 1.23247 0.76295 1.05244 1.02993 1.86399 1.23370 1.18936 1.88976 1.21110 0.89867 0.78778 0.99072 1.20763 0.92103 0.96849 1.16512 1.21954 0.97697 0.92548 0.97830 1.21914 0.87045 0.87249 1.18788 1.16484 0.82853 0.84114 0.76980 1.90877 1.44128 1.53954 1.51885 1.48063 1.05816 1.08319 1.71209 1.21823 1.00055 0.79582 0.98780 1.22428 0.91362 0.98351 0.96637 1.62044 1.13049 1.02796 1.47445 1.24305 0.93058 1.00125 0.89917 1.22944 0.86884 0.96417 0.93216 1.45802 1.03410 1.84555 0.99766 1.18964 0.88910 1.42699 0.84583 0.90231 1.24783 0.96179 1.02277 0.97112 1.69815 1.12141 1.55875 1.19040 0.86203 0.79846 0.78107 0.81620 1.21185 1.21551 1.21014 1.22642 0.94805 0.95982 0.86547 1.22570 0.99486 0.90829 0.96200 1.22461 0.87190 0.93203 0.99416 1.84207 1.36483 1.14197 1.73244 0.91668 0.87042 0.91354 0.82011 0.81575 0.90473 0.88674 0.89357 0.94019 0.88173 0.95271 0.91261 0.93610 0.93632 0.94699 0.93382 0.88957 0.90420 0.87852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.11 10.74 101.05 1.09 1.20 16 2 O -0.26 -2.54 10.55 -41.04 -0.43 -2.98 16 3 C 0.21 2.27 7.86 29.96 0.24 2.50 16 4 C -0.24 -2.47 10.89 -39.73 -0.43 -2.91 16 5 C -0.08 -0.89 10.67 -39.11 -0.42 -1.31 16 6 C -0.10 -1.28 6.88 -36.57 -0.25 -1.54 16 7 C 0.61 8.69 7.66 -13.10 -0.10 8.59 16 8 O -0.53 -8.71 16.35 5.13 0.08 -8.63 16 9 N -0.60 -7.97 3.01 -174.20 -0.52 -8.50 16 10 C 0.12 1.47 6.59 -3.61 -0.02 1.45 16 11 C 0.04 0.56 5.61 -3.70 -0.02 0.54 16 12 N -0.53 -7.93 4.76 -228.23 -1.09 -9.02 16 13 C 0.03 0.63 4.03 -69.91 -0.28 0.35 16 14 C 0.13 3.04 6.81 -2.83 -0.02 3.02 16 15 N -0.61 -15.34 3.70 -177.86 -0.66 -16.00 16 16 C -0.22 -6.23 10.70 -15.06 -0.16 -6.39 16 17 H 0.08 2.13 7.83 -52.49 -0.41 1.71 16 18 C -0.01 -0.20 5.50 -17.43 -0.10 -0.29 16 19 N -0.92 -27.28 11.39 55.49 0.63 -26.64 16 20 Si 0.91 21.99 29.55 -169.99 -5.02 16.97 16 21 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 22 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 23 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 24 C 0.13 2.52 8.42 -2.96 -0.02 2.49 16 25 C 0.04 0.55 4.47 -3.70 -0.02 0.53 16 26 C 0.10 1.21 6.46 -3.60 -0.02 1.18 16 27 O -0.18 -2.10 6.56 -19.28 -0.13 -2.23 16 28 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.11 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.16 1.28 8.06 -52.49 -0.42 0.85 16 32 H 0.17 1.61 8.06 -52.48 -0.42 1.18 16 33 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.09 1.18 7.08 -51.93 -0.37 0.81 16 35 H 0.09 1.08 8.04 -51.93 -0.42 0.66 16 36 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.10 1.82 8.04 -51.93 -0.42 1.40 16 38 H 0.03 0.69 5.65 -51.93 -0.29 0.40 16 39 H 0.07 1.81 7.17 -51.93 -0.37 1.44 16 40 H 0.25 7.33 8.31 -40.82 -0.34 6.99 16 41 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 42 H 0.04 0.66 6.22 -51.93 -0.32 0.34 16 43 H 0.05 0.81 6.45 -51.93 -0.33 0.47 16 44 H 0.09 1.37 6.06 -51.93 -0.31 1.05 16 45 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 46 H 0.10 1.21 3.86 -55.03 -0.21 1.00 16 LS Contribution 368.29 15.07 5.55 5.55 Total: -1.00 -32.85 368.29 -8.54 -41.39 By element: Atomic # 1 Polarization: 7.06 SS G_CDS: -6.40 Total: 0.65 kcal Atomic # 6 Polarization: 9.97 SS G_CDS: -0.55 Total: 9.42 kcal Atomic # 7 Polarization: -58.52 SS G_CDS: -1.64 Total: -60.16 kcal Atomic # 8 Polarization: -13.35 SS G_CDS: -0.48 Total: -13.83 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -32.85 -8.54 -41.39 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000941614586.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.924 kcal (2) G-P(sol) polarization free energy of solvation -32.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.389 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds