Wall clock time and date at job start Tue Mar 31 2020 19:07:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35374 * 116.99675 * 2 1 4 4 C 1.36098 * 125.57772 * 179.97438 * 3 2 1 5 5 C 1.39907 * 107.17374 * 180.02562 * 4 3 2 6 6 C 1.37821 * 106.68252 * 359.97438 * 5 4 3 7 7 C 1.46130 * 126.03476 * 180.02562 * 6 5 4 8 8 O 1.21766 * 119.99849 * 6.88074 * 7 6 5 9 9 N 1.34775 * 120.00321 * 186.87682 * 7 6 5 10 10 C 1.47078 * 120.88420 * 176.29082 * 9 7 6 11 11 C 1.53235 * 108.52415 * 231.16348 * 10 9 7 12 12 N 1.46899 * 109.34019 * 306.17127 * 11 10 9 13 13 C 1.46906 * 110.99737 * 187.25183 * 12 11 10 14 14 C 1.53949 * 113.74139 * 273.74264 * 13 12 11 15 15 N 1.47816 * 86.03467 * 222.08675 * 14 13 12 16 16 C 1.36935 * 134.45516 * 204.64326 * 15 14 13 17 17 H 1.08000 * 119.99925 * 179.86142 * 16 15 14 18 18 C 1.38809 * 119.99904 * 359.87320 * 16 15 14 19 19 N 1.31623 * 120.00173 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 119.99970 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.47371 * 59.99359 * 20 18 16 22 22 H 1.48500 * 109.47266 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.47218 * 299.99286 * 20 18 16 24 24 C 1.47583 * 91.05147 * 24.55095 * 15 14 13 25 25 C 1.46901 * 111.26604 * 63.10496 * 12 11 10 26 26 C 1.47087 * 120.87842 * 356.27364 * 9 7 6 27 27 O 1.34013 * 125.58068 * 0.31479 * 3 2 1 28 28 H 1.08995 * 109.46998 * 60.00139 * 1 2 3 29 29 H 1.08997 * 109.46619 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47047 * 299.99767 * 1 2 3 31 31 H 1.07998 * 126.40718 * 0.02562 * 4 3 2 32 32 H 1.08003 * 126.65480 * 179.97438 * 5 4 3 33 33 H 1.09002 * 109.62277 * 111.45477 * 10 9 7 34 34 H 1.09004 * 109.62581 * 350.87878 * 10 9 7 35 35 H 1.08999 * 109.49237 * 186.20852 * 11 10 9 36 36 H 1.09007 * 109.49019 * 66.13052 * 11 10 9 37 37 H 1.08993 * 112.94334 * 45.33457 * 13 12 11 38 38 H 1.09000 * 113.76579 * 336.34555 * 14 13 12 39 39 H 1.08998 * 113.77125 * 107.74878 * 14 13 12 40 40 H 0.97002 * 119.99765 * 180.02562 * 19 18 16 41 41 H 1.09001 * 113.76380 * 221.15926 * 24 15 14 42 42 H 1.08993 * 113.87300 * 89.76944 * 24 15 14 43 43 H 1.09003 * 109.49251 * 56.85751 * 25 12 11 44 44 H 1.09007 * 109.48657 * 176.93382 * 25 12 11 45 45 H 1.09001 * 109.62461 * 248.54505 * 26 9 7 46 46 H 1.08997 * 109.62664 * 9.12651 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0436 1.2062 0.0000 4 6 3.3893 1.4093 0.0005 5 6 3.5983 2.7927 0.0009 6 6 2.3521 3.3811 0.0000 7 6 2.0793 4.8167 -0.0005 8 8 2.9942 5.6102 -0.1264 9 7 0.8150 5.2625 0.1384 10 6 0.5271 6.7024 0.2219 11 6 -0.3492 6.9531 1.4537 12 7 -1.5330 6.0855 1.3934 13 6 -2.4828 6.4157 2.4644 14 6 -2.1923 5.6962 3.7940 15 7 -3.6528 5.4862 3.8812 16 6 -4.5321 5.2782 4.9101 17 1 -5.5846 5.1516 4.7037 18 6 -4.0707 5.2302 6.2184 19 7 -2.7879 5.3842 6.4699 20 14 -5.2703 4.9472 7.6220 21 1 -5.9529 3.6418 7.4342 22 1 -4.5316 4.9382 8.9102 23 1 -6.2799 6.0360 7.6375 24 6 -3.7831 5.5930 2.4150 25 6 -1.1566 4.6664 1.4426 26 6 -0.3135 4.3219 0.2103 27 8 1.4264 2.3958 0.0060 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3632 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 4.1528 0.6455 0.0006 32 1 4.5514 3.3007 0.0017 33 1 -0.0026 7.0224 -0.6755 34 1 1.4604 7.2575 0.3172 35 1 -0.6634 7.9967 1.4702 36 1 0.2198 6.7299 2.3563 37 1 -2.6457 7.4880 2.5721 38 1 -1.6220 4.7744 3.6793 39 1 -1.7943 6.3504 4.5697 40 1 -2.4655 5.3504 7.3841 41 1 -4.6527 6.1651 2.0917 42 1 -3.6815 4.6418 1.8927 43 1 -0.5764 4.4750 2.3454 44 1 -2.0566 4.0515 1.4510 45 1 -0.9239 4.4132 -0.6882 46 1 0.0640 3.3032 0.2980 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000941614586.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:07:48 Heat of formation + Delta-G solvation = 19.003867 kcal Electronic energy + Delta-G solvation = -29850.903557 eV Core-core repulsion = 25745.273892 eV Total energy + Delta-G solvation = -4105.629665 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.91342 -41.37022 -40.28297 -39.48008 -38.04824 -35.34346 -34.32548 -33.81350 -32.42191 -30.73879 -29.73856 -28.42651 -27.48274 -26.63960 -25.02821 -24.70797 -23.76390 -23.07190 -22.10938 -21.12560 -20.21812 -19.52138 -18.76241 -18.44032 -18.17836 -17.56482 -16.95628 -16.78504 -16.52172 -16.29160 -16.22843 -15.75397 -15.67364 -15.45031 -15.38192 -14.64132 -14.32327 -14.16762 -14.14771 -13.85927 -13.80729 -13.44631 -13.22699 -13.12438 -13.02284 -12.78122 -12.68153 -12.51964 -12.31797 -12.20556 -12.01149 -11.90648 -11.77457 -11.40979 -11.35582 -11.11557 -10.85607 -9.97791 -9.32084 -9.13201 -8.88181 -7.92511 -5.26802 -0.08002 1.04778 1.29246 1.43516 1.46794 1.53037 1.78049 2.03286 2.17211 2.43965 2.83270 3.27471 3.37018 3.47213 3.72638 3.79947 3.87756 3.95247 4.08941 4.19232 4.21662 4.26313 4.26979 4.38625 4.42042 4.46502 4.54569 4.65622 4.68332 4.75006 4.78576 4.83928 4.86669 4.90202 4.96489 5.03996 5.20479 5.21458 5.27281 5.33939 5.45501 5.49907 5.88283 5.99626 6.04938 6.12375 6.21627 6.86089 6.88094 7.58447 8.53449 9.23406 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.012619 B = 0.003162 C = 0.002780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2218.293307 B = 8852.259724 C =10067.803821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.008 3.992 2 O -0.267 6.267 3 C 0.207 3.793 4 C -0.244 4.244 5 C -0.073 4.073 6 C -0.129 4.129 7 C 0.604 3.396 8 O -0.558 6.558 9 N -0.606 5.606 10 C 0.124 3.876 11 C 0.042 3.958 12 N -0.514 5.514 13 C 0.065 3.935 14 C 0.132 3.868 15 N -0.639 5.639 16 C -0.234 4.234 17 H 0.087 0.913 18 C -0.068 4.068 19 N -0.956 5.956 20 Si 0.979 3.021 21 H -0.276 1.276 22 H -0.297 1.297 23 H -0.274 1.274 24 C 0.131 3.869 25 C 0.042 3.958 26 C 0.109 3.891 27 O -0.183 6.183 28 H 0.074 0.926 29 H 0.137 0.863 30 H 0.061 0.939 31 H 0.186 0.814 32 H 0.178 0.822 33 H 0.098 0.902 34 H 0.094 0.906 35 H 0.107 0.893 36 H 0.018 0.982 37 H 0.106 0.894 38 H 0.019 0.981 39 H 0.029 0.971 40 H 0.247 0.753 41 H 0.060 0.940 42 H 0.053 0.947 43 H 0.019 0.981 44 H 0.092 0.908 45 H 0.098 0.902 46 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.557 -7.233 -18.223 21.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 O -0.181 6.181 3 C 0.110 3.890 4 C -0.263 4.263 5 C -0.093 4.093 6 C -0.179 4.179 7 C 0.395 3.605 8 O -0.440 6.440 9 N -0.337 5.337 10 C 0.003 3.997 11 C -0.086 4.086 12 N -0.238 5.238 13 C -0.045 4.045 14 C 0.005 3.995 15 N -0.366 5.366 16 C -0.362 4.362 17 H 0.105 0.895 18 C -0.260 4.260 19 N -0.605 5.605 20 Si 0.807 3.193 21 H -0.202 1.202 22 H -0.223 1.223 23 H -0.200 1.200 24 C 0.006 3.994 25 C -0.087 4.087 26 C -0.012 4.012 27 O -0.084 6.084 28 H 0.093 0.907 29 H 0.155 0.845 30 H 0.080 0.920 31 H 0.203 0.797 32 H 0.195 0.805 33 H 0.116 0.884 34 H 0.112 0.888 35 H 0.125 0.875 36 H 0.037 0.963 37 H 0.124 0.876 38 H 0.037 0.963 39 H 0.047 0.953 40 H 0.055 0.945 41 H 0.078 0.922 42 H 0.070 0.930 43 H 0.037 0.963 44 H 0.110 0.890 45 H 0.116 0.884 46 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 8.422 -6.880 -18.437 21.405 hybrid contribution -0.306 -0.470 2.222 2.292 sum 8.116 -7.350 -16.215 19.566 Atomic orbital electron populations 1.23517 0.74810 1.07057 1.03132 1.86413 1.24903 1.18124 1.88647 1.21416 0.90370 0.78872 0.98325 1.21084 0.92486 0.96882 1.15855 1.22237 0.97726 0.93134 0.96221 1.21746 0.87835 0.86939 1.21355 1.16662 0.82729 0.84657 0.76489 1.90848 1.44845 1.54880 1.53450 1.48174 1.05863 1.08842 1.70811 1.21836 0.99872 0.79307 0.98710 1.22505 0.90621 0.99041 0.96459 1.62095 1.13343 1.03377 1.44971 1.23872 0.92940 0.99665 0.88000 1.22856 0.85952 0.95885 0.94831 1.46177 1.04012 1.84627 1.01774 1.19408 0.89844 1.41318 0.85663 0.89545 1.25637 0.97787 1.02946 0.99670 1.70030 1.14031 1.57659 1.18819 0.85147 0.77755 0.78419 0.78005 1.20186 1.22303 1.20003 1.22787 0.95962 0.97069 0.83620 1.22529 0.99418 0.90408 0.96312 1.22434 0.86658 0.93371 0.98760 1.84133 1.36443 1.14354 1.73509 0.90689 0.84499 0.92035 0.79696 0.80452 0.88385 0.88756 0.87479 0.96348 0.87612 0.96313 0.95276 0.94456 0.92206 0.92975 0.96254 0.88988 0.88355 0.87223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.10 10.74 113.37 1.22 1.32 16 2 O -0.27 -4.70 10.55 -64.44 -0.68 -5.38 16 3 C 0.21 4.21 7.86 67.32 0.53 4.74 16 4 C -0.24 -4.57 10.89 22.18 0.24 -4.32 16 5 C -0.07 -1.55 10.67 22.58 0.24 -1.31 16 6 C -0.13 -3.24 6.88 24.22 0.17 -3.07 16 7 C 0.60 17.10 7.66 86.29 0.66 17.76 16 8 O -0.56 -18.37 16.35 -4.56 -0.07 -18.44 16 9 N -0.61 -15.46 3.01 -823.23 -2.48 -17.93 16 10 C 0.12 2.89 6.59 86.35 0.57 3.46 16 11 C 0.04 1.11 5.61 86.38 0.48 1.59 16 12 N -0.51 -14.75 4.76 -875.97 -4.17 -18.92 16 13 C 0.06 2.31 4.03 46.67 0.19 2.50 16 14 C 0.13 6.25 6.81 86.44 0.59 6.84 16 15 N -0.64 -32.36 3.70 -716.64 -2.65 -35.01 16 16 C -0.23 -13.05 10.70 84.03 0.90 -12.15 16 17 H 0.09 4.56 7.83 -2.91 -0.02 4.54 16 18 C -0.07 -3.86 5.50 84.86 0.47 -3.40 16 19 N -0.96 -58.44 11.39 21.65 0.25 -58.20 16 20 Si 0.98 45.64 29.55 68.60 2.03 47.67 16 21 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 22 H -0.30 -14.03 7.11 99.48 0.71 -13.33 16 23 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 24 C 0.13 5.00 8.42 86.49 0.73 5.73 16 25 C 0.04 1.19 4.47 86.38 0.39 1.58 16 26 C 0.11 2.50 6.46 86.35 0.56 3.06 16 27 O -0.18 -4.08 6.56 13.44 0.09 -4.00 16 28 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.14 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.19 2.48 8.06 -2.91 -0.02 2.45 16 32 H 0.18 3.26 8.06 -2.91 -0.02 3.24 16 33 H 0.10 1.92 8.14 -2.39 -0.02 1.90 16 34 H 0.09 2.26 7.08 -2.38 -0.02 2.24 16 35 H 0.11 2.42 8.04 -2.39 -0.02 2.40 16 36 H 0.02 0.57 8.14 -2.38 -0.02 0.55 16 37 H 0.11 3.72 8.04 -2.39 -0.02 3.70 16 38 H 0.02 0.94 5.65 -2.39 -0.01 0.93 16 39 H 0.03 1.59 7.17 -2.39 -0.02 1.58 16 40 H 0.25 14.75 8.31 -92.71 -0.77 13.98 16 41 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 42 H 0.05 1.86 6.22 -2.39 -0.01 1.84 16 43 H 0.02 0.67 6.45 -2.39 -0.02 0.65 16 44 H 0.09 2.62 6.06 -2.38 -0.01 2.61 16 45 H 0.10 1.90 8.14 -2.39 -0.02 1.88 16 46 H 0.11 2.44 3.86 -51.50 -0.20 2.24 16 Total: -1.00 -72.18 368.29 1.05 -71.13 By element: Atomic # 1 Polarization: 13.96 SS G_CDS: 0.82 Total: 14.78 kcal Atomic # 6 Polarization: 16.38 SS G_CDS: 7.93 Total: 24.31 kcal Atomic # 7 Polarization: -121.01 SS G_CDS: -9.05 Total: -130.06 kcal Atomic # 8 Polarization: -27.15 SS G_CDS: -0.67 Total: -27.82 kcal Atomic # 14 Polarization: 45.64 SS G_CDS: 2.03 Total: 47.67 kcal Total: -72.18 1.05 -71.13 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000941614586.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.136 kcal (2) G-P(sol) polarization free energy of solvation -72.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.132 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds