Wall clock time and date at job start Tue Mar 31 2020 18:48:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46509 * 1 3 3 C 1.34770 * 119.99580 * 2 1 4 4 O 1.21606 * 120.00042 * 185.62585 * 3 2 1 5 5 C 1.47497 * 120.00249 * 5.62241 * 3 2 1 6 6 C 1.37804 * 126.77414 * 7.07209 * 5 3 2 7 7 O 1.33496 * 108.34199 * 179.86309 * 6 5 3 8 8 C 1.34883 * 109.88724 * 0.41047 * 7 6 5 9 9 C 1.46774 * 125.65126 * 179.76167 * 8 7 6 10 10 N 1.34773 * 120.00153 * 359.97438 * 9 8 7 11 11 O 1.21683 * 119.99739 * 179.97438 * 9 8 7 12 12 C 1.36059 * 108.69170 * 359.74541 * 8 7 6 13 13 C 1.46495 * 119.99848 * 180.02562 * 2 1 3 14 14 H 1.08999 * 109.16242 * 180.66515 * 13 2 1 15 15 C 1.50127 * 109.20652 * 299.99504 * 13 2 1 16 16 C 1.52530 * 105.54069 * 218.10089 * 15 13 2 17 17 C 1.46238 * 114.27783 * 270.53001 * 16 15 13 18 18 N 1.50166 * 107.53647 * 58.40585 * 17 16 15 19 19 C 1.36931 * 120.53994 * 109.61441 * 18 17 16 20 20 H 1.08000 * 120.00092 * 211.35662 * 19 18 17 21 21 C 1.38815 * 119.99968 * 31.35769 * 19 18 17 22 22 N 1.31619 * 120.00003 * 20.82152 * 21 19 18 23 23 Si 1.86798 * 119.99904 * 200.82761 * 21 19 18 24 24 H 1.48501 * 109.47228 * 94.98561 * 23 21 19 25 25 H 1.48500 * 109.47207 * 214.98174 * 23 21 19 26 26 H 1.48500 * 109.47401 * 334.98448 * 23 21 19 27 27 C 1.43435 * 118.92187 * 289.58668 * 18 17 16 28 28 C 1.54906 * 116.07709 * 91.57174 * 27 18 17 29 29 H 1.09002 * 109.47059 * 275.47932 * 1 2 3 30 30 H 1.09003 * 109.47105 * 35.48330 * 1 2 3 31 31 H 1.09006 * 109.46895 * 155.48247 * 1 2 3 32 32 H 1.08004 * 125.82793 * 359.97438 * 6 5 3 33 33 H 0.96994 * 120.00430 * 359.97438 * 10 9 8 34 34 H 0.97011 * 119.99930 * 179.97438 * 10 9 8 35 35 H 1.07994 * 126.68299 * 179.97438 * 12 8 7 36 36 H 1.08999 * 110.24551 * 99.06023 * 15 13 2 37 37 H 1.08993 * 110.25368 * 337.14359 * 15 13 2 38 38 H 1.09009 * 108.51805 * 31.76129 * 16 15 13 39 39 H 1.08988 * 108.52480 * 149.43481 * 16 15 13 40 40 H 1.09004 * 109.84355 * 177.91719 * 17 16 15 41 41 H 1.09006 * 109.84091 * 298.89722 * 17 16 15 42 42 H 0.97002 * 119.99655 * 180.02562 * 22 21 19 43 43 H 1.09000 * 108.15598 * 213.28283 * 27 18 17 44 44 H 1.08996 * 108.16463 * 330.06626 * 27 18 17 45 45 H 1.08996 * 109.36091 * 78.83958 * 28 27 18 46 46 H 1.08996 * 109.36022 * 198.43372 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3505 1.1698 -0.1032 5 6 1.4067 2.4415 0.1251 6 6 0.0623 2.5985 0.3840 7 8 -0.2084 3.9051 0.4222 8 6 0.9152 4.6135 0.1874 9 6 1.0103 6.0775 0.1450 10 7 -0.0883 6.8305 0.3509 11 8 2.0812 6.6115 -0.0760 12 6 1.9458 3.7459 -0.0032 13 6 2.1975 -1.2687 -0.0006 14 1 3.2680 -1.0638 0.0115 15 6 1.8307 -2.0513 1.2269 16 6 3.1216 -2.7224 1.6847 17 6 3.3553 -4.0408 1.0965 18 7 3.3839 -3.8720 -0.3954 19 6 4.5573 -4.0061 -1.0884 20 1 4.7210 -3.4330 -1.9890 21 6 5.5362 -4.8787 -0.6334 22 7 5.2161 -5.8570 0.1869 23 14 7.3080 -4.6645 -1.1851 24 1 8.0484 -3.8679 -0.1740 25 1 7.9462 -5.9976 -1.3292 26 1 7.3378 -3.9577 -2.4908 27 6 2.1621 -3.5685 -1.0827 28 6 1.8492 -2.0648 -1.2837 29 1 -0.3633 0.0981 1.0230 30 1 -0.3633 0.8368 -0.5965 31 1 -0.3633 -0.9351 -0.4265 32 1 -0.6503 1.8006 0.5326 33 1 -0.9420 6.4049 0.5267 34 1 -0.0253 7.7981 0.3232 35 1 2.9741 4.0015 -0.2121 36 1 1.0800 -2.8035 0.9843 37 1 1.4573 -1.3831 2.0028 38 1 3.9592 -2.0745 1.4260 39 1 3.0904 -2.8299 2.7688 40 1 4.3102 -4.4364 1.4426 41 1 2.5493 -4.7191 1.3768 42 1 5.9003 -6.4665 0.5051 43 1 2.1976 -4.0422 -2.0638 44 1 1.3384 -4.0121 -0.5234 45 1 2.4370 -1.6817 -2.1178 46 1 0.7890 -1.9427 -1.5052 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000948647659.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:48:12 Heat of formation + Delta-G solvation = -8.059230 kcal Electronic energy + Delta-G solvation = -29444.866875 eV Core-core repulsion = 25338.063666 eV Total energy + Delta-G solvation = -4106.803208 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -43.19682 -40.01020 -39.53084 -37.76175 -35.52345 -34.33950 -33.58556 -32.81546 -31.64863 -30.90532 -29.71309 -27.46121 -26.21106 -24.68255 -24.04917 -23.77868 -22.40732 -21.15942 -20.09477 -19.93833 -18.94259 -18.43505 -17.33362 -17.10164 -16.90406 -16.68787 -15.94856 -15.77951 -15.44974 -14.87165 -14.71640 -14.62265 -14.28751 -13.92852 -13.76866 -13.47191 -13.25284 -13.19443 -13.09102 -12.66764 -12.41246 -12.13299 -11.90549 -11.57843 -11.19024 -10.89484 -10.82909 -10.74352 -10.47181 -10.36700 -10.29315 -10.25339 -10.14599 -9.83589 -9.75800 -9.64051 -9.44186 -9.13549 -8.52043 -8.41258 -6.63598 -5.78904 -3.23381 0.57347 1.34894 2.17133 2.70667 2.85203 3.18989 3.28336 3.42199 3.49711 3.52398 4.18474 4.22420 4.48607 4.53403 4.76416 5.00588 5.07450 5.15658 5.17735 5.33413 5.35519 5.41427 5.45413 5.60836 5.69442 5.80652 5.86962 6.02755 6.07865 6.11337 6.26488 6.30666 6.34681 6.56076 6.59097 6.72985 6.79989 6.81992 6.83950 6.98650 6.99990 7.36885 7.45929 7.65195 7.65679 7.85822 8.23886 8.51312 9.18158 9.87281 10.42913 11.28571 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.020492 B = 0.002610 C = 0.002425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1366.076483 B =10725.344695 C =11541.557321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.055 3.945 2 N -0.606 5.606 3 C 0.578 3.422 4 O -0.525 6.525 5 C -0.228 4.228 6 C 0.024 3.976 7 O -0.157 6.157 8 C -0.097 4.097 9 C 0.612 3.388 10 N -0.844 5.844 11 O -0.519 6.519 12 C -0.059 4.059 13 C 0.149 3.851 14 H 0.109 0.891 15 C -0.118 4.118 16 C -0.133 4.133 17 C 0.149 3.851 18 N -0.583 5.583 19 C -0.253 4.253 20 H 0.063 0.937 21 C 0.007 3.993 22 N -0.895 5.895 23 Si 0.896 3.104 24 H -0.287 1.287 25 H -0.292 1.292 26 H -0.278 1.278 27 C 0.162 3.838 28 C -0.152 4.152 29 H 0.060 0.940 30 H 0.073 0.927 31 H 0.087 0.913 32 H 0.238 0.762 33 H 0.407 0.593 34 H 0.410 0.590 35 H 0.171 0.829 36 H 0.069 0.931 37 H 0.055 0.945 38 H 0.060 0.940 39 H 0.042 0.958 40 H 0.098 0.902 41 H 0.022 0.978 42 H 0.253 0.747 43 H 0.041 0.959 44 H 0.028 0.972 45 H 0.055 0.945 46 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.993 18.359 2.983 26.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 N -0.338 5.338 3 C 0.366 3.634 4 O -0.402 6.402 5 C -0.233 4.233 6 C -0.048 4.048 7 O -0.051 6.051 8 C -0.148 4.148 9 C 0.397 3.603 10 N -0.408 5.408 11 O -0.395 6.395 12 C -0.080 4.080 13 C 0.048 3.952 14 H 0.127 0.873 15 C -0.156 4.156 16 C -0.172 4.172 17 C 0.025 3.975 18 N -0.304 5.304 19 C -0.383 4.383 20 H 0.081 0.919 21 C -0.192 4.192 22 N -0.538 5.538 23 Si 0.726 3.274 24 H -0.214 1.214 25 H -0.219 1.219 26 H -0.203 1.203 27 C 0.032 3.968 28 C -0.193 4.193 29 H 0.079 0.921 30 H 0.091 0.909 31 H 0.105 0.895 32 H 0.253 0.747 33 H 0.236 0.764 34 H 0.241 0.759 35 H 0.189 0.811 36 H 0.087 0.913 37 H 0.073 0.927 38 H 0.079 0.921 39 H 0.060 0.940 40 H 0.116 0.884 41 H 0.041 0.959 42 H 0.063 0.937 43 H 0.059 0.941 44 H 0.046 0.954 45 H 0.074 0.926 46 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -17.714 18.522 2.883 25.791 hybrid contribution 0.483 0.194 -0.187 0.553 sum -17.231 18.716 2.696 25.583 Atomic orbital electron populations 1.22271 0.81327 1.04035 1.01151 1.48090 1.06318 1.06565 1.72850 1.17272 0.86776 0.82254 0.77065 1.90841 1.13381 1.86689 1.49287 1.20870 0.94073 0.95330 1.13035 1.26465 0.97144 0.83012 0.98169 1.83923 1.34835 1.18031 1.68340 1.21783 0.85202 0.92497 1.15339 1.16490 0.84368 0.83144 0.76318 1.43663 1.11287 1.10993 1.74844 1.90963 1.27906 1.71509 1.49153 1.21943 1.00558 0.89662 0.95831 1.21477 0.98154 0.80071 0.95466 0.87344 1.21380 0.99217 0.98798 0.96243 1.21005 0.96368 1.01011 0.98860 1.20307 1.02244 0.91785 0.83143 1.43937 1.03874 1.80809 1.01777 1.19103 0.92796 1.17844 1.08508 0.91918 1.25003 0.99198 0.94942 1.00038 1.70048 1.32106 1.14987 1.36706 0.86370 0.85470 0.76941 0.78625 1.21376 1.21865 1.20277 1.20240 0.89429 0.90518 0.96631 1.23368 0.99287 1.00255 0.96438 0.92143 0.90860 0.89482 0.74651 0.76415 0.75865 0.81149 0.91264 0.92652 0.92107 0.93962 0.88404 0.95922 0.93697 0.94073 0.95422 0.92633 0.92889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.44 7.88 59.85 0.47 0.91 16 2 N -0.61 -8.23 2.63 -175.62 -0.46 -8.69 16 3 C 0.58 9.06 7.66 -12.49 -0.10 8.96 16 4 O -0.53 -10.77 16.28 5.27 0.09 -10.68 16 5 C -0.23 -2.77 5.99 -104.95 -0.63 -3.39 16 6 C 0.02 0.19 10.07 30.57 0.31 0.50 16 7 O -0.16 -1.25 10.33 6.19 0.06 -1.19 16 8 C -0.10 -1.00 7.09 -36.92 -0.26 -1.26 16 9 C 0.61 6.09 8.06 -12.81 -0.10 5.99 16 10 N -0.84 -4.40 8.87 30.28 0.27 -4.13 16 11 O -0.52 -7.18 17.68 5.20 0.09 -7.08 16 12 C -0.06 -0.74 10.42 -39.03 -0.41 -1.14 16 13 C 0.15 2.51 2.28 -68.32 -0.16 2.36 16 14 H 0.11 2.32 5.58 -51.93 -0.29 2.03 16 15 C -0.12 -1.86 4.90 -28.40 -0.14 -2.00 16 16 C -0.13 -2.55 5.20 -30.19 -0.16 -2.71 16 17 C 0.15 3.40 5.37 -5.20 -0.03 3.37 16 18 N -0.58 -14.12 2.56 -175.08 -0.45 -14.57 16 19 C -0.25 -6.92 9.53 -15.06 -0.14 -7.06 16 20 H 0.06 1.74 7.91 -52.49 -0.42 1.32 16 21 C 0.01 0.20 4.89 -17.43 -0.09 0.12 16 22 N -0.89 -25.71 11.35 55.49 0.63 -25.08 16 23 Si 0.90 22.11 29.60 -169.99 -5.03 17.08 16 24 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 25 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 26 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 27 C 0.16 3.25 5.18 -4.66 -0.02 3.23 16 28 C -0.15 -2.56 5.95 -24.69 -0.15 -2.71 16 29 H 0.06 0.35 7.42 -51.93 -0.39 -0.04 16 30 H 0.07 0.43 5.27 -51.93 -0.27 0.16 16 31 H 0.09 0.67 6.41 -51.93 -0.33 0.34 16 32 H 0.24 0.95 4.43 -52.48 -0.23 0.71 16 33 H 0.41 1.14 8.57 -40.82 -0.35 0.79 16 34 H 0.41 1.46 8.93 -40.82 -0.36 1.10 16 35 H 0.17 2.29 8.06 -52.49 -0.42 1.87 16 36 H 0.07 1.05 6.28 -51.93 -0.33 0.72 16 37 H 0.05 0.78 7.91 -51.93 -0.41 0.37 16 38 H 0.06 1.31 6.94 -51.92 -0.36 0.95 16 39 H 0.04 0.73 8.14 -51.94 -0.42 0.31 16 40 H 0.10 2.56 5.72 -51.93 -0.30 2.26 16 41 H 0.02 0.50 8.12 -51.93 -0.42 0.08 16 42 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 43 H 0.04 0.87 8.00 -51.93 -0.42 0.45 16 44 H 0.03 0.52 6.88 -51.93 -0.36 0.16 16 45 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 46 H 0.05 0.72 6.28 -51.93 -0.33 0.40 16 LS Contribution 364.39 15.07 5.49 5.49 Total: -1.00 -35.48 364.39 -6.87 -42.34 By element: Atomic # 1 Polarization: 7.30 SS G_CDS: -5.96 Total: 1.34 kcal Atomic # 6 Polarization: 6.76 SS G_CDS: -1.60 Total: 5.16 kcal Atomic # 7 Polarization: -52.45 SS G_CDS: -0.01 Total: -52.46 kcal Atomic # 8 Polarization: -19.19 SS G_CDS: 0.24 Total: -18.95 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.03 Total: 17.08 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -35.48 -6.87 -42.34 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000948647659.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.284 kcal (2) G-P(sol) polarization free energy of solvation -35.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds