Wall clock time and date at job start Tue Mar 31 2020 18:48:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46509 * 1 3 3 C 1.34770 * 119.99580 * 2 1 4 4 O 1.21606 * 120.00042 * 185.62585 * 3 2 1 5 5 C 1.47497 * 120.00249 * 5.62241 * 3 2 1 6 6 C 1.37804 * 126.77414 * 7.07209 * 5 3 2 7 7 O 1.33496 * 108.34199 * 179.86309 * 6 5 3 8 8 C 1.34883 * 109.88724 * 0.41047 * 7 6 5 9 9 C 1.46774 * 125.65126 * 179.76167 * 8 7 6 10 10 N 1.34773 * 120.00153 * 359.97438 * 9 8 7 11 11 O 1.21683 * 119.99739 * 179.97438 * 9 8 7 12 12 C 1.36059 * 108.69170 * 359.74541 * 8 7 6 13 13 C 1.46495 * 119.99848 * 180.02562 * 2 1 3 14 14 H 1.08999 * 109.16242 * 180.66515 * 13 2 1 15 15 C 1.50127 * 109.20652 * 299.99504 * 13 2 1 16 16 C 1.52530 * 105.54069 * 218.10089 * 15 13 2 17 17 C 1.46238 * 114.27783 * 270.53001 * 16 15 13 18 18 N 1.50166 * 107.53647 * 58.40585 * 17 16 15 19 19 C 1.36931 * 120.53994 * 109.61441 * 18 17 16 20 20 H 1.08000 * 120.00092 * 211.35662 * 19 18 17 21 21 C 1.38815 * 119.99968 * 31.35769 * 19 18 17 22 22 N 1.31619 * 120.00003 * 20.82152 * 21 19 18 23 23 Si 1.86798 * 119.99904 * 200.82761 * 21 19 18 24 24 H 1.48501 * 109.47228 * 94.98561 * 23 21 19 25 25 H 1.48500 * 109.47207 * 214.98174 * 23 21 19 26 26 H 1.48500 * 109.47401 * 334.98448 * 23 21 19 27 27 C 1.43435 * 118.92187 * 289.58668 * 18 17 16 28 28 C 1.54906 * 116.07709 * 91.57174 * 27 18 17 29 29 H 1.09002 * 109.47059 * 275.47932 * 1 2 3 30 30 H 1.09003 * 109.47105 * 35.48330 * 1 2 3 31 31 H 1.09006 * 109.46895 * 155.48247 * 1 2 3 32 32 H 1.08004 * 125.82793 * 359.97438 * 6 5 3 33 33 H 0.96994 * 120.00430 * 359.97438 * 10 9 8 34 34 H 0.97011 * 119.99930 * 179.97438 * 10 9 8 35 35 H 1.07994 * 126.68299 * 179.97438 * 12 8 7 36 36 H 1.08999 * 110.24551 * 99.06023 * 15 13 2 37 37 H 1.08993 * 110.25368 * 337.14359 * 15 13 2 38 38 H 1.09009 * 108.51805 * 31.76129 * 16 15 13 39 39 H 1.08988 * 108.52480 * 149.43481 * 16 15 13 40 40 H 1.09004 * 109.84355 * 177.91719 * 17 16 15 41 41 H 1.09006 * 109.84091 * 298.89722 * 17 16 15 42 42 H 0.97002 * 119.99655 * 180.02562 * 22 21 19 43 43 H 1.09000 * 108.15598 * 213.28283 * 27 18 17 44 44 H 1.08996 * 108.16463 * 330.06626 * 27 18 17 45 45 H 1.08996 * 109.36091 * 78.83958 * 28 27 18 46 46 H 1.08996 * 109.36022 * 198.43372 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3505 1.1698 -0.1032 5 6 1.4067 2.4415 0.1251 6 6 0.0623 2.5985 0.3840 7 8 -0.2084 3.9051 0.4222 8 6 0.9152 4.6135 0.1874 9 6 1.0103 6.0775 0.1450 10 7 -0.0883 6.8305 0.3509 11 8 2.0812 6.6115 -0.0760 12 6 1.9458 3.7459 -0.0032 13 6 2.1975 -1.2687 -0.0006 14 1 3.2680 -1.0638 0.0115 15 6 1.8307 -2.0513 1.2269 16 6 3.1216 -2.7224 1.6847 17 6 3.3553 -4.0408 1.0965 18 7 3.3839 -3.8720 -0.3954 19 6 4.5573 -4.0061 -1.0884 20 1 4.7210 -3.4330 -1.9890 21 6 5.5362 -4.8787 -0.6334 22 7 5.2161 -5.8570 0.1869 23 14 7.3080 -4.6645 -1.1851 24 1 8.0484 -3.8679 -0.1740 25 1 7.9462 -5.9976 -1.3292 26 1 7.3378 -3.9577 -2.4908 27 6 2.1621 -3.5685 -1.0827 28 6 1.8492 -2.0648 -1.2837 29 1 -0.3633 0.0981 1.0230 30 1 -0.3633 0.8368 -0.5965 31 1 -0.3633 -0.9351 -0.4265 32 1 -0.6503 1.8006 0.5326 33 1 -0.9420 6.4049 0.5267 34 1 -0.0253 7.7981 0.3232 35 1 2.9741 4.0015 -0.2121 36 1 1.0800 -2.8035 0.9843 37 1 1.4573 -1.3831 2.0028 38 1 3.9592 -2.0745 1.4260 39 1 3.0904 -2.8299 2.7688 40 1 4.3102 -4.4364 1.4426 41 1 2.5493 -4.7191 1.3768 42 1 5.9003 -6.4665 0.5051 43 1 2.1976 -4.0422 -2.0638 44 1 1.3384 -4.0121 -0.5234 45 1 2.4370 -1.6817 -2.1178 46 1 0.7890 -1.9427 -1.5052 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000948647659.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:48:11 Heat of formation + Delta-G solvation = -35.685670 kcal Electronic energy + Delta-G solvation = -29446.064847 eV Core-core repulsion = 25338.063666 eV Total energy + Delta-G solvation = -4108.001181 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -43.98162 -41.19351 -40.34668 -39.26793 -36.88504 -35.15894 -34.75945 -34.09791 -33.28725 -32.35167 -30.83533 -28.39247 -27.86159 -26.04001 -25.47852 -24.78319 -23.68079 -22.00744 -21.72681 -20.92983 -20.30632 -19.29707 -18.51759 -18.02244 -17.94741 -17.65856 -17.22236 -16.97866 -16.76024 -16.38884 -15.86889 -15.71699 -15.51705 -15.37554 -14.96104 -14.91626 -14.35216 -14.34624 -14.07983 -14.01614 -13.82275 -13.55788 -13.19816 -13.12417 -12.79685 -12.66711 -12.55412 -12.13873 -11.93677 -11.74331 -11.70053 -11.56525 -11.38119 -11.26338 -11.13890 -11.04077 -10.89962 -10.48654 -9.91268 -9.64118 -8.62321 -7.90129 -5.35401 -0.17246 0.41209 1.40003 1.40719 1.44271 1.51582 1.87081 1.90280 2.22923 2.48615 2.49274 3.20422 3.30264 3.57547 3.60684 3.74094 3.90369 4.09521 4.14498 4.24902 4.27105 4.33457 4.45410 4.49726 4.60350 4.61257 4.66501 4.78010 4.85757 4.88733 4.93655 5.02387 5.11916 5.22932 5.26195 5.38482 5.42537 5.46929 5.63969 5.66368 5.70307 5.72652 5.78563 6.25102 6.39493 6.44423 7.07720 7.12236 7.13020 7.88535 8.39324 9.14192 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.020492 B = 0.002610 C = 0.002425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1366.076483 B =10725.344695 C =11541.557321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 N -0.600 5.600 3 C 0.572 3.428 4 O -0.596 6.596 5 C -0.262 4.262 6 C 0.077 3.923 7 O -0.135 6.135 8 C -0.088 4.088 9 C 0.610 3.390 10 N -0.814 5.814 11 O -0.568 6.568 12 C -0.090 4.090 13 C 0.157 3.843 14 H 0.051 0.949 15 C -0.101 4.101 16 C -0.127 4.127 17 C 0.155 3.845 18 N -0.601 5.601 19 C -0.258 4.258 20 H 0.048 0.952 21 C -0.039 4.039 22 N -0.919 5.919 23 Si 0.948 3.052 24 H -0.292 1.292 25 H -0.287 1.287 26 H -0.275 1.275 27 C 0.156 3.844 28 C -0.137 4.137 29 H 0.100 0.900 30 H 0.101 0.899 31 H 0.101 0.899 32 H 0.287 0.713 33 H 0.423 0.577 34 H 0.421 0.579 35 H 0.143 0.857 36 H 0.089 0.911 37 H 0.084 0.916 38 H 0.024 0.976 39 H 0.063 0.937 40 H 0.058 0.942 41 H 0.030 0.970 42 H 0.251 0.749 43 H 0.025 0.975 44 H 0.053 0.947 45 H 0.027 0.973 46 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.011 19.439 3.825 31.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 N -0.331 5.331 3 C 0.362 3.638 4 O -0.478 6.478 5 C -0.266 4.266 6 C 0.005 3.995 7 O -0.027 6.027 8 C -0.140 4.140 9 C 0.394 3.606 10 N -0.379 5.379 11 O -0.448 6.448 12 C -0.111 4.111 13 C 0.054 3.946 14 H 0.069 0.931 15 C -0.139 4.139 16 C -0.166 4.166 17 C 0.031 3.969 18 N -0.323 5.323 19 C -0.389 4.389 20 H 0.066 0.934 21 C -0.235 4.235 22 N -0.564 5.564 23 Si 0.777 3.223 24 H -0.219 1.219 25 H -0.214 1.214 26 H -0.200 1.200 27 C 0.028 3.972 28 C -0.178 4.178 29 H 0.118 0.882 30 H 0.119 0.881 31 H 0.119 0.881 32 H 0.302 0.698 33 H 0.255 0.745 34 H 0.254 0.746 35 H 0.161 0.839 36 H 0.107 0.893 37 H 0.102 0.898 38 H 0.043 0.957 39 H 0.081 0.919 40 H 0.077 0.923 41 H 0.049 0.951 42 H 0.060 0.940 43 H 0.043 0.957 44 H 0.071 0.929 45 H 0.046 0.954 46 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -22.865 19.633 3.727 30.367 hybrid contribution 1.914 -0.117 -0.456 1.971 sum -20.951 19.516 3.272 28.819 Atomic orbital electron populations 1.22818 0.77158 1.06105 1.04404 1.48042 1.08725 1.04569 1.71726 1.17805 0.86221 0.83785 0.75983 1.90806 1.16595 1.87702 1.52679 1.20534 0.95979 0.93206 1.16886 1.27206 0.95611 0.83436 0.93247 1.83980 1.33323 1.18005 1.67417 1.21588 0.85060 0.92576 1.14764 1.16522 0.84652 0.83178 0.76213 1.43452 1.10628 1.11432 1.72348 1.90947 1.29967 1.72213 1.51717 1.21863 1.00350 0.91142 0.97760 1.21029 0.95796 0.81771 0.96017 0.93054 1.21272 0.97403 0.99071 0.96159 1.20849 0.97378 0.98462 0.99922 1.20173 1.00446 0.93636 0.82608 1.44130 1.04357 1.81246 1.02525 1.19214 0.94554 1.16905 1.08209 0.93435 1.25559 1.01994 0.95119 1.00853 1.70135 1.32680 1.15668 1.37912 0.85550 0.81942 0.76751 0.78051 1.21890 1.21361 1.20049 1.20414 0.88445 0.92609 0.95753 1.23169 1.01558 0.97475 0.95590 0.88205 0.88149 0.88099 0.69847 0.74495 0.74556 0.83925 0.89286 0.89776 0.95679 0.91892 0.92325 0.95133 0.93981 0.95654 0.92888 0.95438 0.88196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.34 7.88 127.77 1.01 1.35 16 2 N -0.60 -14.84 2.63 -827.79 -2.18 -17.01 16 3 C 0.57 17.89 7.66 86.69 0.66 18.55 16 4 O -0.60 -26.35 16.28 -4.05 -0.07 -26.42 16 5 C -0.26 -5.93 5.99 -20.08 -0.12 -6.05 16 6 C 0.08 0.82 10.07 67.72 0.68 1.50 16 7 O -0.13 -1.52 10.33 -0.75 -0.01 -1.53 16 8 C -0.09 -1.67 7.09 24.00 0.17 -1.50 16 9 C 0.61 11.42 8.06 86.48 0.70 12.12 16 10 N -0.81 -6.23 8.87 -176.33 -1.56 -7.79 16 11 O -0.57 -16.07 17.68 -4.30 -0.08 -16.14 16 12 C -0.09 -2.29 10.42 22.63 0.24 -2.06 16 13 C 0.16 5.14 2.28 44.74 0.10 5.24 16 14 H 0.05 2.33 5.58 -2.39 -0.01 2.31 16 15 C -0.10 -2.91 4.90 29.51 0.14 -2.76 16 16 C -0.13 -4.85 5.20 28.36 0.15 -4.71 16 17 C 0.16 7.17 5.37 83.58 0.45 7.62 16 18 N -0.60 -29.73 2.56 -707.82 -1.81 -31.54 16 19 C -0.26 -14.71 9.53 84.04 0.80 -13.91 16 20 H 0.05 2.79 7.91 -2.91 -0.02 2.76 16 21 C -0.04 -2.22 4.89 84.86 0.42 -1.81 16 22 N -0.92 -54.40 11.35 21.65 0.25 -54.16 16 23 Si 0.95 47.22 29.60 68.60 2.03 49.25 16 24 H -0.29 -14.63 7.11 99.48 0.71 -13.93 16 25 H -0.29 -14.00 7.11 99.48 0.71 -13.29 16 26 H -0.28 -13.47 7.11 99.48 0.71 -12.76 16 27 C 0.16 6.16 5.18 87.60 0.45 6.61 16 28 C -0.14 -4.43 5.95 31.92 0.19 -4.24 16 29 H 0.10 0.31 7.42 -2.39 -0.02 0.29 16 30 H 0.10 0.46 5.27 -2.39 -0.01 0.45 16 31 H 0.10 0.82 6.41 -2.38 -0.02 0.81 16 32 H 0.29 -0.04 4.43 -2.91 -0.01 -0.05 16 33 H 0.42 0.65 8.57 -92.71 -0.79 -0.14 16 34 H 0.42 1.92 8.93 -92.70 -0.83 1.09 16 35 H 0.14 4.36 8.06 -2.91 -0.02 4.33 16 36 H 0.09 2.27 6.28 -2.39 -0.01 2.25 16 37 H 0.08 1.97 7.91 -2.39 -0.02 1.95 16 38 H 0.02 1.12 6.94 -2.38 -0.02 1.11 16 39 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 40 H 0.06 3.19 5.72 -2.39 -0.01 3.17 16 41 H 0.03 1.34 8.12 -2.38 -0.02 1.32 16 42 H 0.25 14.38 8.31 -92.71 -0.77 13.61 16 43 H 0.03 1.06 8.00 -2.39 -0.02 1.04 16 44 H 0.05 1.83 6.88 -2.39 -0.02 1.81 16 45 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 46 H 0.10 2.29 6.28 -2.39 -0.01 2.28 16 Total: -1.00 -87.89 364.39 2.05 -85.84 By element: Atomic # 1 Polarization: 4.10 SS G_CDS: -0.56 Total: 3.53 kcal Atomic # 6 Polarization: 9.94 SS G_CDS: 6.04 Total: 15.98 kcal Atomic # 7 Polarization: -105.20 SS G_CDS: -5.30 Total: -110.51 kcal Atomic # 8 Polarization: -43.94 SS G_CDS: -0.15 Total: -44.09 kcal Atomic # 14 Polarization: 47.22 SS G_CDS: 2.03 Total: 49.25 kcal Total: -87.89 2.05 -85.84 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000948647659.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.157 kcal (2) G-P(sol) polarization free energy of solvation -87.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds