Wall clock time and date at job start Tue Mar 31 2020 18:48:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.34775 * 119.99628 * 2 1 4 4 O 1.21677 * 119.99672 * 175.26673 * 3 2 1 5 5 C 1.46775 * 120.00456 * 355.27213 * 3 2 1 6 6 C 1.36057 * 125.65404 * 186.09144 * 5 3 2 7 7 C 1.41726 * 106.62303 * 179.97438 * 6 5 3 8 8 C 1.47490 * 126.77673 * 179.97438 * 7 6 5 9 9 N 1.34774 * 120.00372 * 179.97438 * 8 7 6 10 10 O 1.21601 * 119.99304 * 0.02562 * 8 7 6 11 11 C 1.37810 * 106.45568 * 359.97438 * 7 6 5 12 12 O 1.33505 * 108.33973 * 359.73451 * 11 7 6 13 13 C 1.46500 * 119.99794 * 179.97438 * 2 1 3 14 14 H 1.09000 * 108.44228 * 182.31419 * 13 2 1 15 15 C 1.52574 * 108.51068 * 64.77217 * 13 2 1 16 16 C 1.50878 * 109.35904 * 153.72899 * 15 13 2 17 17 C 1.54298 * 110.23080 * 91.79660 * 16 15 13 18 18 N 1.47599 * 111.94758 * 319.70085 * 17 16 15 19 19 C 1.36939 * 118.64384 * 137.77860 * 18 17 16 20 20 H 1.07999 * 119.99856 * 207.65864 * 19 18 17 21 21 C 1.38810 * 119.99688 * 27.65812 * 19 18 17 22 22 N 1.31610 * 120.00653 * 21.91995 * 21 19 18 23 23 Si 1.86806 * 119.99568 * 201.91820 * 21 19 18 24 24 H 1.48504 * 109.46900 * 94.99262 * 23 21 19 25 25 H 1.48494 * 109.47348 * 214.99130 * 23 21 19 26 26 H 1.48494 * 109.47392 * 334.99680 * 23 21 19 27 27 C 1.44577 * 122.71094 * 317.50215 * 18 17 16 28 28 C 1.47093 * 108.51469 * 300.00647 * 13 2 1 29 29 H 1.08997 * 109.47545 * 275.11345 * 1 2 3 30 30 H 1.09005 * 109.46941 * 35.11715 * 1 2 3 31 31 H 1.09004 * 109.47106 * 155.10838 * 1 2 3 32 32 H 1.07995 * 126.68850 * 359.96009 * 6 5 3 33 33 H 0.96997 * 119.99787 * 0.02562 * 9 8 7 34 34 H 0.97001 * 119.99845 * 180.02562 * 9 8 7 35 35 H 1.07999 * 125.83522 * 180.02562 * 11 7 6 36 36 H 1.09001 * 109.48681 * 273.69768 * 15 13 2 37 37 H 1.09008 * 109.48696 * 33.74064 * 15 13 2 38 38 H 1.08998 * 109.37019 * 212.07634 * 16 15 13 39 39 H 1.09004 * 109.36735 * 331.82314 * 16 15 13 40 40 H 1.09002 * 109.13689 * 199.01380 * 17 16 15 41 41 H 1.08997 * 108.95487 * 80.27142 * 17 16 15 42 42 H 0.97002 * 120.00351 * 179.97438 * 22 21 19 43 43 H 1.09004 * 109.45236 * 211.02224 * 27 18 17 44 44 H 1.09005 * 109.45500 * 330.96657 * 27 18 17 45 45 H 1.08992 * 109.32944 * 63.79179 * 28 13 2 46 46 H 1.08997 * 109.32340 * 304.31389 * 28 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3525 1.1690 0.0870 5 6 1.4088 2.4362 -0.1048 6 6 1.9730 3.6676 -0.2330 7 6 0.9058 4.5977 -0.2993 8 6 1.0177 6.0616 -0.4397 9 7 -0.0946 6.8209 -0.4895 10 8 2.1138 6.5834 -0.5116 11 6 -0.2574 3.8645 -0.2066 12 8 0.0670 2.5741 -0.0972 13 6 2.1975 -1.2688 0.0006 14 1 3.2647 -1.0508 0.0422 15 6 1.9056 -1.9972 -1.3079 16 6 3.0583 -2.9128 -1.6385 17 6 2.8067 -4.3192 -1.0557 18 7 2.2086 -4.2587 0.2924 19 6 1.1932 -5.1247 0.5994 20 1 0.4556 -4.8513 1.3394 21 6 1.1121 -6.3539 -0.0404 22 7 2.1839 -6.8795 -0.5945 23 14 -0.5187 -7.2620 -0.1150 24 1 -1.2015 -6.9487 -1.3960 25 1 -0.2753 -8.7244 -0.0286 26 1 -1.3756 -6.8349 1.0200 27 6 2.6545 -3.3270 1.3039 28 6 1.8270 -2.0215 1.2088 29 1 -0.3634 0.0916 1.0235 30 1 -0.3633 0.8407 -0.5912 31 1 -0.3633 -0.9322 -0.4326 32 1 3.0285 3.8924 -0.2756 33 1 -0.9689 6.4047 -0.4326 34 1 -0.0209 7.7837 -0.5823 35 1 -1.2603 4.2648 -0.2246 36 1 0.9935 -2.5844 -1.2015 37 1 1.7780 -1.2688 -2.1089 38 1 3.1647 -2.9838 -2.7209 39 1 3.9757 -2.5080 -1.2109 40 1 3.7530 -4.8571 -0.9992 41 1 2.1322 -4.8615 -1.7182 42 1 2.1272 -7.7386 -1.0413 43 1 2.5204 -3.7706 2.2905 44 1 3.7093 -3.0998 1.1486 45 1 0.7662 -2.2688 1.1685 46 1 2.0186 -1.4078 2.0890 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000948765984.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:48:00 Heat of formation + Delta-G solvation = -24.734220 kcal Electronic energy + Delta-G solvation = -29410.402679 eV Core-core repulsion = 25302.876389 eV Total energy + Delta-G solvation = -4107.526290 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -43.21688 -40.05543 -39.49412 -37.74546 -35.51935 -34.31211 -33.36101 -32.94575 -31.69313 -30.83696 -29.77921 -26.99210 -26.12089 -24.67470 -24.39051 -23.60303 -22.52992 -21.20420 -20.08906 -19.48247 -19.27973 -18.40951 -17.24819 -17.08772 -16.90933 -16.70121 -16.24434 -15.96923 -15.14955 -15.11341 -14.78685 -14.39330 -14.09031 -13.92741 -13.69084 -13.52815 -13.39019 -13.10375 -13.04928 -12.83741 -12.45670 -12.12991 -11.90579 -11.42829 -11.28096 -10.85424 -10.68830 -10.60984 -10.53805 -10.42905 -10.33542 -10.20000 -10.19768 -10.00645 -9.82242 -9.76673 -9.58490 -9.17973 -8.56523 -8.40548 -6.68548 -5.81305 -3.23437 0.62222 1.24729 2.21033 2.84743 2.88107 3.10040 3.14465 3.34833 3.43096 3.44109 4.04555 4.18635 4.46968 4.48660 4.94013 5.09546 5.18600 5.22288 5.28542 5.29828 5.41670 5.50117 5.61327 5.72606 5.77839 5.85733 5.98344 5.98955 6.12550 6.24430 6.28284 6.35208 6.42241 6.50046 6.60955 6.70867 6.76804 6.81256 6.82481 6.86912 6.95509 7.35023 7.38687 7.62658 7.79403 7.82331 8.01031 8.45143 9.21114 9.88830 10.35844 11.25728 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.026406 B = 0.002447 C = 0.002336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.122202 B =11438.909809 C =11985.135239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.598 5.598 3 C 0.593 3.407 4 O -0.519 6.519 5 C -0.064 4.064 6 C -0.075 4.075 7 C -0.242 4.242 8 C 0.593 3.407 9 N -0.852 5.852 10 O -0.534 6.534 11 C 0.032 3.968 12 O -0.141 6.141 13 C 0.155 3.845 14 H 0.090 0.910 15 C -0.110 4.110 16 C -0.140 4.140 17 C 0.177 3.823 18 N -0.588 5.588 19 C -0.264 4.264 20 H 0.065 0.935 21 C 0.009 3.991 22 N -0.895 5.895 23 Si 0.894 3.106 24 H -0.288 1.288 25 H -0.292 1.292 26 H -0.279 1.279 27 C 0.163 3.837 28 C -0.153 4.153 29 H 0.058 0.942 30 H 0.077 0.923 31 H 0.083 0.917 32 H 0.170 0.830 33 H 0.399 0.601 34 H 0.407 0.593 35 H 0.217 0.783 36 H 0.079 0.921 37 H 0.048 0.952 38 H 0.056 0.944 39 H 0.049 0.951 40 H 0.027 0.973 41 H 0.065 0.935 42 H 0.253 0.747 43 H 0.051 0.949 44 H 0.035 0.965 45 H 0.066 0.934 46 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.156 22.630 -0.688 24.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.329 5.329 3 C 0.380 3.620 4 O -0.398 6.398 5 C -0.116 4.116 6 C -0.096 4.096 7 C -0.247 4.247 8 C 0.379 3.621 9 N -0.416 5.416 10 O -0.411 6.411 11 C -0.042 4.042 12 O -0.035 6.035 13 C 0.054 3.946 14 H 0.109 0.891 15 C -0.148 4.148 16 C -0.180 4.180 17 C 0.052 3.948 18 N -0.309 5.309 19 C -0.393 4.393 20 H 0.082 0.918 21 C -0.191 4.191 22 N -0.538 5.538 23 Si 0.724 3.276 24 H -0.215 1.215 25 H -0.219 1.219 26 H -0.204 1.204 27 C 0.034 3.966 28 C -0.195 4.195 29 H 0.077 0.923 30 H 0.095 0.905 31 H 0.102 0.898 32 H 0.188 0.812 33 H 0.227 0.773 34 H 0.239 0.761 35 H 0.233 0.767 36 H 0.097 0.903 37 H 0.067 0.933 38 H 0.075 0.925 39 H 0.068 0.932 40 H 0.045 0.955 41 H 0.084 0.916 42 H 0.063 0.937 43 H 0.070 0.930 44 H 0.053 0.947 45 H 0.084 0.916 46 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -7.850 22.306 -0.735 23.658 hybrid contribution -1.524 -0.078 -0.154 1.534 sum -9.374 22.227 -0.889 24.140 Atomic orbital electron populations 1.22007 0.79288 1.03591 1.02194 1.48281 1.07553 1.06113 1.70965 1.16706 0.86238 0.81238 0.77829 1.90885 1.12074 1.85673 1.51122 1.22223 0.79664 0.96647 1.13030 1.21837 1.01081 0.89135 0.97540 1.20601 0.93880 0.94580 1.15630 1.17259 0.84264 0.85238 0.75326 1.43653 1.08464 1.11458 1.78011 1.90866 1.26620 1.74062 1.49504 1.25116 0.99552 0.81141 0.98344 1.84270 1.24047 1.26469 1.68708 1.20313 0.97153 0.80623 0.96478 0.89150 1.21290 1.01172 0.97713 0.94654 1.22015 0.97056 0.98935 0.99983 1.21038 0.97741 0.90301 0.85686 1.43665 1.41011 1.38502 1.07717 1.19143 1.02311 0.95068 1.22807 0.91777 1.25008 0.96688 0.95881 1.01499 1.70123 1.26103 1.17541 1.40049 0.86408 0.84322 0.78943 0.77926 1.21526 1.21888 1.20386 1.20567 0.94528 0.88394 0.93159 1.21864 1.02917 0.99257 0.95421 0.92344 0.90456 0.89798 0.81236 0.77263 0.76124 0.76697 0.90252 0.93339 0.92533 0.93188 0.95461 0.91613 0.93673 0.93045 0.94702 0.91577 0.93030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.81 8.67 59.85 0.52 1.33 16 2 N -0.60 -8.60 2.59 -178.98 -0.46 -9.07 16 3 C 0.59 9.01 7.64 -12.81 -0.10 8.91 16 4 O -0.52 -9.55 16.16 5.21 0.08 -9.46 16 5 C -0.06 -0.79 6.76 -36.92 -0.25 -1.04 16 6 C -0.07 -0.90 10.42 -39.03 -0.41 -1.31 16 7 C -0.24 -2.22 6.16 -104.95 -0.65 -2.86 16 8 C 0.59 5.56 8.09 -12.49 -0.10 5.46 16 9 N -0.85 -3.56 8.86 30.45 0.27 -3.29 16 10 O -0.53 -7.51 17.77 5.28 0.09 -7.42 16 11 C 0.03 0.19 11.64 30.58 0.36 0.55 16 12 O -0.14 -1.27 7.13 6.18 0.04 -1.23 16 13 C 0.15 2.56 1.95 -70.98 -0.14 2.42 16 14 H 0.09 1.66 6.03 -51.93 -0.31 1.34 16 15 C -0.11 -1.87 4.37 -28.01 -0.12 -1.99 16 16 C -0.14 -2.59 5.71 -27.12 -0.15 -2.75 16 17 C 0.18 4.06 4.75 -2.76 -0.01 4.05 16 18 N -0.59 -13.86 2.25 -171.87 -0.39 -14.25 16 19 C -0.26 -6.86 9.38 -15.06 -0.14 -7.00 16 20 H 0.06 1.65 7.92 -52.49 -0.42 1.24 16 21 C 0.01 0.24 4.68 -17.43 -0.08 0.16 16 22 N -0.90 -25.36 11.54 55.49 0.64 -24.72 16 23 Si 0.89 20.98 29.61 -169.99 -5.03 15.94 16 24 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 25 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 26 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 27 C 0.16 3.30 5.65 -4.09 -0.02 3.28 16 28 C -0.15 -2.64 4.88 -28.58 -0.14 -2.78 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.08 0.74 5.20 -51.93 -0.27 0.47 16 31 H 0.08 0.98 7.22 -51.93 -0.37 0.60 16 32 H 0.17 2.17 8.06 -52.49 -0.42 1.75 16 33 H 0.40 0.24 7.77 -40.82 -0.32 -0.07 16 34 H 0.41 1.29 8.93 -40.82 -0.36 0.92 16 35 H 0.22 0.08 7.46 -52.49 -0.39 -0.31 16 36 H 0.08 1.48 7.21 -51.93 -0.37 1.11 16 37 H 0.05 0.76 8.05 -51.92 -0.42 0.35 16 38 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 39 H 0.05 0.91 7.31 -51.93 -0.38 0.53 16 40 H 0.03 0.69 8.04 -51.93 -0.42 0.27 16 41 H 0.07 1.66 6.61 -51.93 -0.34 1.32 16 42 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16 43 H 0.05 1.06 7.99 -51.93 -0.41 0.65 16 44 H 0.03 0.69 8.06 -51.93 -0.42 0.27 16 45 H 0.07 1.17 7.59 -51.93 -0.39 0.78 16 46 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 370.17 15.07 5.58 5.58 Total: -1.00 -34.39 370.17 -7.05 -41.44 By element: Atomic # 1 Polarization: 6.48 SS G_CDS: -6.43 Total: 0.05 kcal Atomic # 6 Polarization: 7.87 SS G_CDS: -1.44 Total: 6.43 kcal Atomic # 7 Polarization: -51.38 SS G_CDS: 0.06 Total: -51.32 kcal Atomic # 8 Polarization: -18.33 SS G_CDS: 0.22 Total: -18.11 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.03 Total: 15.94 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -34.39 -7.05 -41.44 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000948765984.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.702 kcal (2) G-P(sol) polarization free energy of solvation -34.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds