Wall clock time and date at job start Tue Mar 31 2020 18:27:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.34780 * 119.99502 * 2 1 4 4 O 1.21683 * 119.99704 * 183.30946 * 3 2 1 5 5 C 1.46774 * 120.00210 * 3.30444 * 3 2 1 6 6 C 1.36055 * 125.65431 * 173.22449 * 5 3 2 7 7 C 1.41722 * 106.62565 * 180.02562 * 6 5 3 8 8 C 1.47491 * 126.77634 * 180.02562 * 7 6 5 9 9 N 1.34775 * 120.00201 * 180.02562 * 8 7 6 10 10 O 1.21597 * 119.99768 * 359.97438 * 8 7 6 11 11 C 1.37806 * 106.45394 * 0.26320 * 7 6 5 12 12 O 1.33501 * 108.34383 * 359.57195 * 11 7 6 13 13 C 1.46499 * 120.00010 * 179.97438 * 2 1 3 14 14 C 1.52995 * 109.47035 * 60.00799 * 13 2 1 15 15 C 1.53001 * 109.47251 * 179.97438 * 14 13 2 16 16 C 1.52998 * 109.46860 * 59.99686 * 15 14 13 17 17 N 1.46505 * 109.47051 * 180.02562 * 16 15 14 18 18 C 1.36934 * 119.99762 * 274.99947 * 17 16 15 19 19 H 1.08009 * 120.00305 * 359.97438 * 18 17 16 20 20 C 1.38810 * 120.00017 * 179.97438 * 18 17 16 21 21 N 1.31615 * 120.00134 * 0.02562 * 20 18 17 22 22 Si 1.86809 * 120.00143 * 179.97438 * 20 18 17 23 23 H 1.48494 * 109.46843 * 0.02562 * 22 20 18 24 24 H 1.48502 * 109.46670 * 120.00088 * 22 20 18 25 25 H 1.48494 * 109.47315 * 239.99982 * 22 20 18 26 26 C 1.52997 * 109.47335 * 299.99821 * 16 15 14 27 27 C 1.52996 * 109.47478 * 300.00119 * 13 2 1 28 28 H 1.08995 * 109.46780 * 84.01668 * 1 2 3 29 29 H 1.09003 * 109.46719 * 204.01084 * 1 2 3 30 30 H 1.09002 * 109.47553 * 324.01165 * 1 2 3 31 31 H 1.08000 * 126.68630 * 0.07704 * 6 5 3 32 32 H 0.97006 * 119.99493 * 179.97438 * 9 8 7 33 33 H 0.96998 * 120.00460 * 359.71455 * 9 8 7 34 34 H 1.08002 * 125.83371 * 179.71143 * 11 7 6 35 35 H 1.09007 * 109.46733 * 180.02562 * 13 2 1 36 36 H 1.09007 * 109.47086 * 299.99448 * 14 13 2 37 37 H 1.09002 * 109.47538 * 59.99386 * 14 13 2 38 38 H 1.08997 * 109.46740 * 299.99902 * 15 14 13 39 39 H 1.09002 * 109.47150 * 179.97438 * 15 14 13 40 40 H 1.08998 * 109.47777 * 60.00406 * 16 15 14 41 41 H 0.96994 * 120.00345 * 94.99655 * 17 16 15 42 42 H 0.96999 * 120.00200 * 180.02562 * 21 20 18 43 43 H 1.08997 * 109.47529 * 300.00558 * 26 16 15 44 44 H 1.09002 * 109.47428 * 180.02562 * 26 16 15 45 45 H 1.09000 * 109.47139 * 300.00428 * 27 13 2 46 46 H 1.09004 * 109.46742 * 59.99897 * 27 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1389 1.1673 0.0000 4 8 3.3542 1.1682 -0.0608 5 6 1.4067 2.4373 0.0733 6 6 1.9676 3.6692 0.2114 7 6 0.8995 4.6003 0.2377 8 6 1.0082 6.0651 0.3722 9 7 -0.1047 6.8253 0.3817 10 8 2.1017 6.5866 0.4755 11 6 -0.2609 3.8667 0.1182 12 8 0.0663 2.5765 0.0155 13 6 2.1976 -1.2687 0.0006 14 6 1.8281 -2.0714 -1.2484 15 6 2.5936 -3.3962 -1.2482 16 6 2.2244 -4.1982 0.0014 17 7 2.9578 -5.4665 0.0019 18 6 2.4596 -6.5457 -0.6779 19 1 1.5258 -6.4622 -1.2141 20 6 3.1547 -7.7473 -0.6778 21 7 4.2924 -7.8494 -0.0240 22 14 2.4748 -9.2198 -1.6046 23 1 1.1911 -8.8476 -2.2518 24 1 3.4479 -9.6432 -2.6434 25 1 2.2452 -10.3389 -0.6559 26 6 2.5940 -3.3955 1.2503 27 6 1.8280 -2.0705 1.2501 28 1 -0.3633 0.1071 -1.0220 29 1 -0.3633 -0.9388 0.4182 30 1 -0.3634 0.8315 0.6039 31 1 3.0214 3.8937 0.2857 32 1 -0.0331 7.7887 0.4705 33 1 -0.9768 6.4096 0.2958 34 1 -1.2638 4.2673 0.1072 35 1 3.2693 -1.0695 0.0009 36 1 0.7564 -2.2707 -1.2484 37 1 2.0914 -1.5002 -2.1386 38 1 3.6651 -3.1966 -1.2484 39 1 2.3300 -3.9683 -2.1377 40 1 1.1529 -4.3979 0.0017 41 1 3.7962 -5.5417 0.4838 42 1 4.7783 -8.6889 -0.0242 43 1 3.6655 -3.1959 1.2501 44 1 2.3314 -3.9671 2.1405 45 1 2.0912 -1.4986 2.1398 46 1 0.7563 -2.2697 1.2501 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000963903028.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:59 Heat of formation + Delta-G solvation = -49.022313 kcal Electronic energy + Delta-G solvation = -28515.581665 eV Core-core repulsion = 24407.002164 eV Total energy + Delta-G solvation = -4108.579501 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.34585 -40.19531 -39.58154 -38.05205 -35.65351 -34.39550 -33.57227 -33.32598 -31.17135 -30.44114 -30.20193 -27.84927 -26.95586 -24.56382 -24.24959 -23.04712 -22.28609 -21.39987 -20.82023 -19.89713 -19.35250 -18.51483 -17.37436 -17.23078 -17.06756 -16.91661 -16.45391 -16.29212 -15.29583 -15.21178 -14.89579 -14.54240 -14.18605 -13.91233 -13.77655 -13.72075 -13.56295 -13.31116 -13.22189 -12.94330 -12.60649 -12.27491 -12.08639 -11.82562 -11.45873 -10.91590 -10.77757 -10.76690 -10.71089 -10.69714 -10.54402 -10.33442 -10.27365 -10.20115 -10.12216 -9.73164 -9.59394 -9.31141 -8.88598 -8.73194 -6.94235 -5.75522 -3.04138 0.49026 1.12535 2.06111 2.68038 2.73559 2.95275 3.00215 3.43229 3.48557 3.51059 3.91800 4.05182 4.34064 4.59135 4.76891 4.92906 4.94247 4.97809 5.02899 5.14916 5.26076 5.30185 5.49528 5.54420 5.54925 5.62681 5.69688 5.75506 5.81243 5.86070 6.01479 6.11131 6.20966 6.22776 6.25715 6.26599 6.41407 6.55493 6.60863 6.68849 6.74360 6.97214 7.09034 7.14023 7.70983 7.71574 7.80011 8.43178 9.54231 10.13017 10.47427 11.47226 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.039864 B = 0.001917 C = 0.001883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 702.216837 B =14602.497893 C =14865.058366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.597 5.597 3 C 0.597 3.403 4 O -0.514 6.514 5 C -0.068 4.068 6 C -0.071 4.071 7 C -0.241 4.241 8 C 0.593 3.407 9 N -0.851 5.851 10 O -0.533 6.533 11 C 0.035 3.965 12 O -0.143 6.143 13 C 0.139 3.861 14 C -0.121 4.121 15 C -0.133 4.133 16 C 0.178 3.822 17 N -0.725 5.725 18 C -0.237 4.237 19 H 0.070 0.930 20 C -0.015 4.015 21 N -0.932 5.932 22 Si 0.905 3.095 23 H -0.281 1.281 24 H -0.292 1.292 25 H -0.292 1.292 26 C -0.121 4.121 27 C -0.119 4.119 28 H 0.060 0.940 29 H 0.083 0.917 30 H 0.079 0.921 31 H 0.171 0.829 32 H 0.408 0.592 33 H 0.399 0.601 34 H 0.218 0.782 35 H 0.104 0.896 36 H 0.061 0.939 37 H 0.057 0.943 38 H 0.058 0.942 39 H 0.065 0.935 40 H 0.046 0.954 41 H 0.384 0.616 42 H 0.254 0.746 43 H 0.062 0.938 44 H 0.068 0.932 45 H 0.061 0.939 46 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.660 27.755 1.650 31.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.328 5.328 3 C 0.384 3.616 4 O -0.392 6.392 5 C -0.119 4.119 6 C -0.092 4.092 7 C -0.246 4.246 8 C 0.378 3.622 9 N -0.416 5.416 10 O -0.409 6.409 11 C -0.039 4.039 12 O -0.036 6.036 13 C 0.037 3.963 14 C -0.160 4.160 15 C -0.174 4.174 16 C 0.068 3.932 17 N -0.366 5.366 18 C -0.368 4.368 19 H 0.088 0.912 20 C -0.211 4.211 21 N -0.581 5.581 22 Si 0.736 3.264 23 H -0.206 1.206 24 H -0.219 1.219 25 H -0.219 1.219 26 C -0.160 4.160 27 C -0.158 4.158 28 H 0.079 0.921 29 H 0.102 0.898 30 H 0.097 0.903 31 H 0.189 0.811 32 H 0.239 0.761 33 H 0.227 0.773 34 H 0.234 0.766 35 H 0.122 0.878 36 H 0.080 0.920 37 H 0.076 0.924 38 H 0.077 0.923 39 H 0.084 0.916 40 H 0.064 0.936 41 H 0.217 0.783 42 H 0.064 0.936 43 H 0.081 0.919 44 H 0.086 0.914 45 H 0.079 0.921 46 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -14.507 27.466 1.550 31.100 hybrid contribution -0.648 -0.442 -0.437 0.898 sum -15.154 27.024 1.113 31.003 Atomic orbital electron populations 1.22024 0.79121 1.03659 1.02433 1.47918 1.07485 1.05823 1.71614 1.16668 0.86221 0.81195 0.77546 1.90914 1.11916 1.85689 1.50652 1.22096 0.79810 0.96476 1.13545 1.21862 1.01147 0.89087 0.97132 1.20616 0.93879 0.94627 1.15481 1.17250 0.84267 0.85222 0.75430 1.43654 1.08595 1.11439 1.77868 1.90873 1.26787 1.74083 1.49175 1.25114 0.99596 0.80989 0.98168 1.84233 1.24017 1.26675 1.68716 1.21388 0.97919 0.80858 0.96107 1.21865 1.00861 0.97052 0.96196 1.22247 0.99703 0.93724 1.01699 1.20228 0.95731 0.86256 0.91011 1.42440 1.26029 1.06557 1.61536 1.19281 1.04062 0.89464 1.24010 0.91175 1.24745 0.97297 0.97991 1.01042 1.69669 1.16076 1.25713 1.46620 0.86145 0.77937 0.83165 0.79116 1.20608 1.21926 1.21926 1.21781 1.00115 0.94291 0.99840 1.21838 1.00861 0.96551 0.96567 0.92143 0.89847 0.90309 0.81149 0.76058 0.77265 0.76586 0.87793 0.92002 0.92436 0.92344 0.91586 0.93615 0.78266 0.93589 0.91897 0.91375 0.92050 0.91680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.57 8.64 59.85 0.52 1.09 16 2 N -0.60 -6.89 2.76 -175.44 -0.48 -7.37 16 3 C 0.60 7.79 7.64 -12.81 -0.10 7.69 16 4 O -0.51 -8.51 16.19 5.20 0.08 -8.43 16 5 C -0.07 -0.71 6.74 -36.92 -0.25 -0.96 16 6 C -0.07 -0.75 10.42 -39.04 -0.41 -1.16 16 7 C -0.24 -1.89 6.16 -104.95 -0.65 -2.53 16 8 C 0.59 4.92 8.09 -12.49 -0.10 4.82 16 9 N -0.85 -2.71 8.86 30.45 0.27 -2.44 16 10 O -0.53 -7.00 17.77 5.28 0.09 -6.90 16 11 C 0.03 0.15 11.64 30.57 0.36 0.51 16 12 O -0.14 -1.02 7.19 6.17 0.04 -0.97 16 13 C 0.14 1.84 2.51 -67.94 -0.17 1.67 16 14 C -0.12 -1.65 5.20 -26.73 -0.14 -1.79 16 15 C -0.13 -2.31 5.50 -26.73 -0.15 -2.45 16 16 C 0.18 3.38 2.77 -67.93 -0.19 3.20 16 17 N -0.73 -17.90 5.12 -53.42 -0.27 -18.17 16 18 C -0.24 -6.49 9.93 -15.06 -0.15 -6.64 16 19 H 0.07 1.86 7.83 -52.48 -0.41 1.45 16 20 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 21 N -0.93 -28.16 13.06 55.49 0.72 -27.44 16 22 Si 0.90 22.29 29.55 -169.99 -5.02 17.27 16 23 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 24 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 25 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 26 C -0.12 -1.94 5.39 -26.71 -0.14 -2.09 16 27 C -0.12 -1.53 5.20 -26.71 -0.14 -1.67 16 28 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.08 0.63 6.44 -51.93 -0.33 0.29 16 30 H 0.08 0.54 5.39 -51.93 -0.28 0.26 16 31 H 0.17 1.96 8.06 -52.49 -0.42 1.53 16 32 H 0.41 0.93 8.93 -40.82 -0.36 0.57 16 33 H 0.40 -0.18 7.78 -40.82 -0.32 -0.50 16 34 H 0.22 -0.24 7.46 -52.49 -0.39 -0.63 16 35 H 0.10 1.61 6.90 -51.93 -0.36 1.25 16 36 H 0.06 0.77 7.67 -51.93 -0.40 0.37 16 37 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 39 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 40 H 0.05 0.88 8.08 -51.93 -0.42 0.46 16 41 H 0.38 10.15 7.80 -40.82 -0.32 9.83 16 42 H 0.25 7.44 8.31 -40.82 -0.34 7.10 16 43 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 44 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 45 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 46 H 0.06 0.75 6.67 -51.93 -0.35 0.40 16 LS Contribution 377.49 15.07 5.69 5.69 Total: -1.00 -36.54 377.49 -7.13 -43.67 By element: Atomic # 1 Polarization: 12.39 SS G_CDS: -6.46 Total: 5.93 kcal Atomic # 6 Polarization: 0.97 SS G_CDS: -1.80 Total: -0.84 kcal Atomic # 7 Polarization: -55.66 SS G_CDS: 0.24 Total: -55.42 kcal Atomic # 8 Polarization: -16.53 SS G_CDS: 0.22 Total: -16.31 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.27 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -36.54 -7.13 -43.67 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000963903028.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.348 kcal (2) G-P(sol) polarization free energy of solvation -36.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.674 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds