Wall clock time and date at job start Tue Mar 31 2020 18:27:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.34780 * 119.99502 * 2 1 4 4 O 1.21683 * 119.99704 * 183.30946 * 3 2 1 5 5 C 1.46774 * 120.00210 * 3.30444 * 3 2 1 6 6 C 1.36055 * 125.65431 * 173.22449 * 5 3 2 7 7 C 1.41722 * 106.62565 * 180.02562 * 6 5 3 8 8 C 1.47491 * 126.77634 * 180.02562 * 7 6 5 9 9 N 1.34775 * 120.00201 * 180.02562 * 8 7 6 10 10 O 1.21597 * 119.99768 * 359.97438 * 8 7 6 11 11 C 1.37806 * 106.45394 * 0.26320 * 7 6 5 12 12 O 1.33501 * 108.34383 * 359.57195 * 11 7 6 13 13 C 1.46499 * 120.00010 * 179.97438 * 2 1 3 14 14 C 1.52995 * 109.47035 * 60.00799 * 13 2 1 15 15 C 1.53001 * 109.47251 * 179.97438 * 14 13 2 16 16 C 1.52998 * 109.46860 * 59.99686 * 15 14 13 17 17 N 1.46505 * 109.47051 * 180.02562 * 16 15 14 18 18 C 1.36934 * 119.99762 * 274.99947 * 17 16 15 19 19 H 1.08009 * 120.00305 * 359.97438 * 18 17 16 20 20 C 1.38810 * 120.00017 * 179.97438 * 18 17 16 21 21 N 1.31615 * 120.00134 * 0.02562 * 20 18 17 22 22 Si 1.86809 * 120.00143 * 179.97438 * 20 18 17 23 23 H 1.48494 * 109.46843 * 0.02562 * 22 20 18 24 24 H 1.48502 * 109.46670 * 120.00088 * 22 20 18 25 25 H 1.48494 * 109.47315 * 239.99982 * 22 20 18 26 26 C 1.52997 * 109.47335 * 299.99821 * 16 15 14 27 27 C 1.52996 * 109.47478 * 300.00119 * 13 2 1 28 28 H 1.08995 * 109.46780 * 84.01668 * 1 2 3 29 29 H 1.09003 * 109.46719 * 204.01084 * 1 2 3 30 30 H 1.09002 * 109.47553 * 324.01165 * 1 2 3 31 31 H 1.08000 * 126.68630 * 0.07704 * 6 5 3 32 32 H 0.97006 * 119.99493 * 179.97438 * 9 8 7 33 33 H 0.96998 * 120.00460 * 359.71455 * 9 8 7 34 34 H 1.08002 * 125.83371 * 179.71143 * 11 7 6 35 35 H 1.09007 * 109.46733 * 180.02562 * 13 2 1 36 36 H 1.09007 * 109.47086 * 299.99448 * 14 13 2 37 37 H 1.09002 * 109.47538 * 59.99386 * 14 13 2 38 38 H 1.08997 * 109.46740 * 299.99902 * 15 14 13 39 39 H 1.09002 * 109.47150 * 179.97438 * 15 14 13 40 40 H 1.08998 * 109.47777 * 60.00406 * 16 15 14 41 41 H 0.96994 * 120.00345 * 94.99655 * 17 16 15 42 42 H 0.96999 * 120.00200 * 180.02562 * 21 20 18 43 43 H 1.08997 * 109.47529 * 300.00558 * 26 16 15 44 44 H 1.09002 * 109.47428 * 180.02562 * 26 16 15 45 45 H 1.09000 * 109.47139 * 300.00428 * 27 13 2 46 46 H 1.09004 * 109.46742 * 59.99897 * 27 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1389 1.1673 0.0000 4 8 3.3542 1.1682 -0.0608 5 6 1.4067 2.4373 0.0733 6 6 1.9676 3.6692 0.2114 7 6 0.8995 4.6003 0.2377 8 6 1.0082 6.0651 0.3722 9 7 -0.1047 6.8253 0.3817 10 8 2.1017 6.5866 0.4755 11 6 -0.2609 3.8667 0.1182 12 8 0.0663 2.5765 0.0155 13 6 2.1976 -1.2687 0.0006 14 6 1.8281 -2.0714 -1.2484 15 6 2.5936 -3.3962 -1.2482 16 6 2.2244 -4.1982 0.0014 17 7 2.9578 -5.4665 0.0019 18 6 2.4596 -6.5457 -0.6779 19 1 1.5258 -6.4622 -1.2141 20 6 3.1547 -7.7473 -0.6778 21 7 4.2924 -7.8494 -0.0240 22 14 2.4748 -9.2198 -1.6046 23 1 1.1911 -8.8476 -2.2518 24 1 3.4479 -9.6432 -2.6434 25 1 2.2452 -10.3389 -0.6559 26 6 2.5940 -3.3955 1.2503 27 6 1.8280 -2.0705 1.2501 28 1 -0.3633 0.1071 -1.0220 29 1 -0.3633 -0.9388 0.4182 30 1 -0.3634 0.8315 0.6039 31 1 3.0214 3.8937 0.2857 32 1 -0.0331 7.7887 0.4705 33 1 -0.9768 6.4096 0.2958 34 1 -1.2638 4.2673 0.1072 35 1 3.2693 -1.0695 0.0009 36 1 0.7564 -2.2707 -1.2484 37 1 2.0914 -1.5002 -2.1386 38 1 3.6651 -3.1966 -1.2484 39 1 2.3300 -3.9683 -2.1377 40 1 1.1529 -4.3979 0.0017 41 1 3.7962 -5.5417 0.4838 42 1 4.7783 -8.6889 -0.0242 43 1 3.6655 -3.1959 1.2501 44 1 2.3314 -3.9671 2.1405 45 1 2.0912 -1.4986 2.1398 46 1 0.7563 -2.2697 1.2501 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000963903028.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:59 Heat of formation + Delta-G solvation = -77.744480 kcal Electronic energy + Delta-G solvation = -28516.827151 eV Core-core repulsion = 24407.002164 eV Total energy + Delta-G solvation = -4109.824988 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.96464 -41.20245 -40.22469 -39.31715 -36.91322 -35.22026 -34.91302 -34.02557 -32.78938 -31.70926 -31.13636 -29.19460 -27.84163 -25.85324 -25.07855 -24.32585 -23.56958 -22.27751 -21.83554 -20.72380 -20.55603 -19.25043 -19.03051 -17.93129 -17.90005 -17.66145 -17.29559 -17.02059 -16.80262 -16.15209 -15.94862 -15.58296 -15.38351 -15.26324 -15.02122 -14.80303 -14.55422 -14.42480 -14.18240 -13.99941 -13.75972 -13.41652 -13.17195 -13.09735 -12.92085 -12.83463 -12.41262 -12.16857 -12.06439 -11.97903 -11.68248 -11.52080 -11.41680 -11.35186 -11.23386 -11.09522 -10.84566 -10.73246 -10.00511 -9.63559 -8.98032 -7.91739 -5.19974 -0.11431 0.43593 1.37449 1.48127 1.48995 1.58766 1.86898 1.95121 2.28005 2.50540 2.58035 3.37264 3.41485 3.45507 3.71867 3.82444 3.86740 3.89276 4.19626 4.22696 4.30690 4.36287 4.38710 4.43725 4.53409 4.58821 4.59885 4.68087 4.76952 4.85285 4.94293 4.96667 5.02067 5.11581 5.12158 5.23031 5.27461 5.42696 5.50955 5.56234 5.61360 5.65528 5.85481 6.21086 6.30760 6.43232 6.86387 7.29241 7.36131 8.13952 8.35974 9.32286 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.039864 B = 0.001917 C = 0.001883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 702.216837 B =14602.497893 C =14865.058366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.063 3.937 2 N -0.593 5.593 3 C 0.591 3.409 4 O -0.566 6.566 5 C -0.084 4.084 6 C -0.086 4.086 7 C -0.271 4.271 8 C 0.591 3.409 9 N -0.822 5.822 10 O -0.596 6.596 11 C 0.093 3.907 12 O -0.134 6.134 13 C 0.144 3.856 14 C -0.106 4.106 15 C -0.124 4.124 16 C 0.173 3.827 17 N -0.740 5.740 18 C -0.232 4.232 19 H 0.079 0.921 20 C -0.081 4.081 21 N -0.973 5.973 22 Si 0.971 3.029 23 H -0.263 1.263 24 H -0.298 1.298 25 H -0.295 1.295 26 C -0.114 4.114 27 C -0.106 4.106 28 H 0.074 0.926 29 H 0.095 0.905 30 H 0.096 0.904 31 H 0.144 0.856 32 H 0.415 0.585 33 H 0.421 0.579 34 H 0.284 0.716 35 H 0.074 0.926 36 H 0.086 0.914 37 H 0.059 0.941 38 H 0.038 0.962 39 H 0.049 0.951 40 H 0.053 0.947 41 H 0.370 0.630 42 H 0.249 0.751 43 H 0.048 0.952 44 H 0.065 0.935 45 H 0.070 0.930 46 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.676 29.359 1.352 35.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.322 5.322 3 C 0.380 3.620 4 O -0.448 6.448 5 C -0.135 4.135 6 C -0.108 4.108 7 C -0.275 4.275 8 C 0.377 3.623 9 N -0.387 5.387 10 O -0.478 6.478 11 C 0.020 3.980 12 O -0.027 6.027 13 C 0.041 3.959 14 C -0.145 4.145 15 C -0.165 4.165 16 C 0.065 3.935 17 N -0.379 5.379 18 C -0.364 4.364 19 H 0.097 0.903 20 C -0.273 4.273 21 N -0.624 5.624 22 Si 0.800 3.200 23 H -0.187 1.187 24 H -0.225 1.225 25 H -0.222 1.222 26 C -0.153 4.153 27 C -0.145 4.145 28 H 0.093 0.907 29 H 0.114 0.886 30 H 0.114 0.886 31 H 0.162 0.838 32 H 0.248 0.752 33 H 0.253 0.747 34 H 0.300 0.700 35 H 0.093 0.907 36 H 0.105 0.895 37 H 0.077 0.923 38 H 0.057 0.943 39 H 0.067 0.933 40 H 0.071 0.929 41 H 0.201 0.799 42 H 0.058 0.942 43 H 0.067 0.933 44 H 0.083 0.917 45 H 0.089 0.911 46 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -19.665 29.111 1.237 35.152 hybrid contribution 0.785 -0.786 -0.341 1.162 sum -18.880 28.325 0.897 34.052 Atomic orbital electron populations 1.22327 0.76453 1.05138 1.03877 1.47900 1.08954 1.04531 1.70825 1.16995 0.85874 0.82315 0.76777 1.90881 1.14241 1.86583 1.53065 1.21330 0.81131 0.94813 1.16189 1.21852 1.01032 0.90532 0.97336 1.20590 0.94336 0.94424 1.18163 1.17397 0.84431 0.85617 0.74861 1.43409 1.08278 1.11616 1.75391 1.90848 1.29343 1.75072 1.52528 1.26280 1.00774 0.79095 0.91836 1.84231 1.21905 1.28029 1.68557 1.21113 0.96831 0.81871 0.96099 1.21711 1.01528 0.94730 0.96566 1.22041 0.99091 0.95419 0.99936 1.20482 0.95318 0.84667 0.92986 1.42705 1.25947 1.08137 1.61135 1.19690 1.03836 0.90084 1.22821 0.90299 1.25567 0.97958 1.00974 1.02819 1.69834 1.17699 1.26021 1.48846 0.85100 0.77739 0.79573 0.77548 1.18691 1.22546 1.22211 1.21657 0.99851 0.95646 0.98102 1.21722 1.01707 0.94387 0.96651 0.90739 0.88628 0.88568 0.83833 0.75210 0.74667 0.70033 0.90748 0.89541 0.92252 0.94346 0.93265 0.92935 0.79868 0.94247 0.93324 0.91675 0.91136 0.89130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.76 8.64 127.77 1.10 1.87 16 2 N -0.59 -12.66 2.76 -827.18 -2.28 -14.94 16 3 C 0.59 15.43 7.64 86.47 0.66 16.10 16 4 O -0.57 -19.96 16.19 -4.30 -0.07 -20.03 16 5 C -0.08 -1.65 6.74 24.00 0.16 -1.48 16 6 C -0.09 -1.85 10.42 22.62 0.24 -1.61 16 7 C -0.27 -3.65 6.16 -20.08 -0.12 -3.78 16 8 C 0.59 8.97 8.09 86.68 0.70 9.67 16 9 N -0.82 -2.47 8.86 -175.84 -1.56 -4.03 16 10 O -0.60 -16.18 17.77 -4.02 -0.07 -16.26 16 11 C 0.09 0.33 11.64 67.72 0.79 1.12 16 12 O -0.13 -1.35 7.19 -0.83 -0.01 -1.35 16 13 C 0.14 3.69 2.51 44.99 0.11 3.80 16 14 C -0.11 -2.76 5.20 30.59 0.16 -2.61 16 15 C -0.12 -4.33 5.50 30.59 0.17 -4.16 16 16 C 0.17 6.56 2.77 44.99 0.12 6.68 16 17 N -0.74 -37.20 5.12 -322.94 -1.65 -38.85 16 18 C -0.23 -12.77 9.93 84.03 0.83 -11.94 16 19 H 0.08 4.12 7.83 -2.91 -0.02 4.09 16 20 C -0.08 -4.69 5.50 84.86 0.47 -4.23 16 21 N -0.97 -60.36 13.06 21.65 0.28 -60.07 16 22 Si 0.97 46.20 29.55 68.60 2.03 48.23 16 23 H -0.26 -11.56 7.11 99.48 0.71 -10.85 16 24 H -0.30 -14.34 7.11 99.48 0.71 -13.63 16 25 H -0.29 -14.04 7.11 99.48 0.71 -13.33 16 26 C -0.11 -3.62 5.39 30.61 0.17 -3.45 16 27 C -0.11 -2.53 5.20 30.61 0.16 -2.37 16 28 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.10 0.96 6.44 -2.39 -0.02 0.95 16 30 H 0.10 0.86 5.39 -2.39 -0.01 0.85 16 31 H 0.14 3.77 8.06 -2.91 -0.02 3.74 16 32 H 0.42 0.74 8.93 -92.70 -0.83 -0.09 16 33 H 0.42 -2.63 7.78 -92.71 -0.72 -3.35 16 34 H 0.28 -3.05 7.46 -2.91 -0.02 -3.07 16 35 H 0.07 2.40 6.90 -2.38 -0.02 2.38 16 36 H 0.09 1.86 7.67 -2.38 -0.02 1.84 16 37 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 38 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 39 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 40 H 0.05 1.93 8.08 -2.39 -0.02 1.92 16 41 H 0.37 20.33 7.80 -92.71 -0.72 19.61 16 42 H 0.25 14.99 8.31 -92.71 -0.77 14.22 16 43 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 44 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 45 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 46 H 0.09 1.74 6.67 -2.38 -0.02 1.72 16 Total: -1.00 -86.99 377.49 1.16 -85.83 By element: Atomic # 1 Polarization: 19.09 SS G_CDS: -1.22 Total: 17.87 kcal Atomic # 6 Polarization: -2.10 SS G_CDS: 5.72 Total: 3.62 kcal Atomic # 7 Polarization: -112.69 SS G_CDS: -5.21 Total: -117.90 kcal Atomic # 8 Polarization: -37.49 SS G_CDS: -0.15 Total: -37.64 kcal Atomic # 14 Polarization: 46.20 SS G_CDS: 2.03 Total: 48.23 kcal Total: -86.99 1.16 -85.83 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000963903028.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.081 kcal (2) G-P(sol) polarization free energy of solvation -86.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds