Wall clock time and date at job start Tue Mar 31 2020 18:52:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35679 * 116.99631 * 2 1 4 4 C 1.38746 * 119.57953 * 179.97438 * 3 2 1 5 5 C 1.39720 * 119.07344 * 180.23013 * 4 3 2 6 6 C 1.48178 * 120.86031 * 179.72709 * 5 4 3 7 7 O 1.21510 * 120.00066 * 16.23831 * 6 5 4 8 8 N 1.34773 * 120.00105 * 196.23572 * 6 5 4 9 9 C 1.47430 * 125.64658 * 5.60633 * 8 6 5 10 10 C 1.55140 * 104.71955 * 155.81363 * 9 8 6 11 11 C 1.55161 * 101.48447 * 37.29730 * 10 9 8 12 12 H 1.08992 * 110.72168 * 82.69061 * 11 10 9 13 13 N 1.46502 * 110.87001 * 205.89782 * 11 10 9 14 14 C 1.46496 * 119.99971 * 55.06451 * 13 11 10 15 15 C 1.36932 * 119.99382 * 235.06518 * 13 11 10 16 16 H 1.08000 * 120.00970 * 24.16862 * 15 13 11 17 17 C 1.38819 * 119.99571 * 204.16748 * 15 13 11 18 18 N 1.31624 * 120.00001 * 8.67508 * 17 15 13 19 19 Si 1.86796 * 119.99998 * 188.67495 * 17 15 13 20 20 H 1.48502 * 109.47174 * 0.02562 * 19 17 15 21 21 H 1.48509 * 109.47166 * 120.00172 * 19 17 15 22 22 H 1.48499 * 109.47255 * 239.99999 * 19 17 15 23 23 C 1.47024 * 125.64874 * 185.91112 * 8 6 5 24 24 C 1.39728 * 118.28079 * 359.52986 * 5 4 3 25 25 C 1.38743 * 119.07031 * 0.45336 * 24 5 4 26 26 O 1.35689 * 119.57844 * 179.76986 * 25 24 5 27 27 C 1.42895 * 116.99710 * 180.02562 * 26 25 24 28 28 N 1.32251 * 120.83832 * 359.78572 * 25 24 5 29 29 H 1.09003 * 109.46975 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47578 * 299.99649 * 1 2 3 31 31 H 1.08993 * 109.47575 * 60.00498 * 1 2 3 32 32 H 1.07998 * 120.45932 * 359.95994 * 4 3 2 33 33 H 1.08990 * 110.36686 * 274.74289 * 9 8 6 34 34 H 1.09005 * 110.36569 * 37.07180 * 9 8 6 35 35 H 1.08992 * 111.19096 * 279.19552 * 10 9 8 36 36 H 1.08992 * 110.90160 * 155.27424 * 10 9 8 37 37 H 1.09001 * 109.47446 * 94.33564 * 14 13 11 38 38 H 1.09010 * 109.46940 * 214.33711 * 14 13 11 39 39 H 1.08999 * 109.47178 * 334.32933 * 14 13 11 40 40 H 0.96998 * 119.99775 * 179.97438 * 18 17 15 41 41 H 1.09004 * 109.88126 * 300.44465 * 23 8 6 42 42 H 1.09001 * 109.88119 * 61.45233 * 23 8 6 43 43 H 1.07990 * 120.46505 * 180.21655 * 24 5 4 44 44 H 1.08998 * 109.47227 * 299.98982 * 27 26 25 45 45 H 1.08999 * 109.47613 * 59.99664 * 27 26 25 46 46 H 1.09007 * 109.46808 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2090 0.0000 4 6 3.4310 1.2715 0.0005 5 6 4.0542 2.5220 0.0054 6 6 5.5316 2.6349 0.0122 7 8 6.2157 1.6743 -0.2806 8 7 6.1167 3.8030 0.3432 9 6 5.4178 5.0067 0.8292 10 6 6.4920 5.7907 1.6281 11 6 7.7606 5.5363 0.7718 12 1 7.8052 6.2306 -0.0672 13 7 8.9715 5.6368 1.5903 14 6 9.1103 4.8172 2.7966 15 6 9.9735 6.4968 1.2276 16 1 9.7517 7.3553 0.6110 17 6 11.2746 6.2651 1.6526 18 7 11.5784 5.1358 2.2566 19 14 12.5942 7.5560 1.3671 20 1 11.9996 8.7268 0.6736 21 1 13.1556 7.9872 2.6726 22 1 13.6765 6.9806 0.5288 23 6 7.5570 4.0900 0.2733 24 6 3.2482 3.6634 -0.0005 25 6 1.8688 3.5146 -0.0013 26 8 1.0763 4.6160 -0.0023 27 6 -0.3361 4.3989 -0.0026 28 7 1.3165 2.3129 -0.0009 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5137 0.8899 31 1 -0.3634 0.5137 -0.8899 32 1 4.0198 0.3662 0.0016 33 1 5.0573 5.6009 -0.0104 34 1 4.5898 4.7274 1.4808 35 1 6.6106 5.3843 2.6324 36 1 6.2514 6.8531 1.6640 37 1 9.6513 3.9025 2.5542 38 1 9.6613 5.3754 3.5537 39 1 8.1217 4.5641 3.1796 40 1 12.4876 4.9738 2.5532 41 1 8.1045 3.3971 0.9123 42 1 7.9038 3.9979 -0.7559 43 1 3.6927 4.6475 -0.0005 44 1 -0.6169 3.8354 -0.8924 45 1 -0.6175 3.8364 0.8876 46 1 -0.8513 5.3595 -0.0030 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000971868314.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:52:42 Heat of formation + Delta-G solvation = -15.277094 kcal Electronic energy + Delta-G solvation = -29161.400432 eV Core-core repulsion = 25054.284233 eV Total energy + Delta-G solvation = -4107.116199 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.35262 -39.81994 -39.19674 -37.66835 -37.00510 -34.92537 -32.89693 -31.59046 -30.78660 -29.82096 -28.37892 -27.92662 -26.81653 -26.06532 -24.94119 -23.63332 -22.83328 -22.32228 -20.32783 -19.25270 -18.53076 -18.18478 -17.10428 -16.85398 -16.69784 -16.09560 -15.91313 -15.84248 -15.81528 -15.29215 -14.94731 -14.83803 -14.09167 -13.94779 -13.50665 -13.41231 -13.31413 -12.77936 -12.64196 -12.57829 -12.38806 -12.19578 -11.99860 -11.93005 -11.86690 -11.35736 -10.96505 -10.92189 -10.83618 -10.60035 -10.46023 -10.37871 -10.30568 -10.08394 -9.88534 -9.82796 -9.80650 -8.60190 -8.49214 -8.37774 -6.82735 -5.77833 -3.27619 0.52293 0.92230 2.52981 2.72862 2.86387 3.12861 3.35441 3.42427 3.44367 3.58875 3.88810 4.41028 4.45275 4.64847 4.81272 4.89585 4.91712 4.93777 4.95523 4.96780 5.07368 5.21125 5.23264 5.25817 5.30820 5.42398 5.48660 5.56826 5.73064 5.80843 5.88460 5.94458 5.96608 6.30283 6.32354 6.45814 6.50782 6.61885 6.81569 6.83860 7.03284 7.35230 7.38301 7.64477 7.71729 7.77527 8.19313 8.34089 9.17166 9.78434 10.27690 11.26336 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.023765 B = 0.002474 C = 0.002308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1177.923643 B =11314.304803 C =12126.560725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.301 6.301 3 C 0.356 3.644 4 C -0.172 4.172 5 C -0.010 4.010 6 C 0.568 3.432 7 O -0.527 6.527 8 N -0.600 5.600 9 C 0.090 3.910 10 C -0.155 4.155 11 C 0.173 3.827 12 H 0.080 0.920 13 N -0.586 5.586 14 C 0.160 3.840 15 C -0.261 4.261 16 H 0.071 0.929 17 C 0.005 3.995 18 N -0.904 5.904 19 Si 0.908 3.092 20 H -0.277 1.277 21 H -0.289 1.289 22 H -0.289 1.289 23 C 0.086 3.914 24 C -0.214 4.214 25 C 0.356 3.644 26 O -0.301 6.301 27 C 0.040 3.960 28 N -0.585 5.585 29 H 0.098 0.902 30 H 0.058 0.942 31 H 0.058 0.942 32 H 0.156 0.844 33 H 0.074 0.926 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.080 0.920 37 H 0.031 0.969 38 H 0.046 0.954 39 H 0.001 0.999 40 H 0.254 0.746 41 H 0.077 0.923 42 H 0.064 0.936 43 H 0.168 0.832 44 H 0.058 0.942 45 H 0.058 0.942 46 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.419 -3.544 -3.344 25.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.208 6.208 3 C 0.178 3.822 4 C -0.193 4.193 5 C -0.020 4.020 6 C 0.355 3.645 7 O -0.404 6.404 8 N -0.333 5.333 9 C -0.033 4.033 10 C -0.195 4.195 11 C 0.062 3.938 12 H 0.098 0.902 13 N -0.306 5.306 14 C 0.016 3.984 15 C -0.391 4.391 16 H 0.089 0.911 17 C -0.194 4.194 18 N -0.549 5.549 19 Si 0.738 3.262 20 H -0.202 1.202 21 H -0.216 1.216 22 H -0.216 1.216 23 C -0.038 4.038 24 C -0.235 4.235 25 C 0.178 3.822 26 O -0.208 6.208 27 C -0.055 4.055 28 N -0.325 5.325 29 H 0.116 0.884 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.174 0.826 33 H 0.092 0.908 34 H 0.097 0.903 35 H 0.098 0.902 36 H 0.099 0.901 37 H 0.049 0.951 38 H 0.065 0.935 39 H 0.019 0.981 40 H 0.064 0.936 41 H 0.095 0.905 42 H 0.082 0.918 43 H 0.185 0.815 44 H 0.076 0.924 45 H 0.077 0.923 46 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -25.582 -4.220 -3.420 26.152 hybrid contribution 0.998 0.540 -0.146 1.144 sum -24.584 -3.680 -3.566 25.112 Atomic orbital electron populations 1.22874 0.77116 1.03157 1.02337 1.86298 1.22959 1.23916 1.87586 1.19127 0.88616 0.83402 0.91050 1.20935 0.91447 0.99181 1.07780 1.19910 0.93880 0.92307 0.95890 1.17613 0.86027 0.82257 0.78621 1.90803 1.64206 1.36445 1.48942 1.48425 1.09969 1.11419 1.63452 1.22818 0.96400 0.86190 0.97843 1.23445 0.95760 0.99911 1.00341 1.21374 0.87100 0.92180 0.93133 0.90163 1.43915 1.15869 1.47100 1.23695 1.20831 0.94221 0.95463 0.87914 1.19264 0.86579 1.02382 1.30828 0.91107 1.25134 0.97217 0.96623 1.00420 1.70073 1.18691 1.22851 1.43248 0.86137 0.81814 0.80781 0.77492 1.20242 1.21602 1.21625 1.23050 0.78054 1.00883 1.01817 1.21868 0.90480 1.01628 1.09475 1.19185 0.88374 0.83728 0.90914 1.86289 1.19429 1.27428 1.87609 1.22874 0.77368 1.02930 1.02321 1.66596 1.41987 0.98633 1.25279 0.88405 0.92301 0.92319 0.82602 0.90768 0.90324 0.90211 0.90123 0.95073 0.93480 0.98093 0.93613 0.90465 0.91779 0.81472 0.92360 0.92320 0.88370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.29 10.38 101.05 1.05 1.34 16 2 O -0.30 -3.29 10.47 -18.74 -0.20 -3.49 16 3 C 0.36 4.35 7.48 -17.18 -0.13 4.22 16 4 C -0.17 -2.29 9.60 -38.84 -0.37 -2.66 16 5 C -0.01 -0.13 5.81 -104.70 -0.61 -0.74 16 6 C 0.57 9.54 7.75 -12.18 -0.09 9.45 16 7 O -0.53 -10.67 16.89 5.36 0.09 -10.58 16 8 N -0.60 -9.66 3.32 -171.35 -0.57 -10.23 16 9 C 0.09 1.15 4.94 -2.40 -0.01 1.14 16 10 C -0.15 -2.32 6.61 -24.45 -0.16 -2.49 16 11 C 0.17 3.28 3.43 -66.09 -0.23 3.05 16 12 H 0.08 1.48 7.93 -51.93 -0.41 1.07 16 13 N -0.59 -13.94 2.94 -171.38 -0.50 -14.44 16 14 C 0.16 3.83 7.74 59.84 0.46 4.29 16 15 C -0.26 -6.86 9.61 -15.06 -0.14 -7.01 16 16 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 17 C 0.00 0.14 5.18 -17.43 -0.09 0.05 16 18 N -0.90 -25.89 10.55 55.49 0.59 -25.31 16 19 Si 0.91 21.34 29.56 -169.99 -5.03 16.31 16 20 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 21 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 22 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 23 C 0.09 1.63 6.51 -3.06 -0.02 1.61 16 24 C -0.21 -2.55 8.17 -38.84 -0.32 -2.87 16 25 C 0.36 4.13 7.48 -17.18 -0.13 4.00 16 26 O -0.30 -3.06 10.47 -18.77 -0.20 -3.26 16 27 C 0.04 0.28 10.38 101.05 1.05 1.32 16 28 N -0.59 -6.78 8.02 -13.45 -0.11 -6.89 16 29 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.06 0.41 8.10 -51.93 -0.42 -0.01 16 31 H 0.06 0.40 8.10 -51.93 -0.42 -0.02 16 32 H 0.16 2.08 7.82 -52.49 -0.41 1.67 16 33 H 0.07 0.79 7.08 -51.93 -0.37 0.42 16 34 H 0.08 0.89 6.40 -51.93 -0.33 0.55 16 35 H 0.08 1.30 6.15 -51.93 -0.32 0.98 16 36 H 0.08 1.09 8.14 -51.93 -0.42 0.66 16 37 H 0.03 0.82 7.28 -51.93 -0.38 0.44 16 38 H 0.05 1.21 7.25 -51.92 -0.38 0.84 16 39 H 0.00 0.01 6.13 -51.93 -0.32 -0.30 16 40 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 41 H 0.08 1.69 7.04 -51.93 -0.37 1.32 16 42 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 43 H 0.17 1.78 4.02 -52.49 -0.21 1.56 16 44 H 0.06 0.39 8.10 -51.93 -0.42 -0.03 16 45 H 0.06 0.39 8.10 -51.93 -0.42 -0.03 16 46 H 0.10 0.43 8.14 -51.92 -0.42 0.01 16 LS Contribution 372.87 15.07 5.62 5.62 Total: -1.00 -31.87 372.87 -6.46 -38.33 By element: Atomic # 1 Polarization: 5.65 SS G_CDS: -6.41 Total: -0.76 kcal Atomic # 6 Polarization: 14.44 SS G_CDS: 0.25 Total: 14.69 kcal Atomic # 7 Polarization: -56.26 SS G_CDS: -0.59 Total: -56.86 kcal Atomic # 8 Polarization: -17.03 SS G_CDS: -0.30 Total: -17.33 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.03 Total: 16.31 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -31.87 -6.46 -38.33 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971868314.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.049 kcal (2) G-P(sol) polarization free energy of solvation -31.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.326 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds