Wall clock time and date at job start Tue Mar 31 2020 18:52:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35679 * 116.99631 * 2 1 4 4 C 1.38746 * 119.57953 * 179.97438 * 3 2 1 5 5 C 1.39720 * 119.07344 * 180.23013 * 4 3 2 6 6 C 1.48178 * 120.86031 * 179.72709 * 5 4 3 7 7 O 1.21510 * 120.00066 * 16.23831 * 6 5 4 8 8 N 1.34773 * 120.00105 * 196.23572 * 6 5 4 9 9 C 1.47430 * 125.64658 * 5.60633 * 8 6 5 10 10 C 1.55140 * 104.71955 * 155.81363 * 9 8 6 11 11 C 1.55161 * 101.48447 * 37.29730 * 10 9 8 12 12 H 1.08992 * 110.72168 * 82.69061 * 11 10 9 13 13 N 1.46502 * 110.87001 * 205.89782 * 11 10 9 14 14 C 1.46496 * 119.99971 * 55.06451 * 13 11 10 15 15 C 1.36932 * 119.99382 * 235.06518 * 13 11 10 16 16 H 1.08000 * 120.00970 * 24.16862 * 15 13 11 17 17 C 1.38819 * 119.99571 * 204.16748 * 15 13 11 18 18 N 1.31624 * 120.00001 * 8.67508 * 17 15 13 19 19 Si 1.86796 * 119.99998 * 188.67495 * 17 15 13 20 20 H 1.48502 * 109.47174 * 0.02562 * 19 17 15 21 21 H 1.48509 * 109.47166 * 120.00172 * 19 17 15 22 22 H 1.48499 * 109.47255 * 239.99999 * 19 17 15 23 23 C 1.47024 * 125.64874 * 185.91112 * 8 6 5 24 24 C 1.39728 * 118.28079 * 359.52986 * 5 4 3 25 25 C 1.38743 * 119.07031 * 0.45336 * 24 5 4 26 26 O 1.35689 * 119.57844 * 179.76986 * 25 24 5 27 27 C 1.42895 * 116.99710 * 180.02562 * 26 25 24 28 28 N 1.32251 * 120.83832 * 359.78572 * 25 24 5 29 29 H 1.09003 * 109.46975 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47578 * 299.99649 * 1 2 3 31 31 H 1.08993 * 109.47575 * 60.00498 * 1 2 3 32 32 H 1.07998 * 120.45932 * 359.95994 * 4 3 2 33 33 H 1.08990 * 110.36686 * 274.74289 * 9 8 6 34 34 H 1.09005 * 110.36569 * 37.07180 * 9 8 6 35 35 H 1.08992 * 111.19096 * 279.19552 * 10 9 8 36 36 H 1.08992 * 110.90160 * 155.27424 * 10 9 8 37 37 H 1.09001 * 109.47446 * 94.33564 * 14 13 11 38 38 H 1.09010 * 109.46940 * 214.33711 * 14 13 11 39 39 H 1.08999 * 109.47178 * 334.32933 * 14 13 11 40 40 H 0.96998 * 119.99775 * 179.97438 * 18 17 15 41 41 H 1.09004 * 109.88126 * 300.44465 * 23 8 6 42 42 H 1.09001 * 109.88119 * 61.45233 * 23 8 6 43 43 H 1.07990 * 120.46505 * 180.21655 * 24 5 4 44 44 H 1.08998 * 109.47227 * 299.98982 * 27 26 25 45 45 H 1.08999 * 109.47613 * 59.99664 * 27 26 25 46 46 H 1.09007 * 109.46808 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2090 0.0000 4 6 3.4310 1.2715 0.0005 5 6 4.0542 2.5220 0.0054 6 6 5.5316 2.6349 0.0122 7 8 6.2157 1.6743 -0.2806 8 7 6.1167 3.8030 0.3432 9 6 5.4178 5.0067 0.8292 10 6 6.4920 5.7907 1.6281 11 6 7.7606 5.5363 0.7718 12 1 7.8052 6.2306 -0.0672 13 7 8.9715 5.6368 1.5903 14 6 9.1103 4.8172 2.7966 15 6 9.9735 6.4968 1.2276 16 1 9.7517 7.3553 0.6110 17 6 11.2746 6.2651 1.6526 18 7 11.5784 5.1358 2.2566 19 14 12.5942 7.5560 1.3671 20 1 11.9996 8.7268 0.6736 21 1 13.1556 7.9872 2.6726 22 1 13.6765 6.9806 0.5288 23 6 7.5570 4.0900 0.2733 24 6 3.2482 3.6634 -0.0005 25 6 1.8688 3.5146 -0.0013 26 8 1.0763 4.6160 -0.0023 27 6 -0.3361 4.3989 -0.0026 28 7 1.3165 2.3129 -0.0009 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5137 0.8899 31 1 -0.3634 0.5137 -0.8899 32 1 4.0198 0.3662 0.0016 33 1 5.0573 5.6009 -0.0104 34 1 4.5898 4.7274 1.4808 35 1 6.6106 5.3843 2.6324 36 1 6.2514 6.8531 1.6640 37 1 9.6513 3.9025 2.5542 38 1 9.6613 5.3754 3.5537 39 1 8.1217 4.5641 3.1796 40 1 12.4876 4.9738 2.5532 41 1 8.1045 3.3971 0.9123 42 1 7.9038 3.9979 -0.7559 43 1 3.6927 4.6475 -0.0005 44 1 -0.6169 3.8354 -0.8924 45 1 -0.6175 3.8364 0.8876 46 1 -0.8513 5.3595 -0.0030 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000971868314.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:52:41 Heat of formation + Delta-G solvation = -39.066007 kcal Electronic energy + Delta-G solvation = -29162.431997 eV Core-core repulsion = 25054.284233 eV Total energy + Delta-G solvation = -4108.147763 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.31359 -41.06399 -39.97532 -39.05656 -37.97449 -36.64867 -34.08462 -33.21025 -31.70363 -31.30567 -29.56236 -28.83185 -28.06041 -27.49168 -26.20805 -24.73652 -24.25278 -23.55016 -21.40552 -20.82430 -19.60175 -19.02899 -18.94559 -17.95969 -17.58438 -17.36931 -17.07603 -16.84666 -16.67193 -16.53893 -16.34962 -15.80051 -15.62529 -15.07132 -14.92190 -14.68918 -14.47892 -14.19454 -14.03360 -13.83154 -13.65716 -13.34373 -12.98869 -12.94557 -12.77499 -12.61496 -12.56758 -12.40602 -12.33161 -12.18795 -12.04982 -11.80021 -11.73887 -11.52024 -11.40855 -11.05163 -10.94434 -10.63597 -9.78500 -9.34094 -8.79334 -7.82065 -5.33921 -0.51318 0.00043 1.48169 1.50020 1.54175 1.60494 1.62502 1.95434 2.07921 2.51759 2.57694 2.99277 3.30280 3.39233 3.53667 3.73593 3.80592 3.91844 4.00207 4.18874 4.28200 4.32493 4.36448 4.41449 4.42493 4.45903 4.46826 4.58970 4.62687 4.72165 4.78412 4.79422 4.87113 4.91512 4.96110 5.01894 5.18588 5.22853 5.31591 5.44554 5.67076 5.73327 5.73755 6.22163 6.33295 6.35778 6.48693 6.87250 7.14638 7.84602 8.29846 9.21117 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.023765 B = 0.002474 C = 0.002308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1177.923643 B =11314.304803 C =12126.560725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.312 6.312 3 C 0.358 3.642 4 C -0.187 4.187 5 C -0.016 4.016 6 C 0.566 3.434 7 O -0.573 6.573 8 N -0.598 5.598 9 C 0.093 3.907 10 C -0.141 4.141 11 C 0.166 3.834 12 H 0.090 0.910 13 N -0.601 5.601 14 C 0.180 3.820 15 C -0.261 4.261 16 H 0.082 0.918 17 C -0.056 4.056 18 N -0.942 5.942 19 Si 0.972 3.028 20 H -0.260 1.260 21 H -0.293 1.293 22 H -0.297 1.297 23 C 0.097 3.903 24 C -0.206 4.206 25 C 0.358 3.642 26 O -0.303 6.303 27 C 0.033 3.967 28 N -0.578 5.578 29 H 0.124 0.876 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.145 0.855 33 H 0.110 0.890 34 H 0.103 0.897 35 H 0.067 0.933 36 H 0.107 0.893 37 H -0.005 1.005 38 H 0.021 0.979 39 H 0.029 0.971 40 H 0.247 0.753 41 H 0.039 0.961 42 H 0.053 0.947 43 H 0.185 0.815 44 H 0.059 0.941 45 H 0.060 0.940 46 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.904 -1.488 -3.903 29.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.219 6.219 3 C 0.180 3.820 4 C -0.208 4.208 5 C -0.027 4.027 6 C 0.355 3.645 7 O -0.454 6.454 8 N -0.330 5.330 9 C -0.028 4.028 10 C -0.181 4.181 11 C 0.057 3.943 12 H 0.108 0.892 13 N -0.322 5.322 14 C 0.035 3.965 15 C -0.391 4.391 16 H 0.100 0.900 17 C -0.251 4.251 18 N -0.588 5.588 19 Si 0.800 3.200 20 H -0.184 1.184 21 H -0.220 1.220 22 H -0.224 1.224 23 C -0.028 4.028 24 C -0.227 4.227 25 C 0.180 3.820 26 O -0.209 6.209 27 C -0.061 4.061 28 N -0.318 5.318 29 H 0.142 0.858 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.163 0.837 33 H 0.127 0.873 34 H 0.121 0.879 35 H 0.085 0.915 36 H 0.126 0.874 37 H 0.013 0.987 38 H 0.040 0.960 39 H 0.048 0.952 40 H 0.056 0.944 41 H 0.057 0.943 42 H 0.072 0.928 43 H 0.202 0.798 44 H 0.078 0.922 45 H 0.079 0.921 46 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -29.149 -2.127 -3.993 29.499 hybrid contribution 1.879 -0.128 -0.008 1.884 sum -27.270 -2.255 -4.002 27.654 Atomic orbital electron populations 1.23168 0.75046 1.05093 1.02700 1.86297 1.25034 1.23329 1.87233 1.19082 0.88269 0.84067 0.90597 1.20903 0.92233 0.98814 1.08898 1.19552 0.91879 0.93408 0.97816 1.18068 0.87256 0.81584 0.77561 1.90774 1.65552 1.38044 1.51010 1.48421 1.08872 1.12490 1.63223 1.23109 0.95869 0.84655 0.99177 1.23326 0.93810 1.01924 0.99001 1.21600 0.86875 0.91968 0.93815 0.89156 1.44098 1.16975 1.46789 1.24378 1.20469 0.94797 0.93524 0.87723 1.19680 0.87113 1.02780 1.29551 0.90017 1.25933 0.99508 0.98491 1.01124 1.70263 1.18557 1.24857 1.45147 0.85125 0.78962 0.78938 0.76935 1.18363 1.22037 1.22450 1.22644 0.79806 1.00122 1.00270 1.21913 0.90608 1.01416 1.08721 1.19294 0.88580 0.84109 0.90050 1.86298 1.20921 1.26580 1.87100 1.23165 0.75648 1.04789 1.02509 1.66676 1.41653 0.98526 1.24986 0.85821 0.91881 0.91904 0.83684 0.87267 0.87904 0.91458 0.87430 0.98693 0.96049 0.95223 0.94389 0.94268 0.92845 0.79795 0.92185 0.92103 0.85577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 10.38 113.37 1.18 1.59 16 2 O -0.31 -6.43 10.47 -89.97 -0.94 -7.38 16 3 C 0.36 8.30 7.48 84.75 0.63 8.93 16 4 C -0.19 -4.94 9.60 22.75 0.22 -4.72 16 5 C -0.02 -0.44 5.81 -19.92 -0.12 -0.56 16 6 C 0.57 19.08 7.75 86.89 0.67 19.76 16 7 O -0.57 -24.25 16.89 -3.75 -0.06 -24.32 16 8 N -0.60 -18.72 3.32 -814.33 -2.71 -21.43 16 9 C 0.09 2.04 4.94 86.94 0.43 2.47 16 10 C -0.14 -3.83 6.61 32.07 0.21 -3.62 16 11 C 0.17 6.12 3.43 46.18 0.16 6.28 16 12 H 0.09 3.15 7.93 -2.39 -0.02 3.13 16 13 N -0.60 -28.80 2.94 -696.13 -2.04 -30.84 16 14 C 0.18 8.89 7.74 127.77 0.99 9.88 16 15 C -0.26 -13.71 9.61 84.04 0.81 -12.91 16 16 H 0.08 4.04 7.83 -2.91 -0.02 4.02 16 17 C -0.06 -3.07 5.18 84.86 0.44 -2.63 16 18 N -0.94 -56.01 10.55 21.65 0.23 -55.78 16 19 Si 0.97 44.36 29.56 68.60 2.03 46.39 16 20 H -0.26 -10.96 7.11 99.48 0.71 -10.25 16 21 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 22 H -0.30 -13.82 7.11 99.48 0.71 -13.11 16 23 C 0.10 3.72 6.51 86.73 0.56 4.29 16 24 C -0.21 -4.34 8.17 22.75 0.19 -4.15 16 25 C 0.36 7.24 7.48 84.75 0.63 7.87 16 26 O -0.30 -5.02 10.47 -90.08 -0.94 -5.96 16 27 C 0.03 0.34 10.38 113.37 1.18 1.51 16 28 N -0.58 -12.03 8.02 -422.18 -3.39 -15.41 16 29 H 0.12 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.06 0.72 8.10 -2.39 -0.02 0.70 16 31 H 0.06 0.72 8.10 -2.39 -0.02 0.70 16 32 H 0.15 4.07 7.82 -2.91 -0.02 4.04 16 33 H 0.11 1.75 7.08 -2.39 -0.02 1.74 16 34 H 0.10 1.87 6.40 -2.38 -0.02 1.86 16 35 H 0.07 2.03 6.15 -2.39 -0.01 2.01 16 36 H 0.11 2.41 8.14 -2.39 -0.02 2.39 16 37 H -0.01 -0.30 7.28 -2.39 -0.02 -0.31 16 38 H 0.02 1.13 7.25 -2.38 -0.02 1.11 16 39 H 0.03 1.26 6.13 -2.39 -0.01 1.24 16 40 H 0.25 14.33 8.31 -92.71 -0.77 13.56 16 41 H 0.04 1.81 7.04 -2.39 -0.02 1.79 16 42 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 43 H 0.19 3.11 4.02 -2.92 -0.01 3.10 16 44 H 0.06 0.61 8.10 -2.39 -0.02 0.59 16 45 H 0.06 0.61 8.10 -2.39 -0.02 0.59 16 46 H 0.13 0.58 8.14 -2.38 -0.02 0.56 16 Total: -1.00 -72.45 372.87 1.36 -71.08 By element: Atomic # 1 Polarization: 8.65 SS G_CDS: 1.01 Total: 9.66 kcal Atomic # 6 Polarization: 25.80 SS G_CDS: 8.18 Total: 33.99 kcal Atomic # 7 Polarization: -115.55 SS G_CDS: -7.91 Total: -123.46 kcal Atomic # 8 Polarization: -35.70 SS G_CDS: -1.95 Total: -37.65 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.39 kcal Total: -72.45 1.36 -71.08 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971868314.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.018 kcal (2) G-P(sol) polarization free energy of solvation -72.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds