Wall clock time and date at job start Tue Mar 31 2020 18:52:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.36936 * 120.00345 * 2 1 4 4 H 1.07993 * 120.00697 * 203.89084 * 3 2 1 5 5 C 1.38816 * 119.99677 * 23.89566 * 3 2 1 6 6 N 1.31622 * 120.00002 * 10.79789 * 5 3 2 7 7 Si 1.86799 * 119.99986 * 190.80095 * 5 3 2 8 8 H 1.48497 * 109.46967 * 60.00059 * 7 5 3 9 9 H 1.48504 * 109.47259 * 179.97438 * 7 5 3 10 10 H 1.48493 * 109.47174 * 299.99863 * 7 5 3 11 11 C 1.46497 * 119.99917 * 180.02562 * 2 1 3 12 12 H 1.08995 * 110.88804 * 176.11961 * 11 2 1 13 13 C 1.55158 * 111.00332 * 299.99248 * 11 2 1 14 14 C 1.54320 * 102.94307 * 153.57698 * 13 11 2 15 15 N 1.47022 * 107.27306 * 337.80782 * 14 13 11 16 16 C 1.34775 * 125.64860 * 178.89312 * 15 14 13 17 17 O 1.21604 * 119.99912 * 180.02562 * 16 15 14 18 18 C 1.47419 * 119.99746 * 0.02562 * 16 15 14 19 19 N 1.36058 * 126.45319 * 359.69136 * 18 16 15 20 20 C 1.29943 * 108.47886 * 179.86004 * 19 18 16 21 21 O 1.34047 * 109.24355 * 0.40221 * 20 19 18 22 22 C 1.34261 * 108.22744 * 359.75047 * 21 20 19 23 23 C 1.50691 * 126.52814 * 179.97438 * 22 21 20 24 24 H 1.09000 * 109.87544 * 164.03204 * 23 22 21 25 25 C 1.54098 * 109.87939 * 285.04075 * 23 22 21 26 26 C 1.54811 * 104.18907 * 121.45485 * 25 23 22 27 27 C 1.54994 * 102.09123 * 20.87844 * 26 25 23 28 28 O 1.43745 * 109.87892 * 42.87156 * 23 22 21 29 29 C 1.47422 * 108.70263 * 358.94316 * 15 14 13 30 30 H 1.09005 * 109.47115 * 275.02560 * 1 2 3 31 31 H 1.09004 * 109.47233 * 35.01992 * 1 2 3 32 32 H 1.09001 * 109.47579 * 155.02282 * 1 2 3 33 33 H 0.97001 * 120.00322 * 180.02562 * 6 5 3 34 34 H 1.09001 * 110.72373 * 271.94574 * 13 11 2 35 35 H 1.09008 * 110.71897 * 35.21652 * 13 11 2 36 36 H 1.09005 * 109.88232 * 97.22997 * 14 13 11 37 37 H 1.09005 * 109.88167 * 218.23635 * 14 13 11 38 38 H 1.08004 * 125.37689 * 180.12073 * 20 19 18 39 39 H 1.09003 * 110.48657 * 240.13003 * 25 23 22 40 40 H 1.08996 * 110.48853 * 2.64102 * 25 23 22 41 41 H 1.09002 * 110.90697 * 139.08344 * 26 25 23 42 42 H 1.09000 * 110.90219 * 262.68158 * 26 25 23 43 43 H 1.09001 * 110.61452 * 81.48097 * 27 26 25 44 44 H 1.09003 * 110.61536 * 204.32023 * 27 26 25 45 45 H 1.09004 * 110.36559 * 265.28887 * 29 15 14 46 46 H 1.08992 * 110.36875 * 142.96289 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1602 1.2260 -0.3787 5 6 1.5449 2.3365 0.4870 6 7 0.4049 2.2549 1.1399 7 14 2.3488 4.0007 0.2157 8 1 2.4818 4.2545 -1.2414 9 1 1.5092 5.0617 0.8278 10 1 3.6940 4.0090 0.8444 11 6 2.1974 -1.2687 -0.0006 12 1 3.2716 -1.0973 -0.0694 13 6 1.8484 -2.1129 1.2536 14 6 2.1063 -3.5588 0.7797 15 7 2.0263 -3.5579 -0.6883 16 6 2.2145 -4.6279 -1.4859 17 8 2.1238 -4.5100 -2.6928 18 6 2.5302 -5.9411 -0.8950 19 7 2.6679 -6.2195 0.4296 20 6 2.9426 -7.4830 0.5585 21 8 2.9990 -8.0489 -0.6554 22 6 2.7444 -7.1020 -1.5725 23 6 2.7041 -7.2887 -3.0672 24 1 2.2060 -6.4387 -3.5335 25 6 4.1373 -7.4225 -3.6174 26 6 4.1476 -8.8030 -4.3178 27 6 2.6382 -9.0519 -4.5670 28 8 2.0076 -8.5041 -3.3893 29 6 1.7073 -2.1924 -1.1435 30 1 -0.3633 0.0900 1.0238 31 1 -0.3634 0.8416 -0.5898 32 1 -0.3634 -0.9315 -0.4339 33 1 -0.0180 3.0590 1.4799 34 1 2.5043 -1.8569 2.0856 35 1 0.8026 -1.9785 1.5301 36 1 3.0981 -3.8814 1.0968 37 1 1.3498 -4.2252 1.1941 38 1 3.1048 -7.9953 1.4954 39 1 4.3461 -6.6290 -4.3350 40 1 4.8621 -7.3998 -2.8036 41 1 4.6950 -8.7575 -5.2593 42 1 4.5652 -9.5681 -3.6633 43 1 2.3048 -8.5252 -5.4611 44 1 2.4343 -10.1193 -4.6532 45 1 0.6324 -2.0816 -1.2863 46 1 2.2389 -1.9668 -2.0679 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972077785.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:52:54 Heat of formation + Delta-G solvation = -14.323104 kcal Electronic energy + Delta-G solvation = -29433.960341 eV Core-core repulsion = 25326.885511 eV Total energy + Delta-G solvation = -4107.074830 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.64020 -39.73586 -39.57173 -37.42601 -35.08906 -34.66573 -32.65860 -31.82667 -31.59936 -29.79014 -28.60405 -27.71901 -26.05996 -24.75004 -23.78152 -22.92831 -22.18125 -22.05148 -21.30703 -19.69560 -19.25211 -17.70416 -17.23126 -17.02863 -16.80661 -16.53229 -16.13351 -15.75815 -15.54764 -15.05959 -14.63677 -14.20077 -14.03921 -14.01302 -13.57530 -13.28061 -13.24474 -12.68108 -12.47205 -12.39802 -12.19150 -12.15705 -11.83967 -11.68198 -11.49924 -11.34536 -11.20305 -10.96801 -10.86305 -10.67333 -10.49753 -10.39365 -10.27762 -10.21663 -9.91916 -9.86055 -9.77739 -9.18309 -8.57639 -8.29867 -6.78082 -5.74549 -3.23231 0.87575 1.93435 2.31938 3.10321 3.26046 3.38571 3.43897 3.45042 3.50628 3.86112 4.16341 4.17630 4.47293 4.52075 4.58887 4.63587 4.89080 4.97885 5.15538 5.25359 5.27010 5.31473 5.34813 5.42219 5.51165 5.52136 5.60394 5.64495 5.70097 5.72578 5.82610 5.87458 6.02433 6.18598 6.34206 6.43125 6.47573 6.58038 6.68984 6.82448 6.93539 7.27693 7.36832 7.71675 7.74112 7.79139 8.22427 8.37455 9.20527 9.82248 10.31428 11.29798 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.023348 B = 0.002485 C = 0.002364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1198.946932 B =11264.571937 C =11843.128849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.158 3.842 2 N -0.585 5.585 3 C -0.260 4.260 4 H 0.069 0.931 5 C 0.005 3.995 6 N -0.906 5.906 7 Si 0.908 3.092 8 H -0.284 1.284 9 H -0.290 1.290 10 H -0.283 1.283 11 C 0.174 3.826 12 H 0.078 0.922 13 C -0.154 4.154 14 C 0.115 3.885 15 N -0.591 5.591 16 C 0.608 3.392 17 O -0.545 6.545 18 C -0.050 4.050 19 N -0.456 5.456 20 C 0.173 3.827 21 O -0.189 6.189 22 C 0.036 3.964 23 C 0.152 3.848 24 H 0.135 0.865 25 C -0.147 4.147 26 C -0.154 4.154 27 C 0.045 3.955 28 O -0.368 6.368 29 C 0.085 3.915 30 H 0.033 0.967 31 H 0.043 0.957 32 H 0.002 0.998 33 H 0.254 0.746 34 H 0.076 0.924 35 H 0.074 0.926 36 H 0.069 0.931 37 H 0.066 0.934 38 H 0.255 0.745 39 H 0.092 0.908 40 H 0.079 0.921 41 H 0.086 0.914 42 H 0.078 0.922 43 H 0.068 0.932 44 H 0.097 0.903 45 H 0.074 0.926 46 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.548 -24.177 -5.380 25.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 N -0.306 5.306 3 C -0.389 4.389 4 H 0.087 0.913 5 C -0.194 4.194 6 N -0.551 5.551 7 Si 0.737 3.263 8 H -0.210 1.210 9 H -0.216 1.216 10 H -0.209 1.209 11 C 0.063 3.937 12 H 0.096 0.904 13 C -0.195 4.195 14 C -0.008 4.008 15 N -0.322 5.322 16 C 0.396 3.604 17 O -0.424 6.424 18 C -0.170 4.170 19 N -0.185 5.185 20 C -0.056 4.056 21 O -0.074 6.074 22 C -0.021 4.021 23 C 0.094 3.906 24 H 0.152 0.848 25 C -0.184 4.184 26 C -0.192 4.192 27 C -0.031 4.031 28 O -0.287 6.287 29 C -0.039 4.039 30 H 0.052 0.948 31 H 0.062 0.938 32 H 0.021 0.979 33 H 0.064 0.936 34 H 0.094 0.906 35 H 0.093 0.907 36 H 0.088 0.912 37 H 0.085 0.915 38 H 0.271 0.729 39 H 0.110 0.890 40 H 0.098 0.902 41 H 0.104 0.896 42 H 0.097 0.903 43 H 0.086 0.914 44 H 0.115 0.885 45 H 0.092 0.908 46 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 6.140 -23.637 -5.353 25.001 hybrid contribution 0.585 0.413 -0.205 0.745 sum 6.725 -23.224 -5.558 24.809 Atomic orbital electron populations 1.20850 0.82421 0.95636 0.99678 1.43792 1.01880 0.99805 1.85113 1.19175 0.98928 0.85502 1.35313 0.91323 1.25058 0.97712 0.98644 0.97953 1.70051 1.18493 1.27557 1.38950 0.86294 0.78522 0.83562 0.77880 1.21007 1.21623 1.20895 1.21407 0.96229 0.85775 0.90298 0.90405 1.23303 1.02868 0.92681 1.00610 1.22096 1.01833 0.98230 0.78669 1.48208 1.66822 1.08847 1.08331 1.16289 0.77682 0.81252 0.85212 1.90729 1.54300 1.84121 1.13298 1.21494 1.10632 0.95839 0.89083 1.70958 1.15913 1.14406 1.17173 1.28148 1.00359 0.88722 0.88322 1.84394 1.67097 1.39325 1.16620 1.23578 1.00172 0.86327 0.91999 1.21739 0.94305 0.90982 0.83592 0.84778 1.23000 0.95564 0.98577 1.01299 1.23162 0.97455 0.96962 1.01581 1.23627 0.91151 0.99832 0.88526 1.88957 1.55762 1.38042 1.45925 1.23048 1.01374 0.79366 1.00083 0.94830 0.93806 0.97950 0.93617 0.90566 0.90699 0.91237 0.91541 0.72908 0.88968 0.90240 0.89575 0.90294 0.91420 0.88509 0.90796 0.90687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.84 7.88 59.84 0.47 4.31 16 2 N -0.59 -14.37 2.96 -171.03 -0.51 -14.88 16 3 C -0.26 -7.01 9.62 -15.06 -0.14 -7.15 16 4 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 5 C 0.00 0.14 5.14 -17.43 -0.09 0.05 16 6 N -0.91 -25.99 10.64 55.49 0.59 -25.40 16 7 Si 0.91 21.63 29.57 -169.99 -5.03 16.61 16 8 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 9 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 10 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 11 C 0.17 3.52 3.54 -65.78 -0.23 3.29 16 12 H 0.08 1.59 7.94 -51.93 -0.41 1.18 16 13 C -0.15 -2.74 6.54 -24.90 -0.16 -2.91 16 14 C 0.11 1.81 5.53 -3.07 -0.02 1.79 16 15 N -0.59 -10.26 3.33 -171.79 -0.57 -10.83 16 16 C 0.61 10.50 7.85 -12.52 -0.10 10.40 16 17 O -0.54 -10.20 14.83 5.27 0.08 -10.12 16 18 C -0.05 -0.74 6.83 -83.02 -0.57 -1.31 16 19 N -0.46 -5.93 8.84 -11.48 -0.10 -6.03 16 20 C 0.17 1.63 13.19 51.96 0.69 2.31 16 21 O -0.19 -2.14 10.73 6.45 0.07 -2.07 16 22 C 0.04 0.48 6.12 -35.08 -0.21 0.27 16 23 C 0.15 1.82 3.67 -27.31 -0.10 1.72 16 24 H 0.14 1.83 5.86 -51.93 -0.30 1.53 16 25 C -0.15 -1.33 6.63 -25.20 -0.17 -1.50 16 26 C -0.15 -1.05 7.15 -24.72 -0.18 -1.22 16 27 C 0.04 0.35 7.72 38.21 0.29 0.64 16 28 O -0.37 -4.38 11.17 -35.28 -0.39 -4.78 16 29 C 0.08 1.60 6.44 -2.53 -0.02 1.59 16 30 H 0.03 0.87 7.33 -51.93 -0.38 0.49 16 31 H 0.04 1.14 7.33 -51.93 -0.38 0.76 16 32 H 0.00 0.05 5.95 -51.93 -0.31 -0.26 16 33 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 34 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 35 H 0.07 1.42 7.33 -51.92 -0.38 1.04 16 36 H 0.07 1.04 7.63 -51.93 -0.40 0.64 16 37 H 0.07 1.02 7.76 -51.93 -0.40 0.61 16 38 H 0.26 0.96 8.06 -52.48 -0.42 0.54 16 39 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 40 H 0.08 0.73 7.69 -51.93 -0.40 0.33 16 41 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 44 H 0.10 0.58 8.14 -51.93 -0.42 0.15 16 45 H 0.07 1.46 5.95 -51.93 -0.31 1.15 16 46 H 0.07 1.45 8.04 -51.93 -0.42 1.04 16 LS Contribution 369.09 15.07 5.56 5.56 Total: -1.00 -32.63 369.09 -7.43 -40.07 By element: Atomic # 1 Polarization: 6.19 SS G_CDS: -6.60 Total: -0.41 kcal Atomic # 6 Polarization: 12.81 SS G_CDS: -0.54 Total: 12.27 kcal Atomic # 7 Polarization: -56.54 SS G_CDS: -0.59 Total: -57.13 kcal Atomic # 8 Polarization: -16.72 SS G_CDS: -0.25 Total: -16.97 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.03 Total: 16.61 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -32.63 -7.43 -40.07 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972077785.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.744 kcal (2) G-P(sol) polarization free energy of solvation -32.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds