Wall clock time and date at job start Tue Mar 31 2020 18:52:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.36936 * 120.00345 * 2 1 4 4 H 1.07993 * 120.00697 * 203.89084 * 3 2 1 5 5 C 1.38816 * 119.99677 * 23.89566 * 3 2 1 6 6 N 1.31622 * 120.00002 * 10.79789 * 5 3 2 7 7 Si 1.86799 * 119.99986 * 190.80095 * 5 3 2 8 8 H 1.48497 * 109.46967 * 60.00059 * 7 5 3 9 9 H 1.48504 * 109.47259 * 179.97438 * 7 5 3 10 10 H 1.48493 * 109.47174 * 299.99863 * 7 5 3 11 11 C 1.46497 * 119.99917 * 180.02562 * 2 1 3 12 12 H 1.08995 * 110.88804 * 176.11961 * 11 2 1 13 13 C 1.55158 * 111.00332 * 299.99248 * 11 2 1 14 14 C 1.54320 * 102.94307 * 153.57698 * 13 11 2 15 15 N 1.47022 * 107.27306 * 337.80782 * 14 13 11 16 16 C 1.34775 * 125.64860 * 178.89312 * 15 14 13 17 17 O 1.21604 * 119.99912 * 180.02562 * 16 15 14 18 18 C 1.47419 * 119.99746 * 0.02562 * 16 15 14 19 19 N 1.36058 * 126.45319 * 359.69136 * 18 16 15 20 20 C 1.29943 * 108.47886 * 179.86004 * 19 18 16 21 21 O 1.34047 * 109.24355 * 0.40221 * 20 19 18 22 22 C 1.34261 * 108.22744 * 359.75047 * 21 20 19 23 23 C 1.50691 * 126.52814 * 179.97438 * 22 21 20 24 24 H 1.09000 * 109.87544 * 164.03204 * 23 22 21 25 25 C 1.54098 * 109.87939 * 285.04075 * 23 22 21 26 26 C 1.54811 * 104.18907 * 121.45485 * 25 23 22 27 27 C 1.54994 * 102.09123 * 20.87844 * 26 25 23 28 28 O 1.43745 * 109.87892 * 42.87156 * 23 22 21 29 29 C 1.47422 * 108.70263 * 358.94316 * 15 14 13 30 30 H 1.09005 * 109.47115 * 275.02560 * 1 2 3 31 31 H 1.09004 * 109.47233 * 35.01992 * 1 2 3 32 32 H 1.09001 * 109.47579 * 155.02282 * 1 2 3 33 33 H 0.97001 * 120.00322 * 180.02562 * 6 5 3 34 34 H 1.09001 * 110.72373 * 271.94574 * 13 11 2 35 35 H 1.09008 * 110.71897 * 35.21652 * 13 11 2 36 36 H 1.09005 * 109.88232 * 97.22997 * 14 13 11 37 37 H 1.09005 * 109.88167 * 218.23635 * 14 13 11 38 38 H 1.08004 * 125.37689 * 180.12073 * 20 19 18 39 39 H 1.09003 * 110.48657 * 240.13003 * 25 23 22 40 40 H 1.08996 * 110.48853 * 2.64102 * 25 23 22 41 41 H 1.09002 * 110.90697 * 139.08344 * 26 25 23 42 42 H 1.09000 * 110.90219 * 262.68158 * 26 25 23 43 43 H 1.09001 * 110.61452 * 81.48097 * 27 26 25 44 44 H 1.09003 * 110.61536 * 204.32023 * 27 26 25 45 45 H 1.09004 * 110.36559 * 265.28887 * 29 15 14 46 46 H 1.08992 * 110.36875 * 142.96289 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1602 1.2260 -0.3787 5 6 1.5449 2.3365 0.4870 6 7 0.4049 2.2549 1.1399 7 14 2.3488 4.0007 0.2157 8 1 2.4818 4.2545 -1.2414 9 1 1.5092 5.0617 0.8278 10 1 3.6940 4.0090 0.8444 11 6 2.1974 -1.2687 -0.0006 12 1 3.2716 -1.0973 -0.0694 13 6 1.8484 -2.1129 1.2536 14 6 2.1063 -3.5588 0.7797 15 7 2.0263 -3.5579 -0.6883 16 6 2.2145 -4.6279 -1.4859 17 8 2.1238 -4.5100 -2.6928 18 6 2.5302 -5.9411 -0.8950 19 7 2.6679 -6.2195 0.4296 20 6 2.9426 -7.4830 0.5585 21 8 2.9990 -8.0489 -0.6554 22 6 2.7444 -7.1020 -1.5725 23 6 2.7041 -7.2887 -3.0672 24 1 2.2060 -6.4387 -3.5335 25 6 4.1373 -7.4225 -3.6174 26 6 4.1476 -8.8030 -4.3178 27 6 2.6382 -9.0519 -4.5670 28 8 2.0076 -8.5041 -3.3893 29 6 1.7073 -2.1924 -1.1435 30 1 -0.3633 0.0900 1.0238 31 1 -0.3634 0.8416 -0.5898 32 1 -0.3634 -0.9315 -0.4339 33 1 -0.0180 3.0590 1.4799 34 1 2.5043 -1.8569 2.0856 35 1 0.8026 -1.9785 1.5301 36 1 3.0981 -3.8814 1.0968 37 1 1.3498 -4.2252 1.1941 38 1 3.1048 -7.9953 1.4954 39 1 4.3461 -6.6290 -4.3350 40 1 4.8621 -7.3998 -2.8036 41 1 4.6950 -8.7575 -5.2593 42 1 4.5652 -9.5681 -3.6633 43 1 2.3048 -8.5252 -5.4611 44 1 2.4343 -10.1193 -4.6532 45 1 0.6324 -2.0816 -1.2863 46 1 2.2389 -1.9668 -2.0679 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000972077785.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:52:53 Heat of formation + Delta-G solvation = -37.286122 kcal Electronic energy + Delta-G solvation = -29434.956092 eV Core-core repulsion = 25326.885511 eV Total energy + Delta-G solvation = -4108.070582 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -44.55270 -41.06092 -40.40598 -38.95654 -36.62788 -35.88966 -33.46337 -33.43014 -32.60668 -31.41039 -29.79417 -28.94154 -28.07944 -26.11926 -24.55941 -24.46364 -23.50059 -22.83103 -22.21253 -20.97375 -20.78816 -18.96430 -18.83161 -18.16639 -17.85558 -17.46370 -17.29222 -17.07555 -16.44231 -16.36481 -16.15610 -15.64658 -15.14321 -14.95831 -14.84588 -14.67631 -14.42027 -14.40611 -14.17695 -13.83575 -13.44151 -13.05020 -12.92136 -12.81996 -12.78618 -12.54607 -12.49057 -12.39818 -12.25969 -12.16296 -12.10281 -11.97890 -11.81885 -11.66850 -11.45763 -11.32936 -10.91852 -10.63849 -10.17950 -9.68918 -8.78921 -7.82806 -5.33779 -0.13190 1.01233 1.41387 1.48408 1.50819 1.57004 1.83774 2.07948 2.51438 2.71010 2.96843 3.29731 3.36915 3.42906 3.52332 3.59900 3.82692 3.91539 3.95809 4.00160 4.17797 4.20463 4.29441 4.32054 4.35724 4.42073 4.56229 4.65214 4.72548 4.81697 4.82777 4.86114 4.92282 4.94377 5.00207 5.07965 5.09174 5.19629 5.21322 5.30329 5.40320 5.64360 5.70177 5.71756 6.29573 6.32192 6.44069 6.89387 7.13765 7.82784 8.27934 9.19899 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.023348 B = 0.002485 C = 0.002364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1198.946932 B =11264.571937 C =11843.128849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.176 3.824 2 N -0.601 5.601 3 C -0.269 4.269 4 H 0.072 0.928 5 C -0.048 4.048 6 N -0.935 5.935 7 Si 0.971 3.029 8 H -0.280 1.280 9 H -0.294 1.294 10 H -0.274 1.274 11 C 0.169 3.831 12 H 0.076 0.924 13 C -0.143 4.143 14 C 0.131 3.869 15 N -0.596 5.596 16 C 0.604 3.396 17 O -0.568 6.568 18 C -0.076 4.076 19 N -0.485 5.485 20 C 0.202 3.798 21 O -0.188 6.188 22 C 0.039 3.961 23 C 0.148 3.852 24 H 0.110 0.890 25 C -0.145 4.145 26 C -0.143 4.143 27 C 0.036 3.964 28 O -0.390 6.390 29 C 0.098 3.902 30 H 0.011 0.989 31 H 0.016 0.984 32 H 0.027 0.973 33 H 0.249 0.751 34 H 0.083 0.917 35 H 0.062 0.938 36 H 0.083 0.917 37 H 0.076 0.924 38 H 0.310 0.690 39 H 0.094 0.906 40 H 0.078 0.922 41 H 0.109 0.891 42 H 0.085 0.915 43 H 0.074 0.926 44 H 0.117 0.883 45 H 0.064 0.936 46 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.204 -26.586 -5.120 28.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 N -0.322 5.322 3 C -0.399 4.399 4 H 0.090 0.910 5 C -0.244 4.244 6 N -0.581 5.581 7 Si 0.799 3.201 8 H -0.207 1.207 9 H -0.221 1.221 10 H -0.199 1.199 11 C 0.060 3.940 12 H 0.095 0.905 13 C -0.183 4.183 14 C 0.009 3.991 15 N -0.327 5.327 16 C 0.394 3.606 17 O -0.449 6.449 18 C -0.194 4.194 19 N -0.214 5.214 20 C -0.026 4.026 21 O -0.074 6.074 22 C -0.019 4.019 23 C 0.089 3.911 24 H 0.127 0.873 25 C -0.183 4.183 26 C -0.181 4.181 27 C -0.040 4.040 28 O -0.310 6.310 29 C -0.026 4.026 30 H 0.030 0.970 31 H 0.035 0.965 32 H 0.046 0.954 33 H 0.058 0.942 34 H 0.101 0.899 35 H 0.081 0.919 36 H 0.101 0.899 37 H 0.094 0.906 38 H 0.324 0.676 39 H 0.112 0.888 40 H 0.097 0.903 41 H 0.127 0.873 42 H 0.104 0.896 43 H 0.092 0.908 44 H 0.135 0.865 45 H 0.082 0.918 46 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 7.818 -26.077 -5.097 27.697 hybrid contribution 0.083 1.008 -0.305 1.056 sum 7.901 -25.070 -5.403 26.835 Atomic orbital electron populations 1.20548 0.82673 0.95670 0.97940 1.43939 1.02004 1.00763 1.85480 1.19508 0.99129 0.86666 1.34575 0.91018 1.25805 0.98439 1.01890 0.98217 1.70213 1.19814 1.27931 1.40179 0.85293 0.77773 0.79353 0.77696 1.20653 1.22053 1.19939 1.21503 0.95736 0.84714 0.92061 0.90534 1.23138 1.02196 0.93502 0.99474 1.22004 1.02882 0.96652 0.77611 1.48227 1.67301 1.08220 1.08975 1.16667 0.76940 0.82035 0.84998 1.90712 1.55110 1.84714 1.14337 1.21148 1.12936 0.94978 0.90387 1.70895 1.17992 1.16394 1.16079 1.29383 0.96465 0.87741 0.88999 1.84432 1.67072 1.38839 1.17054 1.23693 0.99295 0.86167 0.92721 1.21644 0.95782 0.90453 0.83174 0.87253 1.23006 0.93564 1.00256 1.01425 1.23160 0.96969 0.95432 1.02522 1.23919 0.91686 1.00903 0.87461 1.88923 1.56729 1.37858 1.47512 1.22698 1.00429 0.80363 0.99127 0.97042 0.96526 0.95443 0.94168 0.89869 0.91906 0.89873 0.90601 0.67583 0.88780 0.90308 0.87279 0.89592 0.90794 0.86523 0.91821 0.91571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.77 7.88 127.77 1.01 9.78 16 2 N -0.60 -29.93 2.96 -695.03 -2.06 -31.99 16 3 C -0.27 -14.65 9.62 84.03 0.81 -13.84 16 4 H 0.07 3.78 7.83 -2.91 -0.02 3.76 16 5 C -0.05 -2.67 5.14 84.86 0.44 -2.23 16 6 N -0.94 -54.84 10.64 21.65 0.23 -54.60 16 7 Si 0.97 44.84 29.57 68.60 2.03 46.87 16 8 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 9 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 10 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 11 C 0.17 6.88 3.54 46.39 0.16 7.04 16 12 H 0.08 3.12 7.94 -2.39 -0.02 3.10 16 13 C -0.14 -5.00 6.54 31.78 0.21 -4.79 16 14 C 0.13 3.96 5.53 86.73 0.48 4.44 16 15 N -0.60 -20.54 3.33 -815.67 -2.71 -23.25 16 16 C 0.60 20.94 7.85 86.66 0.68 21.62 16 17 O -0.57 -21.79 14.83 -4.04 -0.06 -21.85 16 18 C -0.08 -2.18 6.83 40.41 0.28 -1.90 16 19 N -0.49 -11.53 8.84 -305.14 -2.70 -14.23 16 20 C 0.20 3.09 13.19 130.52 1.72 4.82 16 21 O -0.19 -3.79 10.73 0.42 0.00 -3.79 16 22 C 0.04 0.99 6.12 25.19 0.15 1.15 16 23 C 0.15 3.50 3.67 30.22 0.11 3.61 16 24 H 0.11 3.11 5.86 -2.39 -0.01 3.10 16 25 C -0.14 -2.46 6.63 31.58 0.21 -2.26 16 26 C -0.14 -1.61 7.15 31.89 0.23 -1.38 16 27 C 0.04 0.49 7.72 72.66 0.56 1.05 16 28 O -0.39 -8.98 11.17 -148.93 -1.66 -10.64 16 29 C 0.10 3.75 6.44 86.86 0.56 4.31 16 30 H 0.01 0.61 7.33 -2.38 -0.02 0.59 16 31 H 0.02 0.88 7.33 -2.39 -0.02 0.86 16 32 H 0.03 1.20 5.95 -2.39 -0.01 1.18 16 33 H 0.25 14.24 8.31 -92.71 -0.77 13.47 16 34 H 0.08 2.80 8.14 -2.39 -0.02 2.78 16 35 H 0.06 2.37 7.33 -2.38 -0.02 2.35 16 36 H 0.08 2.33 7.63 -2.38 -0.02 2.31 16 37 H 0.08 2.19 7.76 -2.38 -0.02 2.18 16 38 H 0.31 0.65 8.06 -2.91 -0.02 0.62 16 39 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 40 H 0.08 1.34 7.69 -2.39 -0.02 1.32 16 41 H 0.11 0.74 8.14 -2.39 -0.02 0.72 16 42 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 43 H 0.07 0.90 8.14 -2.39 -0.02 0.89 16 44 H 0.12 1.11 8.14 -2.39 -0.02 1.09 16 45 H 0.06 2.55 5.95 -2.38 -0.01 2.53 16 46 H 0.07 2.62 8.04 -2.39 -0.02 2.60 16 Total: -1.00 -72.36 369.09 1.68 -70.68 By element: Atomic # 1 Polarization: 10.40 SS G_CDS: 1.00 Total: 11.40 kcal Atomic # 6 Polarization: 23.80 SS G_CDS: 7.60 Total: 31.40 kcal Atomic # 7 Polarization: -116.83 SS G_CDS: -7.24 Total: -124.07 kcal Atomic # 8 Polarization: -34.56 SS G_CDS: -1.72 Total: -36.28 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 2.03 Total: 46.87 kcal Total: -72.36 1.68 -70.68 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972077785.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.394 kcal (2) G-P(sol) polarization free energy of solvation -72.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds