Wall clock time and date at job start Tue Mar 31 2020 19:18:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35729 * 116.99708 * 2 1 4 4 C 1.41853 * 126.78398 * 179.97438 * 3 2 1 5 5 C 1.36663 * 103.81307 * 180.02562 * 4 3 2 6 6 C 1.47544 * 126.88339 * 179.97438 * 5 4 3 7 7 O 1.21583 * 119.99386 * 0.02562 * 6 5 4 8 8 N 1.34773 * 120.00043 * 180.02562 * 6 5 4 9 9 C 1.46507 * 119.99531 * 180.02562 * 8 6 5 10 10 H 1.08994 * 109.02065 * 33.93950 * 9 8 6 11 11 C 1.52523 * 109.03179 * 274.99765 * 9 8 6 12 12 C 1.53843 * 111.60499 * 185.50007 * 11 9 8 13 13 C 1.51291 * 107.11938 * 57.22826 * 12 11 9 14 14 H 1.09004 * 110.23668 * 54.32821 * 13 12 11 15 15 C 1.52326 * 117.46439 * 181.21254 * 13 12 11 16 16 N 1.48244 * 105.86869 * 145.26994 * 15 13 12 17 17 C 1.36929 * 125.78738 * 176.85301 * 16 15 13 18 18 H 1.08001 * 120.00312 * 179.97438 * 17 16 15 19 19 C 1.38813 * 120.00155 * 359.95412 * 17 16 15 20 20 N 1.31628 * 119.99692 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00392 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.46834 * 89.99778 * 21 19 17 23 23 H 1.48504 * 109.47348 * 209.99988 * 21 19 17 24 24 H 1.48499 * 109.46836 * 329.99947 * 21 19 17 25 25 C 1.48662 * 108.42816 * 356.81187 * 16 15 13 26 26 C 1.53060 * 103.44818 * 335.62608 * 25 16 15 27 27 H 1.09003 * 110.55285 * 283.27097 * 26 25 16 28 28 C 1.51619 * 116.67999 * 155.89066 * 26 25 16 29 29 O 1.34656 * 106.24042 * 0.24299 * 5 4 3 30 30 N 1.20876 * 111.63233 * 359.56012 * 29 5 4 31 31 H 1.08989 * 109.47283 * 60.00132 * 1 2 3 32 32 H 1.08998 * 109.46886 * 180.02562 * 1 2 3 33 33 H 1.09003 * 109.47095 * 300.00203 * 1 2 3 34 34 H 1.07998 * 128.09807 * 359.97438 * 4 3 2 35 35 H 0.96994 * 120.00089 * 0.02562 * 8 6 5 36 36 H 1.09002 * 109.04443 * 306.02980 * 11 9 8 37 37 H 1.09003 * 109.04080 * 64.97794 * 11 9 8 38 38 H 1.09005 * 109.93867 * 176.54203 * 12 11 9 39 39 H 1.08991 * 109.94343 * 297.77542 * 12 11 9 40 40 H 1.08992 * 110.17424 * 26.16760 * 15 13 12 41 41 H 1.09010 * 110.17157 * 264.36217 * 15 13 12 42 42 H 0.97003 * 119.99836 * 180.02562 * 20 19 17 43 43 H 1.09004 * 110.62481 * 217.13507 * 25 16 15 44 44 H 1.09005 * 110.62445 * 94.11580 * 25 16 15 45 45 H 1.08996 * 109.94233 * 64.35028 * 28 26 25 46 46 H 1.08997 * 110.01522 * 303.14336 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2094 0.0000 4 6 3.4430 1.4505 0.0005 5 6 3.5390 2.8138 0.0009 6 6 4.7784 3.6143 0.0020 7 8 5.8603 3.0595 0.0022 8 7 4.7112 4.9603 0.0027 9 6 5.9420 5.7551 0.0033 10 1 6.7042 5.2300 -0.5723 11 6 6.4279 5.9186 1.4398 12 6 7.6430 6.8584 1.5233 13 6 7.2267 8.1797 0.9152 14 1 6.3248 8.5512 1.4018 15 6 8.2735 9.2844 0.8512 16 7 8.0033 10.0267 -0.4033 17 6 8.6696 11.1433 -0.8323 18 1 8.3944 11.6109 -1.7662 19 6 9.6985 11.6746 -0.0668 20 7 10.0333 11.1053 1.0717 21 14 10.6070 13.1984 -0.6517 22 1 9.9267 14.4110 -0.1302 23 1 12.0056 13.1626 -0.1537 24 1 10.6110 13.2329 -2.1363 25 6 6.8870 9.3526 -1.1170 26 6 6.9450 7.9159 -0.5923 27 1 7.7616 7.3690 -1.0638 28 6 5.6600 7.1140 -0.6600 29 8 2.2758 3.2802 0.0060 30 7 1.4686 2.3805 0.0001 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3633 0.5139 0.8900 34 1 4.2442 0.7263 0.0014 35 1 3.8481 5.4028 0.0029 36 1 5.6189 6.3286 2.0444 37 1 6.7063 4.9414 1.8344 38 1 7.9292 7.0042 2.5649 39 1 8.4777 6.4375 0.9629 40 1 9.2740 8.8531 0.8247 41 1 8.1723 9.9483 1.7099 42 1 10.7520 11.4768 1.6069 43 1 7.0510 9.3749 -2.1944 44 1 5.9335 9.8159 -0.8631 45 1 5.3679 6.9668 -1.6997 46 1 4.8674 7.6332 -0.1212 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000979666354.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:18:38 Heat of formation + Delta-G solvation = 20.239575 kcal Electronic energy + Delta-G solvation = -28620.464367 eV Core-core repulsion = 24514.888287 eV Total energy + Delta-G solvation = -4105.576080 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -45.40243 -40.36127 -39.34302 -38.92209 -35.87481 -33.81877 -33.59821 -32.33291 -31.76457 -30.61803 -28.78924 -28.13130 -26.39109 -25.23800 -24.07593 -23.71388 -22.04825 -21.43207 -20.62334 -19.96596 -19.64673 -19.04314 -18.37756 -17.30699 -16.72336 -16.54356 -16.31956 -16.02504 -15.34282 -15.14322 -14.90254 -14.49353 -14.35308 -14.10291 -14.00381 -13.82088 -13.33777 -12.73363 -12.43732 -12.39164 -12.36992 -12.14158 -11.94112 -11.88485 -11.61625 -11.29809 -10.98800 -10.82689 -10.74180 -10.59565 -10.56817 -10.29114 -10.01411 -9.91506 -9.86678 -9.80263 -9.59335 -9.46480 -9.12080 -8.57635 -6.79577 -5.66981 -2.99862 0.35762 1.65859 2.17336 2.20025 2.65601 3.01198 3.42422 3.47352 3.49323 3.64150 4.30916 4.47486 4.51849 4.57787 4.64861 4.73305 4.76074 4.84337 4.98165 5.12766 5.24482 5.30054 5.36371 5.50644 5.58658 5.64043 5.64246 5.75424 5.97833 6.07898 6.12054 6.21170 6.26902 6.31778 6.37476 6.42677 6.53572 6.62576 6.66541 6.84677 7.01302 7.06292 7.58691 7.58889 7.68355 7.72017 7.86756 8.26770 9.24185 9.84811 10.52651 11.44964 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.042895 B = 0.001922 C = 0.001883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 652.599763 B =14565.496228 C =14866.964303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.281 6.281 3 C 0.204 3.796 4 C -0.154 4.154 5 C -0.056 4.056 6 C 0.604 3.396 7 O -0.506 6.506 8 N -0.706 5.706 9 C 0.147 3.853 10 H 0.092 0.908 11 C -0.126 4.126 12 C -0.096 4.096 13 C -0.117 4.117 14 H 0.064 0.936 15 C 0.188 3.812 16 N -0.609 5.609 17 C -0.225 4.225 18 H 0.077 0.923 19 C -0.010 4.010 20 N -0.922 5.922 21 Si 0.910 3.090 22 H -0.290 1.290 23 H -0.291 1.291 24 H -0.282 1.282 25 C 0.143 3.857 26 C -0.105 4.105 27 H 0.077 0.923 28 C -0.109 4.109 29 O 0.118 5.882 30 N -0.389 5.389 31 H 0.061 0.939 32 H 0.108 0.892 33 H 0.061 0.939 34 H 0.191 0.809 35 H 0.407 0.593 36 H 0.062 0.938 37 H 0.063 0.937 38 H 0.066 0.934 39 H 0.066 0.934 40 H 0.039 0.961 41 H 0.050 0.950 42 H 0.251 0.749 43 H 0.039 0.961 44 H 0.020 0.980 45 H 0.068 0.932 46 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.936 -20.275 -0.680 27.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.187 6.187 3 C 0.007 3.993 4 C -0.177 4.177 5 C -0.122 4.122 6 C 0.386 3.614 7 O -0.381 6.381 8 N -0.356 5.356 9 C 0.044 3.956 10 H 0.110 0.890 11 C -0.164 4.164 12 C -0.135 4.135 13 C -0.136 4.136 14 H 0.082 0.918 15 C 0.064 3.936 16 N -0.336 5.336 17 C -0.354 4.354 18 H 0.095 0.905 19 C -0.206 4.206 20 N -0.570 5.570 21 Si 0.741 3.259 22 H -0.217 1.217 23 H -0.217 1.217 24 H -0.208 1.208 25 C 0.018 3.982 26 C -0.125 4.125 27 H 0.096 0.904 28 C -0.147 4.147 29 O 0.051 5.949 30 N -0.113 5.113 31 H 0.080 0.920 32 H 0.126 0.874 33 H 0.080 0.920 34 H 0.208 0.792 35 H 0.242 0.758 36 H 0.081 0.919 37 H 0.082 0.918 38 H 0.085 0.915 39 H 0.084 0.916 40 H 0.057 0.943 41 H 0.068 0.932 42 H 0.062 0.938 43 H 0.057 0.943 44 H 0.038 0.962 45 H 0.086 0.914 46 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -18.113 -20.427 -0.618 27.308 hybrid contribution 0.374 0.552 -0.215 0.701 sum -17.739 -19.875 -0.833 26.653 Atomic orbital electron populations 1.23122 0.76421 1.04405 1.02533 1.86231 1.22878 1.20300 1.89287 1.21906 0.90656 0.85858 1.00858 1.22204 0.94460 0.95018 1.06028 1.24157 0.87083 0.93916 1.07023 1.16481 0.84989 0.82244 0.77700 1.90910 1.26355 1.71185 1.49663 1.46123 1.11414 1.05011 1.73082 1.21305 0.85248 0.91429 0.97637 0.89013 1.21929 0.98865 1.00294 0.95339 1.21171 0.96524 0.94448 1.01332 1.22145 1.00943 0.95805 0.94748 0.91785 1.20813 0.93957 0.89580 0.89287 1.45094 1.37205 1.30273 1.21053 1.19065 1.11149 1.01317 1.03839 0.90533 1.24785 0.99220 0.99450 0.97171 1.69965 1.32090 1.41192 1.13768 0.86137 0.79090 0.82806 0.77841 1.21706 1.21730 1.20771 1.21282 0.91754 0.89705 0.95504 1.21997 0.96104 0.96607 0.97777 0.90421 1.21609 0.99059 0.93695 1.00349 1.84951 1.11795 1.29676 1.68462 1.74003 1.15788 0.96722 1.24782 0.92045 0.87383 0.92050 0.79184 0.75792 0.91931 0.91797 0.91534 0.91568 0.94312 0.93199 0.93843 0.94300 0.96220 0.91361 0.91090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 10.73 101.05 1.08 1.25 16 2 O -0.28 -2.47 10.57 -18.89 -0.20 -2.67 16 3 C 0.20 2.01 8.00 -16.72 -0.13 1.87 16 4 C -0.15 -1.44 10.97 -38.77 -0.43 -1.87 16 5 C -0.06 -0.54 7.29 -36.36 -0.26 -0.80 16 6 C 0.60 6.59 7.77 -12.47 -0.10 6.49 16 7 O -0.51 -7.10 16.54 5.29 0.09 -7.01 16 8 N -0.71 -6.71 5.03 -54.67 -0.27 -6.98 16 9 C 0.15 1.68 2.45 -67.75 -0.17 1.51 16 10 H 0.09 1.19 7.52 -51.93 -0.39 0.80 16 11 C -0.13 -1.53 5.38 -26.54 -0.14 -1.67 16 12 C -0.10 -1.41 5.69 -27.15 -0.15 -1.57 16 13 C -0.12 -2.04 2.30 -90.43 -0.21 -2.25 16 14 H 0.06 1.09 7.94 -51.93 -0.41 0.68 16 15 C 0.19 4.44 5.07 -3.43 -0.02 4.42 16 16 N -0.61 -15.35 3.45 -170.41 -0.59 -15.94 16 17 C -0.23 -6.27 10.30 -15.06 -0.16 -6.42 16 18 H 0.08 2.06 7.83 -52.49 -0.41 1.65 16 19 C -0.01 -0.29 5.49 -17.43 -0.10 -0.39 16 20 N -0.92 -27.08 10.36 55.49 0.58 -26.50 16 21 Si 0.91 22.15 29.55 -169.99 -5.02 17.13 16 22 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 23 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 24 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 25 C 0.14 2.83 6.90 -2.82 -0.02 2.82 16 26 C -0.10 -1.69 2.47 -89.89 -0.22 -1.91 16 27 H 0.08 1.32 8.06 -51.93 -0.42 0.91 16 28 C -0.11 -1.28 5.16 -27.00 -0.14 -1.42 16 29 O 0.12 1.12 11.03 15.51 0.17 1.29 16 30 N -0.39 -3.98 11.50 30.47 0.35 -3.63 16 31 H 0.06 0.33 8.14 -51.94 -0.42 -0.09 16 32 H 0.11 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.19 1.49 8.06 -52.49 -0.42 1.07 16 35 H 0.41 2.92 8.43 -40.82 -0.34 2.58 16 36 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 39 H 0.07 1.01 8.06 -51.93 -0.42 0.59 16 40 H 0.04 1.01 7.60 -51.93 -0.39 0.62 16 41 H 0.05 1.32 7.30 -51.92 -0.38 0.95 16 42 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 43 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 44 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 45 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 46 H 0.07 0.78 7.99 -51.93 -0.41 0.37 16 LS Contribution 375.69 15.07 5.66 5.66 Total: -1.00 -32.37 375.69 -7.34 -39.72 By element: Atomic # 1 Polarization: 5.84 SS G_CDS: -6.95 Total: -1.11 kcal Atomic # 6 Polarization: 1.21 SS G_CDS: -1.16 Total: 0.05 kcal Atomic # 7 Polarization: -53.12 SS G_CDS: 0.06 Total: -53.06 kcal Atomic # 8 Polarization: -8.46 SS G_CDS: 0.06 Total: -8.40 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -32.37 -7.34 -39.72 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000979666354.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.956 kcal (2) G-P(sol) polarization free energy of solvation -32.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.716 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds