Wall clock time and date at job start Tue Mar 31 2020 19:18:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35729 * 116.99708 * 2 1 4 4 C 1.41853 * 126.78398 * 179.97438 * 3 2 1 5 5 C 1.36663 * 103.81307 * 180.02562 * 4 3 2 6 6 C 1.47544 * 126.88339 * 179.97438 * 5 4 3 7 7 O 1.21583 * 119.99386 * 0.02562 * 6 5 4 8 8 N 1.34773 * 120.00043 * 180.02562 * 6 5 4 9 9 C 1.46507 * 119.99531 * 180.02562 * 8 6 5 10 10 H 1.08994 * 109.02065 * 33.93950 * 9 8 6 11 11 C 1.52523 * 109.03179 * 274.99765 * 9 8 6 12 12 C 1.53843 * 111.60499 * 185.50007 * 11 9 8 13 13 C 1.51291 * 107.11938 * 57.22826 * 12 11 9 14 14 H 1.09004 * 110.23668 * 54.32821 * 13 12 11 15 15 C 1.52326 * 117.46439 * 181.21254 * 13 12 11 16 16 N 1.48244 * 105.86869 * 145.26994 * 15 13 12 17 17 C 1.36929 * 125.78738 * 176.85301 * 16 15 13 18 18 H 1.08001 * 120.00312 * 179.97438 * 17 16 15 19 19 C 1.38813 * 120.00155 * 359.95412 * 17 16 15 20 20 N 1.31628 * 119.99692 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00392 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.46834 * 89.99778 * 21 19 17 23 23 H 1.48504 * 109.47348 * 209.99988 * 21 19 17 24 24 H 1.48499 * 109.46836 * 329.99947 * 21 19 17 25 25 C 1.48662 * 108.42816 * 356.81187 * 16 15 13 26 26 C 1.53060 * 103.44818 * 335.62608 * 25 16 15 27 27 H 1.09003 * 110.55285 * 283.27097 * 26 25 16 28 28 C 1.51619 * 116.67999 * 155.89066 * 26 25 16 29 29 O 1.34656 * 106.24042 * 0.24299 * 5 4 3 30 30 N 1.20876 * 111.63233 * 359.56012 * 29 5 4 31 31 H 1.08989 * 109.47283 * 60.00132 * 1 2 3 32 32 H 1.08998 * 109.46886 * 180.02562 * 1 2 3 33 33 H 1.09003 * 109.47095 * 300.00203 * 1 2 3 34 34 H 1.07998 * 128.09807 * 359.97438 * 4 3 2 35 35 H 0.96994 * 120.00089 * 0.02562 * 8 6 5 36 36 H 1.09002 * 109.04443 * 306.02980 * 11 9 8 37 37 H 1.09003 * 109.04080 * 64.97794 * 11 9 8 38 38 H 1.09005 * 109.93867 * 176.54203 * 12 11 9 39 39 H 1.08991 * 109.94343 * 297.77542 * 12 11 9 40 40 H 1.08992 * 110.17424 * 26.16760 * 15 13 12 41 41 H 1.09010 * 110.17157 * 264.36217 * 15 13 12 42 42 H 0.97003 * 119.99836 * 180.02562 * 20 19 17 43 43 H 1.09004 * 110.62481 * 217.13507 * 25 16 15 44 44 H 1.09005 * 110.62445 * 94.11580 * 25 16 15 45 45 H 1.08996 * 109.94233 * 64.35028 * 28 26 25 46 46 H 1.08997 * 110.01522 * 303.14336 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2094 0.0000 4 6 3.4430 1.4505 0.0005 5 6 3.5390 2.8138 0.0009 6 6 4.7784 3.6143 0.0020 7 8 5.8603 3.0595 0.0022 8 7 4.7112 4.9603 0.0027 9 6 5.9420 5.7551 0.0033 10 1 6.7042 5.2300 -0.5723 11 6 6.4279 5.9186 1.4398 12 6 7.6430 6.8584 1.5233 13 6 7.2267 8.1797 0.9152 14 1 6.3248 8.5512 1.4018 15 6 8.2735 9.2844 0.8512 16 7 8.0033 10.0267 -0.4033 17 6 8.6696 11.1433 -0.8323 18 1 8.3944 11.6109 -1.7662 19 6 9.6985 11.6746 -0.0668 20 7 10.0333 11.1053 1.0717 21 14 10.6070 13.1984 -0.6517 22 1 9.9267 14.4110 -0.1302 23 1 12.0056 13.1626 -0.1537 24 1 10.6110 13.2329 -2.1363 25 6 6.8870 9.3526 -1.1170 26 6 6.9450 7.9159 -0.5923 27 1 7.7616 7.3690 -1.0638 28 6 5.6600 7.1140 -0.6600 29 8 2.2758 3.2802 0.0060 30 7 1.4686 2.3805 0.0001 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3633 0.5139 0.8900 34 1 4.2442 0.7263 0.0014 35 1 3.8481 5.4028 0.0029 36 1 5.6189 6.3286 2.0444 37 1 6.7063 4.9414 1.8344 38 1 7.9292 7.0042 2.5649 39 1 8.4777 6.4375 0.9629 40 1 9.2740 8.8531 0.8247 41 1 8.1723 9.9483 1.7099 42 1 10.7520 11.4768 1.6069 43 1 7.0510 9.3749 -2.1944 44 1 5.9335 9.8159 -0.8631 45 1 5.3679 6.9668 -1.6997 46 1 4.8674 7.6332 -0.1212 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000979666354.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:18:37 Heat of formation + Delta-G solvation = -2.952357 kcal Electronic energy + Delta-G solvation = -28621.470045 eV Core-core repulsion = 24514.888287 eV Total energy + Delta-G solvation = -4106.581758 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -46.13191 -41.38542 -40.18252 -39.94351 -37.19287 -35.16168 -34.34565 -33.65554 -32.96747 -31.92749 -30.36096 -28.62714 -27.84190 -26.89004 -25.06302 -24.46760 -23.51221 -22.29048 -21.68528 -21.35933 -20.99098 -20.01573 -19.10650 -18.73462 -17.97401 -17.36303 -17.20146 -16.80561 -16.61438 -16.07589 -16.01178 -15.83348 -15.59695 -15.41044 -15.10806 -14.82885 -14.69239 -14.09094 -13.64302 -13.51974 -13.33177 -13.24208 -13.13430 -12.91361 -12.87219 -12.73248 -12.58977 -12.54715 -12.10503 -11.92569 -11.74191 -11.72197 -11.60761 -11.35155 -11.09418 -11.02851 -10.82383 -10.66689 -10.47254 -10.13996 -8.85111 -7.80910 -5.15467 -0.39545 0.93635 1.39191 1.46685 1.48626 1.56894 1.57191 1.83525 2.24038 2.52003 2.95590 3.37130 3.57326 3.62166 3.68585 3.70757 3.79348 3.97469 4.00046 4.16592 4.24716 4.27701 4.41011 4.48185 4.51176 4.58195 4.58632 4.64226 4.71390 4.76571 4.84060 4.98695 5.07794 5.10758 5.15586 5.23723 5.30135 5.38159 5.44987 5.51288 5.61014 5.80167 5.82217 5.86736 6.21961 6.25965 6.86531 6.94449 7.12697 7.80155 8.47267 9.29602 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.042895 B = 0.001922 C = 0.001883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 652.599763 B =14565.496228 C =14866.964303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.291 6.291 3 C 0.199 3.801 4 C -0.154 4.154 5 C -0.056 4.056 6 C 0.610 3.390 7 O -0.539 6.539 8 N -0.691 5.691 9 C 0.155 3.845 10 H 0.079 0.921 11 C -0.116 4.116 12 C -0.092 4.092 13 C -0.106 4.106 14 H 0.076 0.924 15 C 0.196 3.804 16 N -0.635 5.635 17 C -0.238 4.238 18 H 0.082 0.918 19 C -0.071 4.071 20 N -0.952 5.952 21 Si 0.977 3.023 22 H -0.286 1.286 23 H -0.296 1.296 24 H -0.269 1.269 25 C 0.137 3.863 26 C -0.089 4.089 27 H 0.066 0.934 28 C -0.096 4.096 29 O 0.124 5.876 30 N -0.399 5.399 31 H 0.061 0.939 32 H 0.136 0.864 33 H 0.061 0.939 34 H 0.202 0.798 35 H 0.422 0.578 36 H 0.079 0.921 37 H 0.064 0.936 38 H 0.065 0.935 39 H 0.055 0.945 40 H 0.000 1.000 41 H 0.009 0.991 42 H 0.245 0.755 43 H 0.042 0.958 44 H 0.034 0.966 45 H 0.089 0.911 46 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.304 -21.346 -1.492 29.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.197 6.197 3 C 0.002 3.998 4 C -0.177 4.177 5 C -0.122 4.122 6 C 0.393 3.607 7 O -0.417 6.417 8 N -0.342 5.342 9 C 0.051 3.949 10 H 0.097 0.903 11 C -0.154 4.154 12 C -0.130 4.130 13 C -0.125 4.125 14 H 0.094 0.906 15 C 0.071 3.929 16 N -0.362 5.362 17 C -0.367 4.367 18 H 0.100 0.900 19 C -0.264 4.264 20 N -0.602 5.602 21 Si 0.805 3.195 22 H -0.213 1.213 23 H -0.223 1.223 24 H -0.194 1.194 25 C 0.013 3.987 26 C -0.109 4.109 27 H 0.084 0.916 28 C -0.134 4.134 29 O 0.057 5.943 30 N -0.122 5.122 31 H 0.080 0.920 32 H 0.154 0.846 33 H 0.080 0.920 34 H 0.219 0.781 35 H 0.260 0.740 36 H 0.097 0.903 37 H 0.083 0.917 38 H 0.084 0.916 39 H 0.073 0.927 40 H 0.018 0.982 41 H 0.028 0.972 42 H 0.054 0.946 43 H 0.061 0.939 44 H 0.052 0.948 45 H 0.107 0.893 46 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -20.553 -21.507 -1.459 29.784 hybrid contribution 1.058 0.873 0.017 1.371 sum -19.495 -20.634 -1.442 28.424 Atomic orbital electron populations 1.23387 0.74788 1.06318 1.02561 1.86233 1.24546 1.19849 1.89114 1.22058 0.90917 0.86113 1.00703 1.22430 0.94749 0.95237 1.05279 1.23877 0.86821 0.93825 1.07662 1.16485 0.84784 0.82412 0.76977 1.90905 1.27651 1.71847 1.51261 1.45885 1.11494 1.04495 1.72327 1.21054 0.85727 0.91321 0.96823 0.90297 1.21820 0.97917 0.99475 0.96232 1.21111 0.97611 0.93460 1.00848 1.21966 0.99010 0.94980 0.96516 0.90573 1.20547 0.94170 0.90493 0.87644 1.45468 1.38357 1.30180 1.22153 1.19488 1.11201 1.02144 1.03889 0.90008 1.25640 1.00531 1.02618 0.97570 1.70202 1.32475 1.42597 1.14927 0.85099 0.77242 0.79213 0.77928 1.21340 1.22296 1.19375 1.21506 0.90381 0.91453 0.95355 1.21845 0.98345 0.94953 0.95795 0.91597 1.21509 0.96849 0.92930 1.02145 1.84940 1.11552 1.29450 1.68395 1.73981 1.16023 0.97056 1.25175 0.91985 0.84635 0.92005 0.78075 0.74020 0.90254 0.91746 0.91618 0.92661 0.98204 0.97231 0.94612 0.93941 0.94833 0.89284 0.89139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 10.73 113.37 1.22 1.43 16 2 O -0.29 -4.65 10.57 -90.52 -0.96 -5.60 16 3 C 0.20 3.57 8.00 85.78 0.69 4.26 16 4 C -0.15 -2.62 10.97 22.80 0.25 -2.37 16 5 C -0.06 -0.96 7.29 24.36 0.18 -0.78 16 6 C 0.61 11.93 7.77 86.70 0.67 12.61 16 7 O -0.54 -14.29 16.54 -3.98 -0.07 -14.36 16 8 N -0.69 -10.94 5.03 -445.13 -2.24 -13.18 16 9 C 0.15 3.10 2.45 45.11 0.11 3.21 16 10 H 0.08 1.88 7.52 -2.39 -0.02 1.86 16 11 C -0.12 -2.55 5.38 30.72 0.17 -2.39 16 12 C -0.09 -2.64 5.69 30.32 0.17 -2.47 16 13 C -0.11 -3.63 2.30 -10.67 -0.02 -3.65 16 14 H 0.08 2.46 7.94 -2.39 -0.02 2.44 16 15 C 0.20 9.65 5.07 85.82 0.43 10.08 16 16 N -0.63 -32.58 3.45 -693.06 -2.39 -34.98 16 17 C -0.24 -13.47 10.30 84.03 0.87 -12.61 16 18 H 0.08 4.41 7.83 -2.91 -0.02 4.38 16 19 C -0.07 -4.11 5.49 84.86 0.47 -3.64 16 20 N -0.95 -58.34 10.36 21.65 0.22 -58.12 16 21 Si 0.98 46.41 29.55 68.60 2.03 48.44 16 22 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 23 H -0.30 -14.21 7.11 99.48 0.71 -13.51 16 24 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 25 C 0.14 5.29 6.90 85.98 0.59 5.88 16 26 C -0.09 -2.75 2.47 -10.32 -0.03 -2.78 16 27 H 0.07 2.20 8.06 -2.39 -0.02 2.18 16 28 C -0.10 -1.93 5.16 30.42 0.16 -1.78 16 29 O 0.12 2.08 11.03 65.70 0.72 2.80 16 30 N -0.40 -7.40 11.50 -172.02 -1.98 -9.38 16 31 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 32 H 0.14 0.44 8.14 -2.39 -0.02 0.42 16 33 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 34 H 0.20 2.84 8.06 -2.91 -0.02 2.81 16 35 H 0.42 4.38 8.43 -92.71 -0.78 3.60 16 36 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 37 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 38 H 0.07 1.89 8.14 -2.38 -0.02 1.87 16 39 H 0.05 1.71 8.06 -2.39 -0.02 1.69 16 40 H 0.00 -0.02 7.60 -2.39 -0.02 -0.03 16 41 H 0.01 0.53 7.30 -2.38 -0.02 0.51 16 42 H 0.24 14.61 8.31 -92.71 -0.77 13.84 16 43 H 0.04 1.60 8.14 -2.38 -0.02 1.58 16 44 H 0.03 1.23 8.14 -2.38 -0.02 1.21 16 45 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 46 H 0.09 1.56 7.99 -2.39 -0.02 1.54 16 Total: -1.00 -72.89 375.69 1.48 -71.41 By element: Atomic # 1 Polarization: 7.73 SS G_CDS: 0.22 Total: 7.94 kcal Atomic # 6 Polarization: -0.90 SS G_CDS: 5.92 Total: 5.01 kcal Atomic # 7 Polarization: -109.27 SS G_CDS: -6.38 Total: -115.65 kcal Atomic # 8 Polarization: -16.86 SS G_CDS: -0.30 Total: -17.16 kcal Atomic # 14 Polarization: 46.41 SS G_CDS: 2.03 Total: 48.44 kcal Total: -72.89 1.48 -71.41 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000979666354.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.459 kcal (2) G-P(sol) polarization free energy of solvation -72.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.411 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds