Wall clock time and date at job start Tue Mar 31 2020 18:27:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 O 1.20916 * 124.56832 * 2 1 4 4 C 1.34164 * 112.19393 * 180.12953 * 3 2 1 5 5 C 1.48210 * 126.38848 * 179.84555 * 4 3 2 6 6 O 1.21495 * 120.00069 * 179.68650 * 5 4 3 7 7 N 1.34776 * 119.99767 * 359.69421 * 5 4 3 8 8 C 1.46500 * 120.00215 * 179.97438 * 7 5 4 9 9 H 1.09008 * 108.96571 * 33.91623 * 8 7 5 10 10 C 1.52532 * 109.04030 * 275.00047 * 8 7 5 11 11 C 1.53814 * 111.69737 * 185.39278 * 10 8 7 12 12 C 1.51611 * 107.02613 * 57.53498 * 11 10 8 13 13 H 1.09000 * 110.50377 * 55.20301 * 12 11 10 14 14 C 1.53069 * 116.67709 * 183.73757 * 12 11 10 15 15 N 1.48663 * 103.44245 * 155.88793 * 14 12 11 16 16 C 1.36936 * 125.78068 * 155.62022 * 15 14 12 17 17 H 1.08006 * 119.99681 * 180.02562 * 16 15 14 18 18 C 1.38813 * 120.00276 * 0.02954 * 16 15 14 19 19 N 1.31614 * 119.99586 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 119.99924 * 179.97438 * 18 16 15 21 21 H 1.48494 * 109.47110 * 59.99875 * 20 18 16 22 22 H 1.48495 * 109.46662 * 180.02562 * 20 18 16 23 23 H 1.48499 * 109.46987 * 299.99707 * 20 18 16 24 24 C 1.48241 * 108.43286 * 335.62485 * 15 14 12 25 25 C 1.52331 * 105.86652 * 356.81183 * 24 15 14 26 26 H 1.09002 * 109.88407 * 272.33040 * 25 24 15 27 27 C 1.51438 * 117.81385 * 145.49541 * 25 24 15 28 28 C 1.36319 * 107.23066 * 359.58555 * 4 3 2 29 29 C 1.34829 * 124.56637 * 179.66935 * 2 1 3 30 30 O 1.21979 * 127.14877 * 359.97438 * 29 2 1 31 31 H 1.09006 * 109.47025 * 270.33604 * 1 2 3 32 32 H 1.08997 * 109.46922 * 30.33020 * 1 2 3 33 33 H 1.08999 * 109.47437 * 150.33496 * 1 2 3 34 34 H 0.97006 * 119.99978 * 359.97438 * 7 5 4 35 35 H 1.08998 * 109.03509 * 64.81882 * 10 8 7 36 36 H 1.09001 * 108.97356 * 305.91874 * 10 8 7 37 37 H 1.09006 * 109.94399 * 298.15126 * 11 10 8 38 38 H 1.09005 * 110.01375 * 176.95717 * 11 10 8 39 39 H 1.08995 * 110.62672 * 274.38028 * 14 12 11 40 40 H 1.09006 * 110.62283 * 37.40420 * 14 12 11 41 41 H 0.97009 * 119.99596 * 179.97438 * 19 18 16 42 42 H 1.08998 * 110.17074 * 237.71591 * 24 15 14 43 43 H 1.08999 * 110.17363 * 115.90868 * 24 15 14 44 44 H 1.09001 * 109.94240 * 300.41174 * 27 25 24 45 45 H 1.09001 * 109.93894 * 61.64423 * 27 25 24 46 46 H 1.08003 * 127.99867 * 180.20695 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 8 2.1511 0.9957 0.0000 4 6 3.4615 0.7082 -0.0028 5 6 4.5761 1.6851 -0.0068 6 8 5.7264 1.2944 -0.0034 7 7 4.3134 3.0070 -0.0142 8 6 5.4149 3.9728 -0.0176 9 1 6.2462 3.5601 -0.5894 10 6 5.8698 4.2139 1.4182 11 6 6.9365 5.3191 1.4988 12 6 6.3299 6.5670 0.8876 13 1 5.3914 6.8170 1.3824 14 6 7.2431 7.7902 0.7738 15 7 6.6352 8.5734 -0.3339 16 6 6.7651 9.9231 -0.5253 17 1 6.2806 10.3984 -1.3654 18 6 7.5196 10.6804 0.3603 19 7 8.1096 10.1011 1.3843 20 14 7.6973 12.5214 0.0986 21 1 6.3563 13.1582 0.1342 22 1 8.5467 13.0943 1.1736 23 1 8.3309 12.7750 -1.2203 24 6 5.8645 7.6459 -1.1959 25 6 6.0914 6.2548 -0.6181 26 1 6.9891 5.8148 -1.0526 27 6 4.9473 5.2652 -0.6884 28 6 3.5770 -0.6501 0.0047 29 6 2.2300 -1.1103 0.0064 30 8 1.8473 -2.2684 0.0135 31 1 -0.3633 0.0060 1.0277 32 1 -0.3633 0.8870 -0.5189 33 1 -0.3634 -0.8929 -0.5086 34 1 3.3948 3.3190 -0.0173 35 1 6.2847 3.2894 1.8197 36 1 5.0083 4.5069 2.0183 37 1 7.8222 5.0227 0.9368 38 1 7.2021 5.5061 2.5393 39 1 7.2334 8.3641 1.7004 40 1 8.2589 7.4884 0.5183 41 1 8.6372 10.6302 2.0029 42 1 6.2327 7.6918 -2.2208 43 1 4.8044 7.8973 -1.1651 44 1 4.0823 5.6584 -0.1542 45 1 4.6864 5.0718 -1.7289 46 1 4.4813 -1.2405 0.0081 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000979680554.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:13 Heat of formation + Delta-G solvation = 37.264226 kcal Electronic energy + Delta-G solvation = -28887.756732 eV Core-core repulsion = 24782.918896 eV Total energy + Delta-G solvation = -4104.837836 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -45.51832 -40.52431 -39.03842 -38.53632 -35.98412 -34.77969 -33.73895 -32.64367 -31.92196 -30.84914 -29.14304 -28.23594 -26.36087 -25.23220 -24.15503 -23.68004 -22.13222 -21.11189 -20.67378 -19.82153 -19.56618 -19.01687 -18.81861 -17.65868 -16.76466 -16.54408 -15.74593 -15.46140 -15.36078 -14.95316 -14.63568 -14.40577 -14.32298 -14.13289 -14.06057 -13.84435 -13.82312 -13.37900 -13.36702 -12.55778 -12.38733 -12.16799 -11.99730 -11.75157 -11.39502 -11.02647 -10.91527 -10.88262 -10.69628 -10.61046 -10.51311 -10.43089 -10.09751 -9.98419 -9.94690 -9.68768 -9.43283 -9.16693 -8.95280 -8.66366 -6.84391 -5.65366 -3.06399 0.12848 1.14301 2.17692 2.33464 2.60993 2.96930 3.39732 3.44028 3.45343 4.11696 4.26263 4.46940 4.56053 4.58574 4.61975 4.69450 4.77073 4.89858 5.06863 5.24933 5.27685 5.38709 5.41665 5.44581 5.53947 5.54675 5.58370 5.69443 5.89569 6.01134 6.05594 6.16024 6.20583 6.25038 6.32942 6.49827 6.58334 6.63791 6.80793 6.87415 7.00013 7.19707 7.51001 7.52972 7.56077 7.60336 7.85053 8.32768 9.19811 9.81065 10.47519 11.39014 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.032513 B = 0.002059 C = 0.001996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 860.978548 B =13595.044649 C =14026.904614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.106 3.894 2 N -0.453 5.453 3 O -0.003 6.003 4 C 0.033 3.967 5 C 0.601 3.399 6 O -0.493 6.493 7 N -0.705 5.705 8 C 0.147 3.853 9 H 0.092 0.908 10 C -0.126 4.126 11 C -0.099 4.099 12 C -0.116 4.116 13 H 0.069 0.931 14 C 0.163 3.837 15 N -0.608 5.608 16 C -0.221 4.221 17 H 0.076 0.924 18 C -0.012 4.012 19 N -0.923 5.923 20 Si 0.914 3.086 21 H -0.286 1.286 22 H -0.290 1.290 23 H -0.286 1.286 24 C 0.146 3.854 25 C -0.104 4.104 26 H 0.071 0.929 27 C -0.107 4.107 28 C -0.237 4.237 29 C 0.480 3.520 30 O -0.522 6.522 31 H 0.082 0.918 32 H 0.094 0.906 33 H 0.106 0.894 34 H 0.407 0.593 35 H 0.063 0.937 36 H 0.062 0.938 37 H 0.064 0.936 38 H 0.068 0.932 39 H 0.104 0.896 40 H 0.014 0.986 41 H 0.252 0.748 42 H 0.024 0.976 43 H 0.022 0.978 44 H 0.070 0.930 45 H 0.067 0.933 46 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.888 -18.071 -1.509 22.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.030 4.030 2 N -0.217 5.217 3 O -0.015 6.015 4 C -0.026 4.026 5 C 0.383 3.617 6 O -0.368 6.368 7 N -0.355 5.355 8 C 0.044 3.956 9 H 0.110 0.890 10 C -0.165 4.165 11 C -0.137 4.137 12 C -0.136 4.136 13 H 0.088 0.912 14 C 0.039 3.961 15 N -0.335 5.335 16 C -0.350 4.350 17 H 0.094 0.906 18 C -0.208 4.208 19 N -0.571 5.571 20 Si 0.744 3.256 21 H -0.212 1.212 22 H -0.216 1.216 23 H -0.213 1.213 24 C 0.020 3.980 25 C -0.124 4.124 26 H 0.090 0.910 27 C -0.145 4.145 28 C -0.262 4.262 29 C 0.278 3.722 30 O -0.403 6.403 31 H 0.100 0.900 32 H 0.113 0.887 33 H 0.124 0.876 34 H 0.242 0.758 35 H 0.082 0.918 36 H 0.081 0.919 37 H 0.083 0.917 38 H 0.086 0.914 39 H 0.122 0.878 40 H 0.032 0.968 41 H 0.063 0.937 42 H 0.042 0.958 43 H 0.040 0.960 44 H 0.089 0.911 45 H 0.086 0.914 46 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -13.462 -18.563 -1.418 22.974 hybrid contribution -0.333 1.051 -0.187 1.119 sum -13.795 -17.512 -1.605 22.351 Atomic orbital electron populations 1.22162 0.70505 1.05758 1.04585 1.46073 1.05915 0.99845 1.69831 1.83988 1.15233 1.21110 1.81164 1.23512 0.81605 0.96447 1.00990 1.16708 0.85416 0.81589 0.78036 1.90916 1.18166 1.78466 1.49205 1.46177 1.11646 1.04820 1.72868 1.21142 0.88667 0.88027 0.97798 0.88980 1.21926 0.99707 0.99683 0.95162 1.21254 0.97184 0.93794 1.01481 1.22424 1.00914 0.96156 0.94066 0.91225 1.21634 0.91565 0.88109 0.94775 1.45119 1.57851 1.03226 1.27283 1.19032 1.25910 0.81620 1.08406 0.90628 1.24774 1.00026 0.98229 0.97753 1.69801 1.37432 1.33736 1.16152 0.86166 0.77508 0.84830 0.77071 1.21226 1.21598 1.21271 1.20926 0.95137 0.88111 0.93811 1.21703 0.97299 0.95081 0.98318 0.91040 1.21376 0.99275 0.93601 1.00263 1.23359 0.99735 0.93396 1.09663 1.18358 0.86720 0.85551 0.81526 1.90978 1.79031 1.15860 1.54417 0.89992 0.88696 0.87590 0.75842 0.91789 0.91897 0.91701 0.91379 0.87799 0.96807 0.93728 0.95752 0.96015 0.91136 0.91384 0.78899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.42 11.22 59.85 0.67 1.09 16 2 N -0.45 -3.64 3.68 -69.77 -0.26 -3.89 16 3 O 0.00 -0.03 10.69 16.85 0.18 0.15 16 4 C 0.03 0.29 7.25 -36.18 -0.26 0.03 16 5 C 0.60 6.10 7.80 -12.16 -0.09 6.00 16 6 O -0.49 -6.58 16.52 5.37 0.09 -6.50 16 7 N -0.71 -6.11 5.03 -54.90 -0.28 -6.38 16 8 C 0.15 1.58 2.43 -68.21 -0.17 1.41 16 9 H 0.09 1.12 7.51 -51.92 -0.39 0.73 16 10 C -0.13 -1.47 5.37 -26.55 -0.14 -1.61 16 11 C -0.10 -1.39 5.71 -27.01 -0.15 -1.55 16 12 C -0.12 -1.99 2.50 -89.89 -0.22 -2.22 16 13 H 0.07 1.22 8.02 -51.93 -0.42 0.80 16 14 C 0.16 3.79 5.53 -2.81 -0.02 3.77 16 15 N -0.61 -15.15 3.45 -170.41 -0.59 -15.74 16 16 C -0.22 -6.07 10.30 -15.06 -0.16 -6.22 16 17 H 0.08 2.00 7.83 -52.48 -0.41 1.59 16 18 C -0.01 -0.34 5.49 -17.43 -0.10 -0.44 16 19 N -0.92 -26.49 10.11 55.49 0.56 -25.93 16 20 Si 0.91 21.80 29.55 -169.99 -5.02 16.78 16 21 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 22 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 23 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 24 C 0.15 2.87 6.99 -3.43 -0.02 2.84 16 25 C -0.10 -1.64 2.30 -90.36 -0.21 -1.84 16 26 H 0.07 1.15 7.93 -51.93 -0.41 0.74 16 27 C -0.11 -1.21 5.12 -27.56 -0.14 -1.36 16 28 C -0.24 -2.33 10.94 -38.70 -0.42 -2.75 16 29 C 0.48 5.29 8.02 -14.66 -0.12 5.17 16 30 O -0.52 -7.43 17.84 4.94 0.09 -7.34 16 31 H 0.08 0.23 8.14 -51.93 -0.42 -0.20 16 32 H 0.09 0.16 8.14 -51.93 -0.42 -0.27 16 33 H 0.11 0.40 8.03 -51.93 -0.42 -0.02 16 34 H 0.41 2.54 8.42 -40.82 -0.34 2.19 16 35 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.06 0.93 7.99 -51.93 -0.41 0.52 16 38 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 39 H 0.10 2.74 5.93 -51.93 -0.31 2.44 16 40 H 0.01 0.35 8.14 -51.93 -0.42 -0.08 16 41 H 0.25 7.05 8.31 -40.82 -0.34 6.72 16 42 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.02 0.42 8.09 -51.93 -0.42 0.00 16 44 H 0.07 0.76 8.04 -51.93 -0.42 0.35 16 45 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 46 H 0.19 1.71 8.06 -52.48 -0.42 1.29 16 LS Contribution 374.45 15.07 5.64 5.64 Total: -1.00 -33.82 374.45 -8.03 -41.85 By element: Atomic # 1 Polarization: 5.93 SS G_CDS: -6.89 Total: -0.96 kcal Atomic # 6 Polarization: 3.88 SS G_CDS: -1.55 Total: 2.32 kcal Atomic # 7 Polarization: -51.39 SS G_CDS: -0.56 Total: -51.95 kcal Atomic # 8 Polarization: -14.04 SS G_CDS: 0.36 Total: -13.68 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -33.82 -8.03 -41.85 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000979680554.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.111 kcal (2) G-P(sol) polarization free energy of solvation -33.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.847 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds