Wall clock time and date at job start Tue Mar 31 2020 18:27:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 O 1.20916 * 124.56832 * 2 1 4 4 C 1.34164 * 112.19393 * 180.12953 * 3 2 1 5 5 C 1.48210 * 126.38848 * 179.84555 * 4 3 2 6 6 O 1.21495 * 120.00069 * 179.68650 * 5 4 3 7 7 N 1.34776 * 119.99767 * 359.69421 * 5 4 3 8 8 C 1.46500 * 120.00215 * 179.97438 * 7 5 4 9 9 H 1.09008 * 108.96571 * 33.91623 * 8 7 5 10 10 C 1.52532 * 109.04030 * 275.00047 * 8 7 5 11 11 C 1.53814 * 111.69737 * 185.39278 * 10 8 7 12 12 C 1.51611 * 107.02613 * 57.53498 * 11 10 8 13 13 H 1.09000 * 110.50377 * 55.20301 * 12 11 10 14 14 C 1.53069 * 116.67709 * 183.73757 * 12 11 10 15 15 N 1.48663 * 103.44245 * 155.88793 * 14 12 11 16 16 C 1.36936 * 125.78068 * 155.62022 * 15 14 12 17 17 H 1.08006 * 119.99681 * 180.02562 * 16 15 14 18 18 C 1.38813 * 120.00276 * 0.02954 * 16 15 14 19 19 N 1.31614 * 119.99586 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 119.99924 * 179.97438 * 18 16 15 21 21 H 1.48494 * 109.47110 * 59.99875 * 20 18 16 22 22 H 1.48495 * 109.46662 * 180.02562 * 20 18 16 23 23 H 1.48499 * 109.46987 * 299.99707 * 20 18 16 24 24 C 1.48241 * 108.43286 * 335.62485 * 15 14 12 25 25 C 1.52331 * 105.86652 * 356.81183 * 24 15 14 26 26 H 1.09002 * 109.88407 * 272.33040 * 25 24 15 27 27 C 1.51438 * 117.81385 * 145.49541 * 25 24 15 28 28 C 1.36319 * 107.23066 * 359.58555 * 4 3 2 29 29 C 1.34829 * 124.56637 * 179.66935 * 2 1 3 30 30 O 1.21979 * 127.14877 * 359.97438 * 29 2 1 31 31 H 1.09006 * 109.47025 * 270.33604 * 1 2 3 32 32 H 1.08997 * 109.46922 * 30.33020 * 1 2 3 33 33 H 1.08999 * 109.47437 * 150.33496 * 1 2 3 34 34 H 0.97006 * 119.99978 * 359.97438 * 7 5 4 35 35 H 1.08998 * 109.03509 * 64.81882 * 10 8 7 36 36 H 1.09001 * 108.97356 * 305.91874 * 10 8 7 37 37 H 1.09006 * 109.94399 * 298.15126 * 11 10 8 38 38 H 1.09005 * 110.01375 * 176.95717 * 11 10 8 39 39 H 1.08995 * 110.62672 * 274.38028 * 14 12 11 40 40 H 1.09006 * 110.62283 * 37.40420 * 14 12 11 41 41 H 0.97009 * 119.99596 * 179.97438 * 19 18 16 42 42 H 1.08998 * 110.17074 * 237.71591 * 24 15 14 43 43 H 1.08999 * 110.17363 * 115.90868 * 24 15 14 44 44 H 1.09001 * 109.94240 * 300.41174 * 27 25 24 45 45 H 1.09001 * 109.93894 * 61.64423 * 27 25 24 46 46 H 1.08003 * 127.99867 * 180.20695 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 8 2.1511 0.9957 0.0000 4 6 3.4615 0.7082 -0.0028 5 6 4.5761 1.6851 -0.0068 6 8 5.7264 1.2944 -0.0034 7 7 4.3134 3.0070 -0.0142 8 6 5.4149 3.9728 -0.0176 9 1 6.2462 3.5601 -0.5894 10 6 5.8698 4.2139 1.4182 11 6 6.9365 5.3191 1.4988 12 6 6.3299 6.5670 0.8876 13 1 5.3914 6.8170 1.3824 14 6 7.2431 7.7902 0.7738 15 7 6.6352 8.5734 -0.3339 16 6 6.7651 9.9231 -0.5253 17 1 6.2806 10.3984 -1.3654 18 6 7.5196 10.6804 0.3603 19 7 8.1096 10.1011 1.3843 20 14 7.6973 12.5214 0.0986 21 1 6.3563 13.1582 0.1342 22 1 8.5467 13.0943 1.1736 23 1 8.3309 12.7750 -1.2203 24 6 5.8645 7.6459 -1.1959 25 6 6.0914 6.2548 -0.6181 26 1 6.9891 5.8148 -1.0526 27 6 4.9473 5.2652 -0.6884 28 6 3.5770 -0.6501 0.0047 29 6 2.2300 -1.1103 0.0064 30 8 1.8473 -2.2684 0.0135 31 1 -0.3633 0.0060 1.0277 32 1 -0.3633 0.8870 -0.5189 33 1 -0.3634 -0.8929 -0.5086 34 1 3.3948 3.3190 -0.0173 35 1 6.2847 3.2894 1.8197 36 1 5.0083 4.5069 2.0183 37 1 7.8222 5.0227 0.9368 38 1 7.2021 5.5061 2.5393 39 1 7.2334 8.3641 1.7004 40 1 8.2589 7.4884 0.5183 41 1 8.6372 10.6302 2.0029 42 1 6.2327 7.6918 -2.2208 43 1 4.8044 7.8973 -1.1651 44 1 4.0823 5.6584 -0.1542 45 1 4.6864 5.0718 -1.7289 46 1 4.4813 -1.2405 0.0081 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000979680554.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:13 Heat of formation + Delta-G solvation = 14.477766 kcal Electronic energy + Delta-G solvation = -28888.744827 eV Core-core repulsion = 24782.918896 eV Total energy + Delta-G solvation = -4105.825931 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -46.24167 -41.48516 -40.25205 -39.37310 -37.26188 -35.47763 -35.07562 -33.54154 -33.40243 -32.08659 -30.57625 -29.02264 -27.75424 -26.82311 -24.99970 -24.48162 -23.54424 -22.08999 -21.66023 -21.36338 -20.76448 -19.80380 -19.50526 -18.76310 -18.34464 -17.42539 -16.87807 -16.52393 -16.32261 -16.17022 -15.81587 -15.60322 -15.53479 -15.19457 -15.01837 -14.86174 -14.77130 -14.21013 -14.08779 -13.65304 -13.60977 -13.49314 -13.47660 -13.14046 -12.92046 -12.72159 -12.62875 -12.13393 -11.94826 -11.85848 -11.71133 -11.68678 -11.43194 -11.33681 -11.13761 -11.06635 -10.81513 -10.68715 -10.20937 -9.68300 -8.84786 -7.73862 -5.17279 -0.61901 0.51323 1.37173 1.47458 1.50457 1.55364 1.56874 1.82337 2.21633 2.51780 3.35343 3.37294 3.59114 3.62116 3.69075 3.72047 3.86284 3.99486 4.11856 4.28051 4.35160 4.37213 4.46405 4.49480 4.58965 4.64634 4.69920 4.70694 4.75537 4.81407 4.82139 4.99312 5.02919 5.04565 5.14156 5.23437 5.29144 5.36018 5.43484 5.49926 5.60674 5.79140 5.87944 6.13875 6.33101 6.44660 6.80132 6.83528 7.12535 7.80229 8.46528 9.28060 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.032513 B = 0.002059 C = 0.001996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 860.978548 B =13595.044649 C =14026.904614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.443 5.443 3 O 0.019 5.981 4 C 0.043 3.957 5 C 0.609 3.391 6 O -0.526 6.526 7 N -0.688 5.688 8 C 0.155 3.845 9 H 0.082 0.918 10 C -0.117 4.117 11 C -0.094 4.094 12 C -0.103 4.103 13 H 0.072 0.928 14 C 0.165 3.835 15 N -0.634 5.634 16 C -0.236 4.236 17 H 0.080 0.920 18 C -0.071 4.071 19 N -0.949 5.949 20 Si 0.978 3.022 21 H -0.276 1.276 22 H -0.295 1.295 23 H -0.280 1.280 24 C 0.139 3.861 25 C -0.090 4.090 26 H 0.066 0.934 27 C -0.095 4.095 28 C -0.248 4.248 29 C 0.467 3.533 30 O -0.567 6.567 31 H 0.098 0.902 32 H 0.125 0.875 33 H 0.106 0.894 34 H 0.423 0.577 35 H 0.065 0.935 36 H 0.077 0.923 37 H 0.058 0.942 38 H 0.066 0.934 39 H 0.067 0.933 40 H -0.016 1.016 41 H 0.245 0.755 42 H 0.023 0.977 43 H 0.034 0.966 44 H 0.086 0.914 45 H 0.090 0.910 46 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.307 -18.332 -2.167 24.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 N -0.203 5.203 3 O 0.006 5.994 4 C -0.016 4.016 5 C 0.391 3.609 6 O -0.403 6.403 7 N -0.339 5.339 8 C 0.051 3.949 9 H 0.100 0.900 10 C -0.156 4.156 11 C -0.133 4.133 12 C -0.122 4.122 13 H 0.091 0.909 14 C 0.041 3.959 15 N -0.361 5.361 16 C -0.365 4.365 17 H 0.098 0.902 18 C -0.263 4.263 19 N -0.599 5.599 20 Si 0.807 3.193 21 H -0.202 1.202 22 H -0.221 1.221 23 H -0.207 1.207 24 C 0.015 3.985 25 C -0.110 4.110 26 H 0.084 0.916 27 C -0.133 4.133 28 C -0.273 4.273 29 C 0.266 3.734 30 O -0.451 6.451 31 H 0.116 0.884 32 H 0.143 0.857 33 H 0.124 0.876 34 H 0.261 0.739 35 H 0.084 0.916 36 H 0.096 0.904 37 H 0.077 0.923 38 H 0.084 0.916 39 H 0.085 0.915 40 H 0.002 0.998 41 H 0.055 0.945 42 H 0.042 0.958 43 H 0.052 0.948 44 H 0.105 0.895 45 H 0.108 0.892 46 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -15.967 -18.808 -2.101 24.761 hybrid contribution 0.393 1.213 -0.013 1.275 sum -15.574 -17.595 -2.114 23.592 Atomic orbital electron populations 1.22608 0.67927 1.07312 1.06217 1.46361 1.07100 0.99188 1.67687 1.84012 1.14676 1.20635 1.80074 1.23154 0.81888 0.95666 1.00914 1.16651 0.85009 0.81839 0.77400 1.90917 1.19599 1.79025 1.50714 1.45908 1.12027 1.03918 1.72007 1.20888 0.89005 0.88080 0.96921 0.89983 1.21823 0.99211 0.98445 0.96117 1.21194 0.97842 0.93222 1.00998 1.22188 0.99451 0.94703 0.95901 0.90917 1.21393 0.91598 0.90135 0.92780 1.45490 1.58396 1.03377 1.28789 1.19426 1.25477 0.83308 1.08266 0.90229 1.25616 1.00379 1.02467 0.97861 1.70075 1.38165 1.34818 1.16892 0.85153 0.77588 0.79867 0.76740 1.20154 1.22146 1.20678 1.21131 0.94863 0.89362 0.93136 1.21582 0.99202 0.93997 0.96179 0.91574 1.21275 0.97715 0.92219 1.02092 1.23427 0.99678 0.93956 1.10264 1.18502 0.87367 0.85604 0.81919 1.90948 1.79735 1.17462 1.56991 0.88353 0.85674 0.87554 0.73919 0.91612 0.90430 0.92298 0.91550 0.91519 0.99846 0.94506 0.95847 0.94796 0.89495 0.89176 0.78663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.46 11.22 127.77 1.43 1.90 16 2 N -0.44 -5.99 3.68 -492.73 -1.82 -7.81 16 3 O 0.02 0.22 10.69 70.46 0.75 0.97 16 4 C 0.04 0.67 7.25 24.48 0.18 0.84 16 5 C 0.61 10.64 7.80 86.89 0.68 11.32 16 6 O -0.53 -13.07 16.52 -3.70 -0.06 -13.13 16 7 N -0.69 -9.22 5.03 -445.92 -2.24 -11.46 16 8 C 0.15 2.81 2.43 44.81 0.11 2.92 16 9 H 0.08 1.76 7.51 -2.38 -0.02 1.74 16 10 C -0.12 -2.41 5.37 30.71 0.17 -2.24 16 11 C -0.09 -2.56 5.71 30.41 0.17 -2.39 16 12 C -0.10 -3.46 2.50 -10.32 -0.03 -3.49 16 13 H 0.07 2.42 8.02 -2.39 -0.02 2.40 16 14 C 0.17 7.93 5.53 85.98 0.48 8.41 16 15 N -0.63 -32.02 3.45 -693.04 -2.39 -34.41 16 16 C -0.24 -13.10 10.30 84.03 0.87 -12.23 16 17 H 0.08 4.22 7.83 -2.91 -0.02 4.20 16 18 C -0.07 -4.01 5.49 84.86 0.47 -3.55 16 19 N -0.95 -56.53 10.11 21.65 0.22 -56.31 16 20 Si 0.98 45.42 29.55 68.60 2.03 47.45 16 21 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 22 H -0.30 -13.83 7.11 99.48 0.71 -13.12 16 23 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16 24 C 0.14 5.33 6.99 85.82 0.60 5.93 16 25 C -0.09 -2.66 2.30 -10.62 -0.02 -2.68 16 26 H 0.07 2.04 7.93 -2.39 -0.02 2.02 16 27 C -0.09 -1.79 5.12 30.06 0.15 -1.63 16 28 C -0.25 -4.61 10.94 22.84 0.25 -4.36 16 29 C 0.47 9.81 8.02 85.25 0.68 10.50 16 30 O -0.57 -16.18 17.84 -5.25 -0.09 -16.27 16 31 H 0.10 0.24 8.14 -2.38 -0.02 0.22 16 32 H 0.12 -0.11 8.14 -2.39 -0.02 -0.13 16 33 H 0.11 0.59 8.03 -2.39 -0.02 0.57 16 34 H 0.42 3.17 8.42 -92.70 -0.78 2.39 16 35 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 36 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 37 H 0.06 1.67 7.99 -2.38 -0.02 1.66 16 38 H 0.07 1.83 8.14 -2.38 -0.02 1.81 16 39 H 0.07 3.70 5.93 -2.39 -0.01 3.69 16 40 H -0.02 -0.87 8.14 -2.38 -0.02 -0.89 16 41 H 0.25 14.26 8.31 -92.70 -0.77 13.48 16 42 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 43 H 0.03 1.23 8.09 -2.39 -0.02 1.21 16 44 H 0.09 1.44 8.04 -2.39 -0.02 1.42 16 45 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 46 H 0.20 3.40 8.06 -2.91 -0.02 3.38 16 Total: -1.00 -76.92 374.45 2.79 -74.12 By element: Atomic # 1 Polarization: 7.38 SS G_CDS: 0.22 Total: 7.60 kcal Atomic # 6 Polarization: 3.07 SS G_CDS: 6.18 Total: 9.25 kcal Atomic # 7 Polarization: -103.77 SS G_CDS: -6.23 Total: -110.00 kcal Atomic # 8 Polarization: -29.02 SS G_CDS: 0.60 Total: -28.42 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 2.03 Total: 47.45 kcal Total: -76.92 2.79 -74.12 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000979680554.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.603 kcal (2) G-P(sol) polarization free energy of solvation -76.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.125 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds