Wall clock time and date at job start Tue Mar 31 2020 19:20:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.36010 * 116.99426 * 2 1 4 4 C 1.35848 * 120.32009 * 0.02562 * 3 2 1 5 5 N 1.35438 * 120.78033 * 179.72588 * 4 3 2 6 6 H 0.97002 * 119.29560 * 180.28008 * 5 4 3 7 7 C 1.36425 * 121.40959 * 0.51796 * 5 4 3 8 8 C 1.48076 * 119.71861 * 179.75662 * 7 5 4 9 9 O 1.21513 * 119.99624 * 179.72263 * 8 7 5 10 10 N 1.34772 * 120.00146 * 359.73069 * 8 7 5 11 11 C 1.46496 * 120.00151 * 180.02562 * 10 8 7 12 12 H 1.09002 * 109.47021 * 324.99552 * 11 10 8 13 13 C 1.53005 * 109.47414 * 84.99440 * 11 10 8 14 14 C 1.52997 * 109.47452 * 180.02562 * 13 11 10 15 15 C 1.53002 * 109.46817 * 300.00239 * 14 13 11 16 16 C 1.53000 * 109.47233 * 60.00194 * 15 14 13 17 17 H 1.09002 * 109.47398 * 59.99826 * 16 15 14 18 18 N 1.46500 * 109.47023 * 179.97438 * 16 15 14 19 19 C 1.36931 * 119.99971 * 274.99678 * 18 16 15 20 20 H 1.08005 * 120.00425 * 359.97438 * 19 18 16 21 21 C 1.38812 * 120.00390 * 180.02562 * 19 18 16 22 22 N 1.31624 * 119.99556 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 120.00553 * 180.02562 * 21 19 18 24 24 H 1.48504 * 109.47166 * 89.99808 * 23 21 19 25 25 H 1.48501 * 109.47423 * 210.00188 * 23 21 19 26 26 H 1.48508 * 109.46891 * 329.99990 * 23 21 19 27 27 C 1.52997 * 109.47060 * 299.99657 * 16 15 14 28 28 C 1.36182 * 120.56223 * 359.48019 * 7 5 4 29 29 C 1.41575 * 120.31124 * 179.97438 * 3 2 1 30 30 O 1.22264 * 120.65754 * 0.04208 * 29 3 2 31 31 H 1.08996 * 109.47182 * 60.00929 * 1 2 3 32 32 H 1.09004 * 109.46619 * 179.97438 * 1 2 3 33 33 H 1.08995 * 109.47343 * 300.00072 * 1 2 3 34 34 H 1.08000 * 119.60836 * 359.97438 * 4 3 2 35 35 H 0.96994 * 119.99727 * 359.97438 * 10 8 7 36 36 H 1.09001 * 109.46812 * 300.00401 * 13 11 10 37 37 H 1.09002 * 109.46935 * 60.00059 * 13 11 10 38 38 H 1.09002 * 109.46695 * 59.99734 * 14 13 11 39 39 H 1.08993 * 109.47194 * 179.97438 * 14 13 11 40 40 H 1.08992 * 109.47063 * 299.99823 * 15 14 13 41 41 H 1.09004 * 109.46733 * 179.97438 * 15 14 13 42 42 H 0.97004 * 120.00223 * 94.99655 * 18 16 15 43 43 H 0.96997 * 119.99679 * 179.97438 * 22 21 19 44 44 H 1.08996 * 109.47853 * 180.02562 * 27 16 15 45 45 H 1.09002 * 109.47153 * 300.00319 * 27 16 15 46 46 H 1.07994 * 120.40685 * 180.27231 * 28 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2119 0.0000 4 6 1.3127 2.3553 0.0005 5 7 1.9178 3.5670 0.0061 6 1 1.3730 4.3695 0.0105 7 6 3.2771 3.6830 0.0008 8 6 3.8992 5.0267 0.0018 9 8 5.1094 5.1359 0.0022 10 7 3.1231 6.1286 0.0023 11 6 3.7386 7.4580 0.0027 12 1 4.6552 7.4339 0.5920 13 6 4.0668 7.8685 -1.4343 14 6 4.7101 9.2567 -1.4338 15 6 3.7385 10.2688 -0.8235 16 6 3.4104 9.8584 0.6134 17 1 4.3271 9.8338 1.2027 18 7 2.4806 10.8279 1.1980 19 6 2.9593 11.9742 1.7740 20 1 4.0223 12.1635 1.7978 21 6 2.0783 12.8926 2.3284 22 7 0.7828 12.6618 2.2999 23 14 2.7312 14.4567 3.1136 24 1 2.8133 15.5282 2.0886 25 1 1.8165 14.8829 4.2031 26 1 4.0831 14.2026 3.6733 27 6 2.7671 8.4702 0.6130 28 6 4.0667 2.5735 0.0004 29 6 3.4597 1.2938 0.0005 30 8 4.1430 0.2799 0.0003 31 1 -0.3633 0.5137 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3634 0.5138 0.8899 34 1 0.2343 2.2973 0.0005 35 1 2.1571 6.0414 0.0017 36 1 4.7593 7.1476 -1.8689 37 1 3.1501 7.8927 -2.0236 38 1 5.6268 9.2320 -0.8446 39 1 4.9444 9.5489 -2.4574 40 1 2.8219 10.2934 -1.4127 41 1 4.1971 11.2577 -0.8228 42 1 1.5258 10.6578 1.1770 43 1 0.1673 13.3033 2.6876 44 1 2.5329 8.1779 1.6366 45 1 1.8504 8.4948 0.0238 46 1 5.1425 2.6682 0.0006 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981228730.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:20:38 Heat of formation + Delta-G solvation = -64.862653 kcal Electronic energy + Delta-G solvation = -28390.197166 eV Core-core repulsion = 24280.930777 eV Total energy + Delta-G solvation = -4109.266390 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.80676 -40.24331 -38.68336 -38.05641 -37.87345 -35.04696 -33.58340 -31.96890 -31.32068 -31.17772 -29.51007 -28.08952 -27.85417 -25.00136 -23.82538 -23.54628 -22.30824 -21.70497 -20.73072 -20.25820 -19.53805 -18.43712 -18.02470 -17.11183 -16.61067 -16.50056 -16.34285 -15.77147 -15.59518 -14.99691 -14.85314 -14.58931 -14.51130 -14.39546 -14.00539 -13.90238 -13.68690 -13.43238 -13.28048 -13.12875 -12.85071 -12.33065 -12.23612 -11.98782 -11.84031 -11.16743 -11.09244 -10.95770 -10.87459 -10.75687 -10.52307 -10.35571 -10.26049 -9.96197 -9.84409 -9.81607 -9.72298 -9.34297 -8.96707 -8.05727 -7.06455 -5.86025 -3.15002 0.29900 0.79455 2.13994 2.46943 2.47731 2.83770 3.36429 3.37779 3.43781 3.44716 3.93534 4.09255 4.24642 4.48394 4.51956 4.66954 4.67950 4.77756 4.88165 5.02777 5.10591 5.13780 5.34359 5.36329 5.43699 5.50017 5.56156 5.69985 5.76800 5.79988 5.85496 5.96909 6.02982 6.08682 6.15803 6.24800 6.30746 6.39118 6.44727 6.58514 6.78363 6.83858 6.98788 7.00441 7.61330 7.62838 7.69020 8.32617 9.44137 9.99820 10.34298 11.36601 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.019456 B = 0.002121 C = 0.001997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1438.835631 B =13198.678503 C =14015.104028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.288 6.288 3 C -0.032 4.032 4 C 0.028 3.972 5 N -0.564 5.564 6 H 0.420 0.580 7 C 0.124 3.876 8 C 0.557 3.443 9 O -0.500 6.500 10 N -0.715 5.715 11 C 0.148 3.852 12 H 0.095 0.905 13 C -0.125 4.125 14 C -0.115 4.115 15 C -0.138 4.138 16 C 0.184 3.816 17 H 0.050 0.950 18 N -0.724 5.724 19 C -0.239 4.239 20 H 0.071 0.929 21 C -0.013 4.013 22 N -0.934 5.934 23 Si 0.906 3.094 24 H -0.290 1.290 25 H -0.291 1.291 26 H -0.281 1.281 27 C -0.130 4.130 28 C -0.211 4.211 29 C 0.400 3.600 30 O -0.495 6.495 31 H 0.055 0.945 32 H 0.103 0.897 33 H 0.055 0.945 34 H 0.171 0.829 35 H 0.394 0.606 36 H 0.062 0.938 37 H 0.062 0.938 38 H 0.061 0.939 39 H 0.058 0.942 40 H 0.055 0.945 41 H 0.064 0.936 42 H 0.383 0.617 43 H 0.255 0.745 44 H 0.070 0.930 45 H 0.065 0.935 46 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.361 -19.754 -7.663 21.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.199 6.199 3 C -0.083 4.083 4 C -0.099 4.099 5 N -0.177 5.177 6 H 0.257 0.743 7 C 0.012 3.988 8 C 0.340 3.660 9 O -0.373 6.373 10 N -0.367 5.367 11 C 0.044 3.956 12 H 0.113 0.887 13 C -0.164 4.164 14 C -0.154 4.154 15 C -0.178 4.178 16 C 0.073 3.927 17 H 0.068 0.932 18 N -0.364 5.364 19 C -0.370 4.370 20 H 0.089 0.911 21 C -0.209 4.209 22 N -0.582 5.582 23 Si 0.737 3.263 24 H -0.217 1.217 25 H -0.218 1.218 26 H -0.207 1.207 27 C -0.169 4.169 28 C -0.238 4.238 29 C 0.289 3.711 30 O -0.378 6.378 31 H 0.073 0.927 32 H 0.122 0.878 33 H 0.074 0.926 34 H 0.188 0.812 35 H 0.228 0.772 36 H 0.081 0.919 37 H 0.081 0.919 38 H 0.080 0.920 39 H 0.077 0.923 40 H 0.074 0.926 41 H 0.083 0.917 42 H 0.216 0.784 43 H 0.065 0.935 44 H 0.089 0.911 45 H 0.084 0.916 46 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -1.926 -20.291 -7.547 21.734 hybrid contribution -1.362 1.424 0.375 2.006 sum -3.288 -18.867 -7.172 20.450 Atomic orbital electron populations 1.23154 0.78994 1.04649 1.01003 1.86288 1.20458 1.24234 1.88964 1.20434 0.94814 0.84738 1.08327 1.21648 0.98851 0.84073 1.05309 1.40687 1.05060 1.08537 1.63459 0.74287 1.20433 0.82848 0.95769 0.99745 1.17908 0.87230 0.82911 0.77964 1.90873 1.12824 1.85658 1.47971 1.46152 1.09625 1.06543 1.74331 1.21212 0.97667 0.79140 0.97564 0.88715 1.21899 1.00996 0.97789 0.95675 1.21486 0.99111 0.94008 1.00755 1.22309 0.98356 0.98537 0.98625 1.20090 0.93582 0.86773 0.92249 0.93200 1.42384 1.05050 1.20411 1.68574 1.19235 0.92277 0.96094 1.29372 0.91090 1.24741 0.95344 0.99083 1.01757 1.69653 1.00784 1.36918 1.50870 0.86199 0.77745 0.83543 0.78770 1.21691 1.21777 1.20696 1.22120 0.98190 0.95677 1.00937 1.22504 1.02400 0.90381 1.08498 1.16813 0.86154 0.89818 0.78301 1.90868 1.65706 1.37542 1.43722 0.92677 0.87813 0.92624 0.81204 0.77204 0.91919 0.91902 0.91991 0.92284 0.92630 0.91727 0.78364 0.93502 0.91117 0.91600 0.81258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.08 9.81 101.05 0.99 1.07 16 2 O -0.29 -2.93 10.33 -35.60 -0.37 -3.29 16 3 C -0.03 -0.32 6.71 -39.17 -0.26 -0.58 16 4 C 0.03 0.16 10.22 -16.82 -0.17 -0.01 16 5 N -0.56 -2.92 5.26 -9.58 -0.05 -2.97 16 6 H 0.42 0.81 7.00 -40.82 -0.29 0.52 16 7 C 0.12 1.08 6.77 -82.53 -0.56 0.52 16 8 C 0.56 5.71 7.77 -12.23 -0.09 5.61 16 9 O -0.50 -7.02 15.93 5.35 0.09 -6.94 16 10 N -0.72 -6.05 5.07 -54.68 -0.28 -6.33 16 11 C 0.15 1.66 2.45 -67.93 -0.17 1.50 16 12 H 0.09 1.24 7.58 -51.93 -0.39 0.85 16 13 C -0.13 -1.40 5.49 -26.73 -0.15 -1.55 16 14 C -0.11 -1.45 5.92 -26.73 -0.16 -1.60 16 15 C -0.14 -2.18 5.50 -26.73 -0.15 -2.33 16 16 C 0.18 3.21 2.77 -67.93 -0.19 3.02 16 17 H 0.05 0.92 8.08 -51.93 -0.42 0.50 16 18 N -0.72 -16.62 5.12 -53.43 -0.27 -16.90 16 19 C -0.24 -6.27 9.93 -15.06 -0.15 -6.42 16 20 H 0.07 1.83 7.83 -52.48 -0.41 1.41 16 21 C -0.01 -0.37 5.50 -17.43 -0.10 -0.46 16 22 N -0.93 -26.96 13.06 55.49 0.72 -26.24 16 23 Si 0.91 21.65 29.55 -169.99 -5.02 16.63 16 24 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 25 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 26 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 27 C -0.13 -1.72 4.86 -26.73 -0.13 -1.85 16 28 C -0.21 -2.35 9.53 -39.03 -0.37 -2.73 16 29 C 0.40 5.21 6.78 -37.02 -0.25 4.96 16 30 O -0.49 -8.50 17.71 -11.15 -0.20 -8.69 16 31 H 0.05 0.15 7.66 -51.93 -0.40 -0.25 16 32 H 0.10 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.06 0.16 7.66 -51.93 -0.40 -0.24 16 34 H 0.17 0.30 6.21 -52.49 -0.33 -0.02 16 35 H 0.39 2.02 6.82 -40.82 -0.28 1.74 16 36 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 40 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 41 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 42 H 0.38 9.31 7.80 -40.82 -0.32 8.99 16 43 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 44 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 45 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 46 H 0.17 1.99 7.57 -52.49 -0.40 1.59 16 LS Contribution 379.16 15.07 5.71 5.71 Total: -1.00 -35.89 379.16 -8.13 -44.03 By element: Atomic # 1 Polarization: 12.40 SS G_CDS: -6.56 Total: 5.83 kcal Atomic # 6 Polarization: 1.06 SS G_CDS: -1.90 Total: -0.84 kcal Atomic # 7 Polarization: -52.56 SS G_CDS: 0.12 Total: -52.44 kcal Atomic # 8 Polarization: -18.45 SS G_CDS: -0.48 Total: -18.93 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -35.89 -8.13 -44.03 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981228730.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.836 kcal (2) G-P(sol) polarization free energy of solvation -35.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds