Wall clock time and date at job start Tue Mar 31 2020 19:20:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.36010 * 116.99426 * 2 1 4 4 C 1.35848 * 120.32009 * 0.02562 * 3 2 1 5 5 N 1.35438 * 120.78033 * 179.72588 * 4 3 2 6 6 H 0.97002 * 119.29560 * 180.28008 * 5 4 3 7 7 C 1.36425 * 121.40959 * 0.51796 * 5 4 3 8 8 C 1.48076 * 119.71861 * 179.75662 * 7 5 4 9 9 O 1.21513 * 119.99624 * 179.72263 * 8 7 5 10 10 N 1.34772 * 120.00146 * 359.73069 * 8 7 5 11 11 C 1.46496 * 120.00151 * 180.02562 * 10 8 7 12 12 H 1.09002 * 109.47021 * 324.99552 * 11 10 8 13 13 C 1.53005 * 109.47414 * 84.99440 * 11 10 8 14 14 C 1.52997 * 109.47452 * 180.02562 * 13 11 10 15 15 C 1.53002 * 109.46817 * 300.00239 * 14 13 11 16 16 C 1.53000 * 109.47233 * 60.00194 * 15 14 13 17 17 H 1.09002 * 109.47398 * 59.99826 * 16 15 14 18 18 N 1.46500 * 109.47023 * 179.97438 * 16 15 14 19 19 C 1.36931 * 119.99971 * 274.99678 * 18 16 15 20 20 H 1.08005 * 120.00425 * 359.97438 * 19 18 16 21 21 C 1.38812 * 120.00390 * 180.02562 * 19 18 16 22 22 N 1.31624 * 119.99556 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 120.00553 * 180.02562 * 21 19 18 24 24 H 1.48504 * 109.47166 * 89.99808 * 23 21 19 25 25 H 1.48501 * 109.47423 * 210.00188 * 23 21 19 26 26 H 1.48508 * 109.46891 * 329.99990 * 23 21 19 27 27 C 1.52997 * 109.47060 * 299.99657 * 16 15 14 28 28 C 1.36182 * 120.56223 * 359.48019 * 7 5 4 29 29 C 1.41575 * 120.31124 * 179.97438 * 3 2 1 30 30 O 1.22264 * 120.65754 * 0.04208 * 29 3 2 31 31 H 1.08996 * 109.47182 * 60.00929 * 1 2 3 32 32 H 1.09004 * 109.46619 * 179.97438 * 1 2 3 33 33 H 1.08995 * 109.47343 * 300.00072 * 1 2 3 34 34 H 1.08000 * 119.60836 * 359.97438 * 4 3 2 35 35 H 0.96994 * 119.99727 * 359.97438 * 10 8 7 36 36 H 1.09001 * 109.46812 * 300.00401 * 13 11 10 37 37 H 1.09002 * 109.46935 * 60.00059 * 13 11 10 38 38 H 1.09002 * 109.46695 * 59.99734 * 14 13 11 39 39 H 1.08993 * 109.47194 * 179.97438 * 14 13 11 40 40 H 1.08992 * 109.47063 * 299.99823 * 15 14 13 41 41 H 1.09004 * 109.46733 * 179.97438 * 15 14 13 42 42 H 0.97004 * 120.00223 * 94.99655 * 18 16 15 43 43 H 0.96997 * 119.99679 * 179.97438 * 22 21 19 44 44 H 1.08996 * 109.47853 * 180.02562 * 27 16 15 45 45 H 1.09002 * 109.47153 * 300.00319 * 27 16 15 46 46 H 1.07994 * 120.40685 * 180.27231 * 28 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2119 0.0000 4 6 1.3127 2.3553 0.0005 5 7 1.9178 3.5670 0.0061 6 1 1.3730 4.3695 0.0105 7 6 3.2771 3.6830 0.0008 8 6 3.8992 5.0267 0.0018 9 8 5.1094 5.1359 0.0022 10 7 3.1231 6.1286 0.0023 11 6 3.7386 7.4580 0.0027 12 1 4.6552 7.4339 0.5920 13 6 4.0668 7.8685 -1.4343 14 6 4.7101 9.2567 -1.4338 15 6 3.7385 10.2688 -0.8235 16 6 3.4104 9.8584 0.6134 17 1 4.3271 9.8338 1.2027 18 7 2.4806 10.8279 1.1980 19 6 2.9593 11.9742 1.7740 20 1 4.0223 12.1635 1.7978 21 6 2.0783 12.8926 2.3284 22 7 0.7828 12.6618 2.2999 23 14 2.7312 14.4567 3.1136 24 1 2.8133 15.5282 2.0886 25 1 1.8165 14.8829 4.2031 26 1 4.0831 14.2026 3.6733 27 6 2.7671 8.4702 0.6130 28 6 4.0667 2.5735 0.0004 29 6 3.4597 1.2938 0.0005 30 8 4.1430 0.2799 0.0003 31 1 -0.3633 0.5137 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3634 0.5138 0.8899 34 1 0.2343 2.2973 0.0005 35 1 2.1571 6.0414 0.0017 36 1 4.7593 7.1476 -1.8689 37 1 3.1501 7.8927 -2.0236 38 1 5.6268 9.2320 -0.8446 39 1 4.9444 9.5489 -2.4574 40 1 2.8219 10.2934 -1.4127 41 1 4.1971 11.2577 -0.8228 42 1 1.5258 10.6578 1.1770 43 1 0.1673 13.3033 2.6876 44 1 2.5329 8.1779 1.6366 45 1 1.8504 8.4948 0.0238 46 1 5.1425 2.6682 0.0006 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981228730.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:20:37 Heat of formation + Delta-G solvation = -91.649005 kcal Electronic energy + Delta-G solvation = -28391.358710 eV Core-core repulsion = 24280.930777 eV Total energy + Delta-G solvation = -4110.427933 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.57261 -41.11623 -39.57512 -38.94700 -38.77721 -36.38088 -34.99656 -32.96362 -32.75640 -32.03709 -30.58546 -29.40374 -28.39543 -25.91143 -25.58728 -24.25361 -23.35090 -22.83377 -21.71121 -21.15119 -20.56718 -19.37924 -18.99851 -18.61401 -17.43413 -17.33769 -17.16210 -16.71157 -16.37138 -16.30464 -15.84951 -15.60764 -15.39869 -15.30757 -15.24846 -14.99005 -14.93176 -14.69755 -14.29311 -14.16543 -13.83518 -13.59559 -13.40812 -12.90862 -12.81354 -12.39856 -12.28348 -12.26032 -12.16678 -12.02050 -11.96776 -11.76853 -11.66835 -11.38624 -11.19417 -10.87006 -10.73141 -10.56994 -10.23733 -8.97700 -8.79798 -7.93581 -5.20106 -0.53848 0.12102 1.43474 1.48491 1.49075 1.56841 1.61142 1.68208 2.31002 2.54626 2.57104 3.28188 3.40613 3.52990 3.60720 3.66400 3.81942 3.86263 4.03912 4.24950 4.32345 4.33955 4.40464 4.43484 4.47782 4.53924 4.59383 4.60480 4.67401 4.79516 4.82965 4.94414 5.02656 5.10819 5.16835 5.25024 5.29430 5.36785 5.41122 5.52956 5.56204 5.67913 5.77433 6.21978 6.28051 6.30642 6.82448 6.89816 7.37058 8.13299 8.36228 9.29546 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.019456 B = 0.002121 C = 0.001997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1438.835631 B =13198.678503 C =14015.104028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.005 3.995 2 O -0.325 6.325 3 C -0.062 4.062 4 C 0.075 3.925 5 N -0.532 5.532 6 H 0.443 0.557 7 C 0.147 3.853 8 C 0.563 3.437 9 O -0.539 6.539 10 N -0.696 5.696 11 C 0.158 3.842 12 H 0.077 0.923 13 C -0.119 4.119 14 C -0.108 4.108 15 C -0.128 4.128 16 C 0.175 3.825 17 H 0.035 0.965 18 N -0.734 5.734 19 C -0.234 4.234 20 H 0.071 0.929 21 C -0.073 4.073 22 N -0.966 5.966 23 Si 0.964 3.036 24 H -0.289 1.289 25 H -0.296 1.296 26 H -0.273 1.273 27 C -0.116 4.116 28 C -0.232 4.232 29 C 0.377 3.623 30 O -0.570 6.570 31 H 0.079 0.921 32 H 0.110 0.890 33 H 0.077 0.923 34 H 0.226 0.774 35 H 0.415 0.585 36 H 0.064 0.936 37 H 0.081 0.919 38 H 0.057 0.943 39 H 0.074 0.926 40 H 0.056 0.944 41 H 0.037 0.963 42 H 0.375 0.625 43 H 0.250 0.750 44 H 0.067 0.933 45 H 0.084 0.916 46 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.729 -19.363 -8.476 21.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 O -0.238 6.238 3 C -0.112 4.112 4 C -0.054 4.054 5 N -0.146 5.146 6 H 0.285 0.715 7 C 0.032 3.968 8 C 0.347 3.653 9 O -0.414 6.414 10 N -0.348 5.348 11 C 0.053 3.947 12 H 0.095 0.905 13 C -0.157 4.157 14 C -0.147 4.147 15 C -0.168 4.168 16 C 0.066 3.934 17 H 0.053 0.947 18 N -0.374 5.374 19 C -0.366 4.366 20 H 0.089 0.911 21 C -0.266 4.266 22 N -0.617 5.617 23 Si 0.794 3.206 24 H -0.217 1.217 25 H -0.223 1.223 26 H -0.198 1.198 27 C -0.155 4.155 28 C -0.260 4.260 29 C 0.273 3.727 30 O -0.460 6.460 31 H 0.097 0.903 32 H 0.128 0.872 33 H 0.096 0.904 34 H 0.242 0.758 35 H 0.253 0.747 36 H 0.083 0.917 37 H 0.100 0.900 38 H 0.076 0.924 39 H 0.093 0.907 40 H 0.075 0.925 41 H 0.056 0.944 42 H 0.207 0.793 43 H 0.059 0.941 44 H 0.086 0.914 45 H 0.102 0.898 46 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -4.333 -19.864 -8.380 21.990 hybrid contribution -0.699 1.383 0.601 1.662 sum -5.032 -18.481 -7.779 20.673 Atomic orbital electron populations 1.23512 0.76227 1.06050 1.03081 1.86242 1.23401 1.24684 1.89479 1.20187 0.93669 0.86384 1.10997 1.22278 1.00646 0.82271 1.00233 1.40842 1.03944 1.09867 1.59908 0.71483 1.19998 0.84034 0.94044 0.98688 1.17950 0.86716 0.83399 0.77266 1.90876 1.14760 1.86128 1.49658 1.45820 1.10624 1.05009 1.73334 1.20906 0.96546 0.79761 0.97444 0.90511 1.21844 1.01776 0.96576 0.95514 1.21412 0.98060 0.93979 1.01215 1.22117 0.99010 0.98152 0.97547 1.20320 0.92403 0.88125 0.92502 0.94668 1.42544 1.05424 1.20611 1.68822 1.19548 0.92247 0.96901 1.27932 0.91138 1.25426 0.95699 1.02022 1.03421 1.69776 1.01644 1.37774 1.52543 0.85281 0.77321 0.80368 0.77670 1.21668 1.22316 1.19817 1.21892 0.98818 0.93289 1.01455 1.22274 1.02112 0.90882 1.10685 1.17318 0.88001 0.89476 0.77915 1.90817 1.67261 1.39265 1.48662 0.90299 0.87197 0.90449 0.75756 0.74711 0.91699 0.90003 0.92444 0.90740 0.92496 0.94393 0.79265 0.94114 0.91403 0.89752 0.83166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.03 9.81 113.37 1.11 1.14 16 2 O -0.32 -6.36 10.33 -78.53 -0.81 -7.17 16 3 C -0.06 -1.16 6.71 22.54 0.15 -1.00 16 4 C 0.07 0.49 10.22 83.58 0.85 1.34 16 5 N -0.53 -2.99 5.26 -184.21 -0.97 -3.96 16 6 H 0.44 -1.19 7.00 -92.71 -0.65 -1.84 16 7 C 0.15 2.23 6.77 40.56 0.27 2.50 16 8 C 0.56 10.23 7.77 86.86 0.67 10.90 16 9 O -0.54 -14.73 15.93 -3.76 -0.06 -14.79 16 10 N -0.70 -9.14 5.07 -445.21 -2.26 -11.40 16 11 C 0.16 3.12 2.45 44.99 0.11 3.23 16 12 H 0.08 1.88 7.58 -2.39 -0.02 1.86 16 13 C -0.12 -2.27 5.49 30.60 0.17 -2.10 16 14 C -0.11 -2.48 5.92 30.59 0.18 -2.30 16 15 C -0.13 -3.88 5.50 30.60 0.17 -3.71 16 16 C 0.18 5.93 2.77 44.99 0.12 6.05 16 17 H 0.04 1.29 8.08 -2.39 -0.02 1.27 16 18 N -0.73 -33.35 5.12 -322.94 -1.65 -35.00 16 19 C -0.23 -12.26 9.93 84.03 0.83 -11.43 16 20 H 0.07 3.62 7.83 -2.91 -0.02 3.60 16 21 C -0.07 -4.02 5.50 84.86 0.47 -3.55 16 22 N -0.97 -55.99 13.06 21.65 0.28 -55.71 16 23 Si 0.96 44.57 29.55 68.60 2.03 46.60 16 24 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16 25 H -0.30 -13.85 7.11 99.48 0.71 -13.14 16 26 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 27 C -0.12 -2.74 4.86 30.59 0.15 -2.59 16 28 C -0.23 -5.37 9.53 22.63 0.22 -5.15 16 29 C 0.38 10.41 6.78 23.93 0.16 10.57 16 30 O -0.57 -21.71 17.71 8.95 0.16 -21.55 16 31 H 0.08 0.08 7.66 -2.39 -0.02 0.06 16 32 H 0.11 0.49 8.14 -2.38 -0.02 0.47 16 33 H 0.08 0.11 7.66 -2.39 -0.02 0.09 16 34 H 0.23 -0.86 6.21 -2.91 -0.02 -0.88 16 35 H 0.41 2.00 6.82 -92.71 -0.63 1.36 16 36 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 37 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 38 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 39 H 0.07 1.52 8.14 -2.39 -0.02 1.51 16 40 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 41 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 42 H 0.38 18.02 7.80 -92.71 -0.72 17.29 16 43 H 0.25 14.15 8.31 -92.71 -0.77 13.38 16 44 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 45 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 46 H 0.15 3.95 7.57 -2.91 -0.02 3.93 16 Total: -1.00 -85.12 379.16 1.40 -83.72 By element: Atomic # 1 Polarization: 16.32 SS G_CDS: -0.97 Total: 15.35 kcal Atomic # 6 Polarization: -1.74 SS G_CDS: 5.65 Total: 3.91 kcal Atomic # 7 Polarization: -101.48 SS G_CDS: -4.60 Total: -106.07 kcal Atomic # 8 Polarization: -42.80 SS G_CDS: -0.71 Total: -43.51 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.60 kcal Total: -85.12 1.40 -83.72 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981228730.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.924 kcal (2) G-P(sol) polarization free energy of solvation -85.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.725 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds