Wall clock time and date at job start Tue Mar 31 2020 19:20:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.36005 * 117.00147 * 2 1 4 4 C 1.35851 * 120.31692 * 359.97438 * 3 2 1 5 5 N 1.35441 * 120.77611 * 180.02562 * 4 3 2 6 6 H 0.97010 * 119.29092 * 179.97438 * 5 4 3 7 7 C 1.36424 * 121.41511 * 359.71965 * 5 4 3 8 8 C 1.48069 * 119.72191 * 180.28908 * 7 5 4 9 9 O 1.21520 * 119.99615 * 180.27801 * 8 7 5 10 10 N 1.34777 * 120.00154 * 0.27648 * 8 7 5 11 11 C 1.46505 * 119.99818 * 180.02562 * 10 8 7 12 12 H 1.08997 * 109.47333 * 34.99713 * 11 10 8 13 13 C 1.53005 * 109.46495 * 274.99718 * 11 10 8 14 14 C 1.52996 * 109.46775 * 180.02562 * 13 11 10 15 15 C 1.53000 * 109.47279 * 59.99909 * 14 13 11 16 16 C 1.53005 * 109.47291 * 299.99774 * 15 14 13 17 17 H 1.09005 * 109.47039 * 300.00415 * 16 15 14 18 18 N 1.46496 * 109.47486 * 179.97438 * 16 15 14 19 19 C 1.36936 * 119.99831 * 85.00267 * 18 16 15 20 20 H 1.08004 * 119.99892 * 359.97438 * 19 18 16 21 21 C 1.38810 * 120.00018 * 180.02562 * 19 18 16 22 22 N 1.31614 * 120.00147 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 120.00207 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.46944 * 59.99622 * 23 21 19 25 25 H 1.48495 * 109.47520 * 179.97438 * 23 21 19 26 26 H 1.48500 * 109.47000 * 299.99914 * 23 21 19 27 27 C 1.52996 * 109.46775 * 59.99917 * 16 15 14 28 28 C 1.36177 * 120.55823 * 0.56846 * 7 5 4 29 29 C 1.41576 * 120.31533 * 179.97438 * 3 2 1 30 30 O 1.22270 * 120.65154 * 359.96097 * 29 3 2 31 31 H 1.08998 * 109.46760 * 59.99689 * 1 2 3 32 32 H 1.08993 * 109.47707 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.47243 * 300.00232 * 1 2 3 34 34 H 1.08004 * 119.61091 * 0.04740 * 4 3 2 35 35 H 0.96998 * 119.99672 * 359.97438 * 10 8 7 36 36 H 1.09005 * 109.47039 * 299.99981 * 13 11 10 37 37 H 1.08993 * 109.47287 * 60.00628 * 13 11 10 38 38 H 1.08999 * 109.47154 * 179.97438 * 14 13 11 39 39 H 1.09004 * 109.47430 * 299.99729 * 14 13 11 40 40 H 1.08997 * 109.47260 * 60.00212 * 15 14 13 41 41 H 1.09004 * 109.46955 * 180.02562 * 15 14 13 42 42 H 0.97001 * 120.00086 * 265.00268 * 18 16 15 43 43 H 0.97004 * 120.00435 * 180.02562 * 22 21 19 44 44 H 1.08999 * 109.47154 * 180.02562 * 27 16 15 45 45 H 1.09004 * 109.47430 * 60.00271 * 27 16 15 46 46 H 1.08002 * 120.40907 * 179.72176 * 28 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0465 1.2118 0.0000 4 6 1.3130 2.3552 -0.0005 5 7 1.9182 3.5669 -0.0010 6 1 1.3734 4.3696 -0.0018 7 6 3.2775 3.6828 0.0046 8 6 3.8997 5.0264 0.0103 9 8 5.1100 5.1354 0.0103 10 7 3.1238 6.1284 0.0155 11 6 3.7395 7.4578 0.0206 12 1 4.6556 7.4362 -0.5696 13 6 4.0689 7.8616 1.4591 14 6 4.7113 9.2502 1.4645 15 6 3.7385 10.2646 0.8600 16 6 3.4090 9.8607 -0.5785 17 1 4.3252 9.8395 -1.1688 18 7 2.4771 10.8317 -1.1571 19 6 2.9534 11.9815 -1.7282 20 1 4.0161 12.1728 -1.7516 21 6 2.0703 12.9018 -2.2760 22 7 0.7752 12.6690 -2.2470 23 14 2.7200 14.4708 -3.0544 24 1 3.6243 14.1267 -4.1809 25 1 1.5826 15.2791 -3.5624 26 1 3.4696 15.2534 -2.0391 27 6 2.7666 8.4722 -0.5839 28 6 4.0670 2.5732 -0.0006 29 6 3.4599 1.2936 0.0005 30 8 4.1430 0.2796 0.0017 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 -0.3634 0.5139 0.8899 34 1 0.2345 2.2974 -0.0002 35 1 2.1577 6.0413 0.0151 36 1 3.1527 7.8832 2.0493 37 1 4.7617 7.1388 1.8899 38 1 4.9456 9.5381 2.4894 39 1 5.6274 9.2290 0.8743 40 1 2.8224 10.2858 1.4503 41 1 4.1964 11.2538 0.8635 42 1 1.5226 10.6601 -1.1358 43 1 0.1581 13.3119 -2.6302 44 1 2.5323 8.1842 -1.6088 45 1 1.8505 8.4933 0.0063 46 1 5.1429 2.6678 -0.0006 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981228732.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:20:46 Heat of formation + Delta-G solvation = -64.769221 kcal Electronic energy + Delta-G solvation = -28390.600850 eV Core-core repulsion = 24281.338511 eV Total energy + Delta-G solvation = -4109.262338 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.80575 -40.24169 -38.68285 -38.05499 -37.87166 -35.04476 -33.58165 -31.96842 -31.32013 -31.17729 -29.50836 -28.08890 -27.85295 -25.00060 -23.82259 -23.54552 -22.30675 -21.70380 -20.72895 -20.25685 -19.53643 -18.43616 -18.02413 -17.10953 -16.60977 -16.50004 -16.34093 -15.77056 -15.59390 -14.99644 -14.85271 -14.58879 -14.51174 -14.39473 -14.00501 -13.90212 -13.68640 -13.43105 -13.27832 -13.12818 -12.84842 -12.32732 -12.23396 -11.98747 -11.83994 -11.16736 -11.08806 -10.95189 -10.86958 -10.75639 -10.51600 -10.36514 -10.27721 -9.96652 -9.84282 -9.81526 -9.72023 -9.34138 -8.96169 -8.05670 -7.06397 -5.85679 -3.14755 0.29931 0.79488 2.14027 2.46977 2.47811 2.83756 3.36463 3.38589 3.43620 3.43932 3.93574 4.09295 4.24676 4.48587 4.52006 4.67025 4.67912 4.77932 4.88241 5.02828 5.10638 5.13836 5.34487 5.36391 5.43788 5.50130 5.56310 5.70099 5.76834 5.80100 5.85622 5.96972 6.03064 6.08728 6.15882 6.24830 6.30822 6.39181 6.44870 6.58638 6.78409 6.83991 6.98904 7.00549 7.61347 7.62534 7.69052 8.32897 9.44345 10.00037 10.34539 11.36844 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.019459 B = 0.002121 C = 0.001997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1438.541916 B =13196.698627 C =14015.137889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.288 6.288 3 C -0.032 4.032 4 C 0.028 3.972 5 N -0.564 5.564 6 H 0.420 0.580 7 C 0.124 3.876 8 C 0.557 3.443 9 O -0.500 6.500 10 N -0.716 5.716 11 C 0.148 3.852 12 H 0.095 0.905 13 C -0.125 4.125 14 C -0.115 4.115 15 C -0.138 4.138 16 C 0.184 3.816 17 H 0.050 0.950 18 N -0.724 5.724 19 C -0.240 4.240 20 H 0.071 0.929 21 C -0.013 4.013 22 N -0.934 5.934 23 Si 0.907 3.093 24 H -0.285 1.285 25 H -0.291 1.291 26 H -0.285 1.285 27 C -0.130 4.130 28 C -0.211 4.211 29 C 0.400 3.600 30 O -0.495 6.495 31 H 0.055 0.945 32 H 0.104 0.896 33 H 0.055 0.945 34 H 0.171 0.829 35 H 0.394 0.606 36 H 0.062 0.938 37 H 0.062 0.938 38 H 0.058 0.942 39 H 0.061 0.939 40 H 0.055 0.945 41 H 0.064 0.936 42 H 0.383 0.617 43 H 0.256 0.744 44 H 0.070 0.930 45 H 0.065 0.935 46 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.370 -19.749 7.555 21.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.199 6.199 3 C -0.083 4.083 4 C -0.099 4.099 5 N -0.177 5.177 6 H 0.257 0.743 7 C 0.012 3.988 8 C 0.340 3.660 9 O -0.373 6.373 10 N -0.367 5.367 11 C 0.044 3.956 12 H 0.113 0.887 13 C -0.164 4.164 14 C -0.154 4.154 15 C -0.178 4.178 16 C 0.073 3.927 17 H 0.068 0.932 18 N -0.364 5.364 19 C -0.371 4.371 20 H 0.089 0.911 21 C -0.209 4.209 22 N -0.582 5.582 23 Si 0.738 3.262 24 H -0.212 1.212 25 H -0.217 1.217 26 H -0.212 1.212 27 C -0.169 4.169 28 C -0.238 4.238 29 C 0.289 3.711 30 O -0.378 6.378 31 H 0.074 0.926 32 H 0.122 0.878 33 H 0.073 0.927 34 H 0.188 0.812 35 H 0.228 0.772 36 H 0.081 0.919 37 H 0.081 0.919 38 H 0.077 0.923 39 H 0.080 0.920 40 H 0.074 0.926 41 H 0.083 0.917 42 H 0.216 0.784 43 H 0.066 0.934 44 H 0.089 0.911 45 H 0.084 0.916 46 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -1.945 -20.279 7.447 21.691 hybrid contribution -1.349 1.420 -0.378 1.995 sum -3.294 -18.859 7.069 20.408 Atomic orbital electron populations 1.23153 0.78991 1.04648 1.01004 1.86286 1.20458 1.24241 1.88962 1.20435 0.94813 0.84737 1.08323 1.21651 0.98849 0.84073 1.05313 1.40689 1.05060 1.08537 1.63457 0.74286 1.20429 0.82847 0.95770 0.99744 1.17910 0.87232 0.82913 0.77962 1.90875 1.12819 1.85660 1.47979 1.46159 1.09625 1.06547 1.74327 1.21218 0.97653 0.79135 0.97573 0.88714 1.21898 1.00999 0.97799 0.95661 1.21488 0.99114 0.93998 1.00763 1.22312 0.98346 0.98520 0.98656 1.20090 0.93560 0.86758 0.92278 0.93204 1.42375 1.05023 1.20063 1.68947 1.19191 0.92249 0.95869 1.29764 0.91144 1.24736 0.95332 0.99047 1.01757 1.69638 1.00729 1.36933 1.50940 0.86274 0.77447 0.83290 0.79225 1.21214 1.21703 1.21217 1.22124 0.98182 0.95662 1.00962 1.22503 1.02402 0.90379 1.08499 1.16815 0.86152 0.89819 0.78301 1.90869 1.65719 1.37527 1.43729 0.92630 0.87812 0.92673 0.81202 0.77202 0.91906 0.91913 0.92286 0.91987 0.92631 0.91728 0.78360 0.93444 0.91121 0.91591 0.81257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.08 9.81 101.05 0.99 1.07 16 2 O -0.29 -2.93 10.33 -35.58 -0.37 -3.30 16 3 C -0.03 -0.31 6.71 -39.17 -0.26 -0.58 16 4 C 0.03 0.16 10.22 -16.81 -0.17 -0.01 16 5 N -0.56 -2.92 5.26 -9.58 -0.05 -2.97 16 6 H 0.42 0.81 7.00 -40.82 -0.29 0.53 16 7 C 0.12 1.08 6.77 -82.53 -0.56 0.52 16 8 C 0.56 5.71 7.77 -12.23 -0.09 5.61 16 9 O -0.50 -7.03 15.94 5.35 0.09 -6.94 16 10 N -0.72 -6.06 5.07 -54.68 -0.28 -6.33 16 11 C 0.15 1.67 2.46 -67.93 -0.17 1.50 16 12 H 0.09 1.24 7.58 -51.93 -0.39 0.85 16 13 C -0.13 -1.40 5.49 -26.73 -0.15 -1.55 16 14 C -0.11 -1.45 5.92 -26.73 -0.16 -1.61 16 15 C -0.14 -2.19 5.50 -26.73 -0.15 -2.33 16 16 C 0.18 3.21 2.77 -67.93 -0.19 3.02 16 17 H 0.05 0.92 8.08 -51.93 -0.42 0.50 16 18 N -0.72 -16.63 5.12 -53.43 -0.27 -16.90 16 19 C -0.24 -6.29 9.93 -15.06 -0.15 -6.44 16 20 H 0.07 1.81 7.83 -52.48 -0.41 1.40 16 21 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 22 N -0.93 -26.96 13.06 55.49 0.72 -26.24 16 23 Si 0.91 21.65 29.55 -169.99 -5.02 16.63 16 24 H -0.29 -6.74 7.11 56.52 0.40 -6.33 16 25 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 26 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 27 C -0.13 -1.72 4.86 -26.73 -0.13 -1.85 16 28 C -0.21 -2.35 9.53 -39.03 -0.37 -2.73 16 29 C 0.40 5.22 6.78 -37.02 -0.25 4.96 16 30 O -0.49 -8.50 17.71 -11.16 -0.20 -8.70 16 31 H 0.06 0.16 7.66 -51.93 -0.40 -0.24 16 32 H 0.10 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.05 0.15 7.66 -51.93 -0.40 -0.24 16 34 H 0.17 0.31 6.21 -52.48 -0.33 -0.02 16 35 H 0.39 2.02 6.81 -40.82 -0.28 1.74 16 36 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 39 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 41 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 42 H 0.38 9.31 7.80 -40.82 -0.32 8.99 16 43 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 44 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 45 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 46 H 0.17 1.99 7.58 -52.49 -0.40 1.60 16 LS Contribution 379.16 15.07 5.71 5.71 Total: -1.00 -35.87 379.16 -8.13 -44.00 By element: Atomic # 1 Polarization: 12.46 SS G_CDS: -6.57 Total: 5.90 kcal Atomic # 6 Polarization: 1.05 SS G_CDS: -1.90 Total: -0.85 kcal Atomic # 7 Polarization: -52.57 SS G_CDS: 0.12 Total: -52.45 kcal Atomic # 8 Polarization: -18.46 SS G_CDS: -0.48 Total: -18.94 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -35.87 -8.13 -44.00 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981228732.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.769 kcal (2) G-P(sol) polarization free energy of solvation -35.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds