Wall clock time and date at job start Tue Mar 31 2020 19:20:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.36005 * 117.00147 * 2 1 4 4 C 1.35851 * 120.31692 * 359.97438 * 3 2 1 5 5 N 1.35441 * 120.77611 * 180.02562 * 4 3 2 6 6 H 0.97010 * 119.29092 * 179.97438 * 5 4 3 7 7 C 1.36424 * 121.41511 * 359.71965 * 5 4 3 8 8 C 1.48069 * 119.72191 * 180.28908 * 7 5 4 9 9 O 1.21520 * 119.99615 * 180.27801 * 8 7 5 10 10 N 1.34777 * 120.00154 * 0.27648 * 8 7 5 11 11 C 1.46505 * 119.99818 * 180.02562 * 10 8 7 12 12 H 1.08997 * 109.47333 * 34.99713 * 11 10 8 13 13 C 1.53005 * 109.46495 * 274.99718 * 11 10 8 14 14 C 1.52996 * 109.46775 * 180.02562 * 13 11 10 15 15 C 1.53000 * 109.47279 * 59.99909 * 14 13 11 16 16 C 1.53005 * 109.47291 * 299.99774 * 15 14 13 17 17 H 1.09005 * 109.47039 * 300.00415 * 16 15 14 18 18 N 1.46496 * 109.47486 * 179.97438 * 16 15 14 19 19 C 1.36936 * 119.99831 * 85.00267 * 18 16 15 20 20 H 1.08004 * 119.99892 * 359.97438 * 19 18 16 21 21 C 1.38810 * 120.00018 * 180.02562 * 19 18 16 22 22 N 1.31614 * 120.00147 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 120.00207 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.46944 * 59.99622 * 23 21 19 25 25 H 1.48495 * 109.47520 * 179.97438 * 23 21 19 26 26 H 1.48500 * 109.47000 * 299.99914 * 23 21 19 27 27 C 1.52996 * 109.46775 * 59.99917 * 16 15 14 28 28 C 1.36177 * 120.55823 * 0.56846 * 7 5 4 29 29 C 1.41576 * 120.31533 * 179.97438 * 3 2 1 30 30 O 1.22270 * 120.65154 * 359.96097 * 29 3 2 31 31 H 1.08998 * 109.46760 * 59.99689 * 1 2 3 32 32 H 1.08993 * 109.47707 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.47243 * 300.00232 * 1 2 3 34 34 H 1.08004 * 119.61091 * 0.04740 * 4 3 2 35 35 H 0.96998 * 119.99672 * 359.97438 * 10 8 7 36 36 H 1.09005 * 109.47039 * 299.99981 * 13 11 10 37 37 H 1.08993 * 109.47287 * 60.00628 * 13 11 10 38 38 H 1.08999 * 109.47154 * 179.97438 * 14 13 11 39 39 H 1.09004 * 109.47430 * 299.99729 * 14 13 11 40 40 H 1.08997 * 109.47260 * 60.00212 * 15 14 13 41 41 H 1.09004 * 109.46955 * 180.02562 * 15 14 13 42 42 H 0.97001 * 120.00086 * 265.00268 * 18 16 15 43 43 H 0.97004 * 120.00435 * 180.02562 * 22 21 19 44 44 H 1.08999 * 109.47154 * 180.02562 * 27 16 15 45 45 H 1.09004 * 109.47430 * 60.00271 * 27 16 15 46 46 H 1.08002 * 120.40907 * 179.72176 * 28 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0465 1.2118 0.0000 4 6 1.3130 2.3552 -0.0005 5 7 1.9182 3.5669 -0.0010 6 1 1.3734 4.3696 -0.0018 7 6 3.2775 3.6828 0.0046 8 6 3.8997 5.0264 0.0103 9 8 5.1100 5.1354 0.0103 10 7 3.1238 6.1284 0.0155 11 6 3.7395 7.4578 0.0206 12 1 4.6556 7.4362 -0.5696 13 6 4.0689 7.8616 1.4591 14 6 4.7113 9.2502 1.4645 15 6 3.7385 10.2646 0.8600 16 6 3.4090 9.8607 -0.5785 17 1 4.3252 9.8395 -1.1688 18 7 2.4771 10.8317 -1.1571 19 6 2.9534 11.9815 -1.7282 20 1 4.0161 12.1728 -1.7516 21 6 2.0703 12.9018 -2.2760 22 7 0.7752 12.6690 -2.2470 23 14 2.7200 14.4708 -3.0544 24 1 3.6243 14.1267 -4.1809 25 1 1.5826 15.2791 -3.5624 26 1 3.4696 15.2534 -2.0391 27 6 2.7666 8.4722 -0.5839 28 6 4.0670 2.5732 -0.0006 29 6 3.4599 1.2936 0.0005 30 8 4.1430 0.2796 0.0017 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 -0.3634 0.5139 0.8899 34 1 0.2345 2.2974 -0.0002 35 1 2.1577 6.0413 0.0151 36 1 3.1527 7.8832 2.0493 37 1 4.7617 7.1388 1.8899 38 1 4.9456 9.5381 2.4894 39 1 5.6274 9.2290 0.8743 40 1 2.8224 10.2858 1.4503 41 1 4.1964 11.2538 0.8635 42 1 1.5226 10.6601 -1.1358 43 1 0.1581 13.3119 -2.6302 44 1 2.5323 8.1842 -1.6088 45 1 1.8505 8.4933 0.0063 46 1 5.1429 2.6678 -0.0006 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981228732.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:20:45 Heat of formation + Delta-G solvation = -91.530016 kcal Electronic energy + Delta-G solvation = -28391.761285 eV Core-core repulsion = 24281.338511 eV Total energy + Delta-G solvation = -4110.422773 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.57205 -41.11523 -39.57500 -38.94632 -38.77586 -36.37875 -34.99532 -32.96376 -32.75641 -32.03689 -30.58423 -29.40252 -28.39576 -25.91068 -25.58417 -24.25344 -23.35051 -22.83309 -21.71033 -21.15015 -20.56641 -19.37803 -18.99686 -18.61327 -17.43271 -17.33708 -17.16180 -16.71113 -16.37049 -16.30603 -15.84895 -15.60700 -15.39894 -15.30680 -15.24733 -14.98857 -14.93301 -14.69696 -14.29273 -14.16333 -13.83517 -13.59298 -13.40665 -12.89660 -12.79746 -12.39866 -12.29263 -12.26428 -12.18476 -12.03311 -11.96218 -11.76988 -11.66340 -11.38594 -11.19434 -10.86193 -10.73139 -10.56984 -10.23710 -8.97592 -8.79785 -7.93206 -5.19845 -0.53869 0.12090 1.43494 1.49045 1.49916 1.55845 1.61126 1.68215 2.30955 2.54616 2.57370 3.28182 3.40761 3.52979 3.60797 3.66440 3.81936 3.86288 4.03876 4.25087 4.32342 4.33963 4.40507 4.43477 4.47739 4.53896 4.59380 4.60506 4.67417 4.79498 4.83002 4.94385 5.02637 5.10832 5.16829 5.24989 5.29408 5.36792 5.41110 5.52834 5.56177 5.67912 5.77398 6.21979 6.28057 6.30737 6.82424 6.89804 7.37232 8.13537 8.36506 9.29668 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.019459 B = 0.002121 C = 0.001997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1438.541916 B =13196.698627 C =14015.137889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.005 3.995 2 O -0.325 6.325 3 C -0.062 4.062 4 C 0.075 3.925 5 N -0.532 5.532 6 H 0.443 0.557 7 C 0.147 3.853 8 C 0.563 3.437 9 O -0.539 6.539 10 N -0.696 5.696 11 C 0.158 3.842 12 H 0.077 0.923 13 C -0.119 4.119 14 C -0.108 4.108 15 C -0.128 4.128 16 C 0.175 3.825 17 H 0.035 0.965 18 N -0.734 5.734 19 C -0.236 4.236 20 H 0.070 0.930 21 C -0.073 4.073 22 N -0.966 5.966 23 Si 0.964 3.036 24 H -0.281 1.281 25 H -0.296 1.296 26 H -0.281 1.281 27 C -0.116 4.116 28 C -0.232 4.232 29 C 0.377 3.623 30 O -0.570 6.570 31 H 0.077 0.923 32 H 0.110 0.890 33 H 0.079 0.921 34 H 0.226 0.774 35 H 0.415 0.585 36 H 0.081 0.919 37 H 0.064 0.936 38 H 0.074 0.926 39 H 0.057 0.943 40 H 0.056 0.944 41 H 0.037 0.963 42 H 0.375 0.625 43 H 0.250 0.750 44 H 0.067 0.933 45 H 0.084 0.916 46 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.743 -19.348 8.364 21.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 O -0.238 6.238 3 C -0.112 4.112 4 C -0.054 4.054 5 N -0.146 5.146 6 H 0.285 0.715 7 C 0.032 3.968 8 C 0.347 3.653 9 O -0.414 6.414 10 N -0.348 5.348 11 C 0.053 3.947 12 H 0.095 0.905 13 C -0.157 4.157 14 C -0.147 4.147 15 C -0.168 4.168 16 C 0.067 3.933 17 H 0.053 0.947 18 N -0.374 5.374 19 C -0.368 4.368 20 H 0.088 0.912 21 C -0.265 4.265 22 N -0.617 5.617 23 Si 0.794 3.206 24 H -0.207 1.207 25 H -0.223 1.223 26 H -0.207 1.207 27 C -0.155 4.155 28 C -0.260 4.260 29 C 0.273 3.727 30 O -0.460 6.460 31 H 0.095 0.905 32 H 0.128 0.872 33 H 0.097 0.903 34 H 0.242 0.758 35 H 0.253 0.747 36 H 0.100 0.900 37 H 0.083 0.917 38 H 0.093 0.907 39 H 0.076 0.924 40 H 0.075 0.925 41 H 0.056 0.944 42 H 0.207 0.793 43 H 0.059 0.941 44 H 0.086 0.914 45 H 0.103 0.897 46 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -4.358 -19.842 8.277 21.936 hybrid contribution -0.683 1.375 -0.605 1.651 sum -5.041 -18.466 7.672 20.622 Atomic orbital electron populations 1.23511 0.76223 1.06050 1.03082 1.86240 1.23401 1.24690 1.89477 1.20188 0.93668 0.86383 1.10994 1.22281 1.00644 0.82271 1.00235 1.40844 1.03944 1.09868 1.59908 0.71483 1.19995 0.84033 0.94045 0.98689 1.17952 0.86718 0.83401 0.77264 1.90878 1.14754 1.86130 1.49665 1.45827 1.10623 1.05012 1.73330 1.20911 0.96536 0.79753 0.97453 0.90502 1.21842 1.01775 0.96585 0.95504 1.21414 0.98061 0.93961 1.01230 1.22119 0.98999 0.98133 0.97575 1.20320 0.92384 0.88108 0.92535 0.94662 1.42536 1.05402 1.20266 1.69194 1.19514 0.92244 0.96704 1.28329 0.91156 1.25424 0.95679 1.02009 1.03401 1.69765 1.01580 1.37750 1.52619 0.85353 0.76656 0.80142 0.78486 1.20736 1.22260 1.20707 1.21896 0.98811 0.93273 1.01477 1.22273 1.02115 0.90882 1.10683 1.17319 0.88000 0.89476 0.77916 1.90819 1.67274 1.39250 1.48666 0.90457 0.87194 0.90294 0.75754 0.74709 0.90013 0.91694 0.90749 0.92434 0.92502 0.94417 0.79263 0.94099 0.91404 0.89746 0.83165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.03 9.81 113.37 1.11 1.14 16 2 O -0.32 -6.36 10.33 -78.48 -0.81 -7.17 16 3 C -0.06 -1.15 6.71 22.54 0.15 -1.00 16 4 C 0.07 0.49 10.22 83.58 0.85 1.35 16 5 N -0.53 -3.00 5.26 -184.21 -0.97 -3.97 16 6 H 0.44 -1.18 7.00 -92.70 -0.65 -1.83 16 7 C 0.15 2.23 6.77 40.56 0.27 2.51 16 8 C 0.56 10.23 7.77 86.85 0.67 10.91 16 9 O -0.54 -14.74 15.94 -3.78 -0.06 -14.80 16 10 N -0.70 -9.16 5.07 -445.19 -2.26 -11.42 16 11 C 0.16 3.12 2.46 44.99 0.11 3.23 16 12 H 0.08 1.88 7.58 -2.39 -0.02 1.87 16 13 C -0.12 -2.27 5.49 30.59 0.17 -2.10 16 14 C -0.11 -2.48 5.92 30.59 0.18 -2.30 16 15 C -0.13 -3.89 5.50 30.60 0.17 -3.72 16 16 C 0.18 5.94 2.77 44.99 0.12 6.06 16 17 H 0.04 1.30 8.08 -2.38 -0.02 1.28 16 18 N -0.73 -33.37 5.12 -322.94 -1.65 -35.02 16 19 C -0.24 -12.36 9.93 84.03 0.83 -11.52 16 20 H 0.07 3.61 7.83 -2.91 -0.02 3.58 16 21 C -0.07 -3.98 5.50 84.86 0.47 -3.52 16 22 N -0.97 -55.97 13.06 21.65 0.28 -55.69 16 23 Si 0.96 44.54 29.55 68.60 2.03 46.57 16 24 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 25 H -0.30 -13.84 7.11 99.48 0.71 -13.13 16 26 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 27 C -0.12 -2.75 4.86 30.59 0.15 -2.60 16 28 C -0.23 -5.37 9.53 22.63 0.22 -5.15 16 29 C 0.38 10.41 6.78 23.93 0.16 10.58 16 30 O -0.57 -21.72 17.71 8.93 0.16 -21.56 16 31 H 0.08 0.11 7.66 -2.39 -0.02 0.09 16 32 H 0.11 0.49 8.14 -2.39 -0.02 0.47 16 33 H 0.08 0.08 7.66 -2.39 -0.02 0.06 16 34 H 0.23 -0.86 6.21 -2.91 -0.02 -0.88 16 35 H 0.41 2.01 6.81 -92.71 -0.63 1.37 16 36 H 0.08 1.31 8.14 -2.38 -0.02 1.29 16 37 H 0.06 1.29 8.14 -2.39 -0.02 1.28 16 38 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 39 H 0.06 1.39 8.14 -2.38 -0.02 1.37 16 40 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 41 H 0.04 1.33 8.14 -2.38 -0.02 1.31 16 42 H 0.38 18.02 7.80 -92.71 -0.72 17.30 16 43 H 0.25 14.19 8.31 -92.71 -0.77 13.42 16 44 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 45 H 0.08 1.74 8.14 -2.38 -0.02 1.72 16 46 H 0.15 3.95 7.58 -2.91 -0.02 3.93 16 Total: -1.00 -85.07 379.16 1.40 -83.67 By element: Atomic # 1 Polarization: 16.50 SS G_CDS: -0.97 Total: 15.54 kcal Atomic # 6 Polarization: -1.79 SS G_CDS: 5.65 Total: 3.86 kcal Atomic # 7 Polarization: -101.50 SS G_CDS: -4.60 Total: -106.10 kcal Atomic # 8 Polarization: -42.82 SS G_CDS: -0.71 Total: -43.53 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 2.03 Total: 46.57 kcal Total: -85.07 1.40 -83.67 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981228732.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.861 kcal (2) G-P(sol) polarization free energy of solvation -85.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds