Wall clock time and date at job start Tue Mar 31 2020 19:13:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42890 * 1 3 3 C 1.35522 * 117.00349 * 2 1 4 4 C 1.38823 * 120.89365 * 0.22927 * 3 2 1 5 5 C 1.38709 * 119.20369 * 180.25331 * 4 3 2 6 6 O 1.35517 * 119.47417 * 179.73720 * 5 4 3 7 7 N 1.32596 * 121.05268 * 359.76422 * 5 4 3 8 8 C 1.31612 * 121.97532 * 359.97438 * 7 5 4 9 9 C 1.39548 * 120.67078 * 359.97438 * 8 7 5 10 10 C 1.47339 * 120.55787 * 180.02562 * 9 8 7 11 11 O 1.21612 * 120.00186 * 179.97438 * 10 9 8 12 12 N 1.34779 * 119.99688 * 359.97438 * 10 9 8 13 13 C 1.46502 * 119.99618 * 180.02562 * 12 10 9 14 14 H 1.09005 * 109.47201 * 324.99945 * 13 12 10 15 15 C 1.52996 * 109.47433 * 85.00397 * 13 12 10 16 16 C 1.53001 * 109.47264 * 179.97438 * 15 13 12 17 17 C 1.53001 * 109.46876 * 299.99762 * 16 15 13 18 18 C 1.52999 * 109.46992 * 60.00448 * 17 16 15 19 19 H 1.08999 * 109.47091 * 179.97438 * 18 17 16 20 20 N 1.46499 * 109.47341 * 59.99623 * 18 17 16 21 21 C 1.36939 * 119.99933 * 85.27615 * 20 18 17 22 22 H 1.08001 * 119.99700 * 359.72658 * 21 20 18 23 23 C 1.38810 * 120.00095 * 179.71972 * 21 20 18 24 24 N 1.31624 * 119.99740 * 0.02562 * 23 21 20 25 25 Si 1.86796 * 120.00044 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.47173 * 60.00435 * 25 23 21 27 27 H 1.48497 * 109.47172 * 180.02562 * 25 23 21 28 28 H 1.48506 * 109.47132 * 300.00314 * 25 23 21 29 29 C 1.53001 * 109.46944 * 299.99510 * 18 17 16 30 30 H 1.09006 * 109.47427 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47535 * 299.99844 * 1 2 3 32 32 H 1.09006 * 109.47101 * 60.00156 * 1 2 3 33 33 H 1.08003 * 120.40031 * 0.02562 * 4 3 2 34 34 H 0.96696 * 114.00499 * 270.01943 * 6 5 4 35 35 H 1.08001 * 119.67004 * 180.02562 * 8 7 5 36 36 H 0.96995 * 120.00388 * 0.02562 * 12 10 9 37 37 H 1.09005 * 109.46772 * 59.99649 * 15 13 12 38 38 H 1.08999 * 109.47079 * 299.99758 * 15 13 12 39 39 H 1.08995 * 109.47084 * 180.02562 * 16 15 13 40 40 H 1.08996 * 109.46985 * 59.99762 * 16 15 13 41 41 H 1.08996 * 109.47611 * 300.00258 * 17 16 15 42 42 H 1.09001 * 109.46951 * 179.97438 * 17 16 15 43 43 H 0.97001 * 119.99790 * 264.99588 * 20 18 17 44 44 H 0.96998 * 119.99409 * 179.97438 * 24 23 21 45 45 H 1.09004 * 109.47138 * 180.02562 * 29 18 17 46 46 H 1.09005 * 109.47453 * 300.00041 * 29 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0442 1.2075 0.0000 4 6 1.3065 2.3834 0.0048 5 6 1.9724 3.6002 -0.0007 6 8 1.2576 4.7515 -0.0015 7 7 3.2973 3.6548 -0.0058 8 6 4.0396 2.5680 -0.0053 9 6 3.4500 1.3032 0.0011 10 6 4.2834 0.0882 0.0022 11 8 3.7590 -1.0090 0.0083 12 7 5.6272 0.1928 -0.0036 13 6 6.4559 -1.0153 -0.0030 14 1 5.9696 -1.7892 0.5909 15 6 6.6350 -1.5116 -1.4391 16 6 7.5010 -2.7729 -1.4386 17 6 8.8699 -2.4514 -0.8357 18 6 8.6908 -1.9552 0.6004 19 1 9.6661 -1.7265 1.0301 20 7 8.0377 -2.9956 1.3987 21 6 8.7865 -3.9845 1.9789 22 1 9.8580 -4.0000 1.8442 23 6 8.1684 -4.9670 2.7401 24 7 6.8625 -4.9483 2.9039 25 14 9.1897 -6.3165 3.5309 26 1 10.1764 -5.7102 4.4605 27 1 8.2985 -7.2347 4.2843 28 1 9.9062 -7.0776 2.4760 29 6 7.8248 -0.6938 0.5999 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 0.2269 2.3513 0.0090 34 1 1.0470 5.0832 -0.8851 35 1 5.1160 2.6559 -0.0091 36 1 6.0455 1.0679 -0.0081 37 1 7.1213 -0.7376 -2.0330 38 1 5.6597 -1.7402 -1.8688 39 1 7.6289 -3.1262 -2.4618 40 1 7.0151 -3.5470 -0.8446 41 1 9.3558 -1.6773 -1.4296 42 1 9.4867 -3.3501 -0.8349 43 1 7.0754 -2.9816 1.5197 44 1 6.4306 -5.6351 3.4355 45 1 7.6976 -0.3400 1.6231 46 1 8.3107 0.0803 0.0060 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981343324.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:13:24 Heat of formation + Delta-G solvation = -96.182316 kcal Electronic energy + Delta-G solvation = -29254.562815 eV Core-core repulsion = 25143.938303 eV Total energy + Delta-G solvation = -4110.624512 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.17154 -40.79486 -39.81483 -39.22941 -37.81619 -35.98114 -34.72517 -32.85286 -32.64998 -32.01775 -30.37650 -29.54185 -28.45749 -25.73105 -25.45138 -24.16187 -23.26857 -23.10173 -21.71769 -20.40174 -20.16089 -19.22608 -18.88161 -18.54454 -17.91468 -17.11730 -16.93359 -16.52311 -16.36429 -16.10088 -15.95676 -15.66080 -15.42716 -15.30716 -15.23235 -15.01003 -14.62416 -14.09895 -13.83310 -13.61104 -13.40596 -13.34992 -12.99010 -12.83066 -12.77529 -12.59008 -12.57767 -12.50583 -12.17302 -12.12364 -11.78486 -11.55019 -11.48067 -11.22149 -10.99193 -10.79024 -10.53340 -10.28500 -10.16016 -9.86314 -8.92906 -7.88228 -5.15850 -0.55937 0.07614 1.46600 1.49915 1.55798 1.75764 2.02395 2.10517 2.46050 2.59502 2.67551 3.40717 3.44576 3.55575 3.63998 3.81143 3.95607 4.04969 4.13316 4.15542 4.23170 4.28447 4.32829 4.37703 4.42594 4.49414 4.59535 4.65647 4.69259 4.74654 4.80876 4.85956 5.05565 5.14582 5.17394 5.25462 5.34612 5.47493 5.49280 5.55961 5.67747 5.71282 6.07763 6.33488 6.50412 6.60586 6.74625 7.30464 7.38815 8.19509 8.39462 9.35158 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.016261 B = 0.002726 C = 0.002546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1721.503834 B =10268.567879 C =10995.858250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.008 3.992 2 O -0.305 6.305 3 C 0.223 3.777 4 C -0.282 4.282 5 C 0.372 3.628 6 O -0.483 6.483 7 N -0.545 5.545 8 C 0.210 3.790 9 C -0.254 4.254 10 C 0.559 3.441 11 O -0.566 6.566 12 N -0.705 5.705 13 C 0.155 3.845 14 H 0.042 0.958 15 C -0.109 4.109 16 C -0.106 4.106 17 C -0.126 4.126 18 C 0.167 3.833 19 H 0.055 0.945 20 N -0.735 5.735 21 C -0.231 4.231 22 H 0.079 0.921 23 C -0.083 4.083 24 N -0.974 5.974 25 Si 0.970 3.030 26 H -0.276 1.276 27 H -0.302 1.302 28 H -0.279 1.279 29 C -0.116 4.116 30 H 0.112 0.888 31 H 0.075 0.925 32 H 0.083 0.917 33 H 0.178 0.822 34 H 0.429 0.571 35 H 0.202 0.798 36 H 0.414 0.586 37 H 0.094 0.906 38 H 0.040 0.960 39 H 0.067 0.933 40 H 0.026 0.974 41 H 0.088 0.912 42 H 0.039 0.961 43 H 0.370 0.630 44 H 0.247 0.753 45 H 0.060 0.940 46 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.952 21.981 -12.336 27.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 O -0.213 6.213 3 C 0.167 3.833 4 C -0.303 4.303 5 C 0.195 3.805 6 O -0.295 6.295 7 N -0.267 5.267 8 C 0.052 3.948 9 C -0.261 4.261 10 C 0.346 3.654 11 O -0.445 6.445 12 N -0.357 5.357 13 C 0.050 3.950 14 H 0.060 0.940 15 C -0.147 4.147 16 C -0.144 4.144 17 C -0.166 4.166 18 C 0.058 3.942 19 H 0.073 0.927 20 N -0.376 5.376 21 C -0.363 4.363 22 H 0.096 0.904 23 C -0.274 4.274 24 N -0.625 5.625 25 Si 0.799 3.201 26 H -0.203 1.203 27 H -0.228 1.228 28 H -0.205 1.205 29 C -0.154 4.154 30 H 0.130 0.870 31 H 0.094 0.906 32 H 0.102 0.898 33 H 0.195 0.805 34 H 0.293 0.707 35 H 0.218 0.782 36 H 0.252 0.748 37 H 0.113 0.887 38 H 0.059 0.941 39 H 0.086 0.914 40 H 0.045 0.955 41 H 0.106 0.894 42 H 0.058 0.942 43 H 0.203 0.797 44 H 0.055 0.945 45 H 0.079 0.921 46 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -9.776 21.677 -11.695 26.499 hybrid contribution -0.767 -1.706 0.401 1.913 sum -10.543 19.971 -11.293 25.249 Atomic orbital electron populations 1.23582 0.75639 1.06036 1.03349 1.86393 1.24074 1.25590 1.85272 1.19471 0.91199 0.85558 0.87096 1.22250 1.03412 0.90395 1.14283 1.19150 0.86538 0.85641 0.89124 1.84660 1.70751 1.37788 1.36310 1.67310 1.07125 1.33148 1.19166 1.23020 1.01027 0.83630 0.87169 1.20539 0.91751 0.95744 1.18022 1.18098 0.82760 0.88280 0.76215 1.90865 1.73612 1.29445 1.50614 1.45779 1.04815 1.10307 1.74849 1.20747 0.91072 0.86359 0.96827 0.93951 1.21745 0.99067 0.98164 0.95763 1.21287 0.96310 0.96976 0.99872 1.22056 0.96138 1.00828 0.97534 1.20509 0.95153 0.87632 0.90874 0.92720 1.42762 1.06463 1.28883 1.59490 1.19631 0.91684 1.02817 1.22145 0.90359 1.25548 0.96617 1.02264 1.03016 1.69861 1.09420 1.37056 1.46177 0.85258 0.77379 0.79170 0.78257 1.20256 1.22837 1.20526 1.21979 0.93568 0.98576 1.01314 0.87005 0.90637 0.89823 0.80507 0.70710 0.78186 0.74769 0.88749 0.94089 0.91438 0.95518 0.89397 0.94219 0.79715 0.94475 0.92105 0.86908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.12 9.84 113.37 1.12 1.23 16 2 O -0.30 -8.36 8.71 -67.89 -0.59 -8.95 16 3 C 0.22 5.42 6.74 23.06 0.16 5.57 16 4 C -0.28 -4.82 9.02 22.52 0.20 -4.61 16 5 C 0.37 6.45 7.73 84.69 0.65 7.10 16 6 O -0.48 -6.04 13.54 -88.20 -1.19 -7.23 16 7 N -0.54 -10.62 10.37 -307.95 -3.19 -13.81 16 8 C 0.21 3.88 10.71 85.04 0.91 4.80 16 9 C -0.25 -6.36 5.90 -19.91 -0.12 -6.48 16 10 C 0.56 17.92 7.73 86.64 0.67 18.59 16 11 O -0.57 -24.50 14.94 16.30 0.24 -24.25 16 12 N -0.70 -18.35 5.03 -445.88 -2.24 -20.59 16 13 C 0.15 5.05 2.28 44.99 0.10 5.15 16 14 H 0.04 1.92 5.94 -2.38 -0.01 1.91 16 15 C -0.11 -3.30 5.49 30.59 0.17 -3.13 16 16 C -0.11 -3.68 5.77 30.59 0.18 -3.50 16 17 C -0.13 -4.14 5.61 30.59 0.17 -3.97 16 18 C 0.17 6.20 3.10 44.99 0.14 6.34 16 19 H 0.05 2.00 8.08 -2.39 -0.02 1.98 16 20 N -0.73 -37.23 4.28 -322.94 -1.38 -38.61 16 21 C -0.23 -12.94 9.93 84.03 0.83 -12.10 16 22 H 0.08 4.15 7.83 -2.91 -0.02 4.13 16 23 C -0.08 -4.92 5.50 84.86 0.47 -4.45 16 24 N -0.97 -62.84 13.06 21.65 0.28 -62.56 16 25 Si 0.97 47.72 29.55 68.60 2.03 49.75 16 26 H -0.28 -12.96 7.11 99.48 0.71 -12.26 16 27 H -0.30 -15.18 7.11 99.48 0.71 -14.47 16 28 H -0.28 -13.19 7.11 99.48 0.71 -12.49 16 29 C -0.12 -3.37 5.07 30.60 0.16 -3.21 16 30 H 0.11 1.59 8.14 -2.38 -0.02 1.57 16 31 H 0.08 0.90 7.70 -2.39 -0.02 0.88 16 32 H 0.08 0.83 7.72 -2.38 -0.02 0.81 16 33 H 0.18 1.93 6.45 -2.91 -0.02 1.91 16 34 H 0.43 0.61 9.06 -74.06 -0.67 -0.06 16 35 H 0.20 2.17 6.41 -2.91 -0.02 2.15 16 36 H 0.41 6.83 6.65 -92.71 -0.62 6.21 16 37 H 0.09 2.14 8.14 -2.38 -0.02 2.12 16 38 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 39 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 40 H 0.03 1.18 7.60 -2.39 -0.02 1.17 16 41 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 42 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 43 H 0.37 20.96 6.06 -92.71 -0.56 20.40 16 44 H 0.25 15.60 8.31 -92.71 -0.77 14.83 16 45 H 0.06 1.88 8.14 -2.38 -0.02 1.86 16 46 H 0.11 2.19 8.14 -2.38 -0.02 2.17 16 Total: -1.00 -86.06 374.16 -1.05 -87.11 By element: Atomic # 1 Polarization: 32.63 SS G_CDS: -0.80 Total: 31.83 kcal Atomic # 6 Polarization: 1.51 SS G_CDS: 5.81 Total: 7.32 kcal Atomic # 7 Polarization: -129.04 SS G_CDS: -6.53 Total: -135.57 kcal Atomic # 8 Polarization: -38.89 SS G_CDS: -1.54 Total: -40.44 kcal Atomic # 14 Polarization: 47.72 SS G_CDS: 2.03 Total: 49.75 kcal Total: -86.06 -1.05 -87.11 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981343324.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.073 kcal (2) G-P(sol) polarization free energy of solvation -86.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds