Wall clock time and date at job start Tue Mar 31 2020 19:13:36
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42898 * 1
3 3 C 1.35503 * 116.99825 * 2 1
4 4 C 1.39219 * 120.90115 * 0.22692 * 3 2 1
5 5 C 1.37905 * 119.39055 * 180.25399 * 4 3 2
6 6 N 1.32086 * 121.28764 * 359.78808 * 5 4 3
7 7 C 1.32180 * 121.98120 * 359.97438 * 6 5 4
8 8 O 1.35426 * 119.77586 * 179.97438 * 7 6 5
9 9 C 1.40300 * 120.44559 * 359.97438 * 7 6 5
10 10 C 1.47228 * 120.65077 * 180.02562 * 9 7 6
11 11 O 1.21623 * 119.99607 * 90.00399 * 10 9 7
12 12 N 1.34770 * 120.00218 * 270.00207 * 10 9 7
13 13 C 1.46503 * 120.00160 * 180.02562 * 12 10 9
14 14 H 1.09004 * 109.47048 * 324.99889 * 13 12 10
15 15 C 1.52997 * 109.47302 * 84.99574 * 13 12 10
16 16 C 1.52999 * 109.47114 * 180.02562 * 15 13 12
17 17 C 1.53003 * 109.47087 * 300.00120 * 16 15 13
18 18 C 1.52997 * 109.47241 * 59.99958 * 17 16 15
19 19 H 1.08995 * 109.47096 * 60.00180 * 18 17 16
20 20 N 1.46498 * 109.47036 * 180.02562 * 18 17 16
21 21 C 1.36936 * 119.99972 * 274.99761 * 20 18 17
22 22 H 1.08002 * 119.99631 * 0.02562 * 21 20 18
23 23 C 1.38806 * 120.00202 * 180.02562 * 21 20 18
24 24 N 1.31624 * 120.00103 * 0.02562 * 23 21 20
25 25 Si 1.86803 * 120.00201 * 179.72570 * 23 21 20
26 26 H 1.48494 * 109.47228 * 180.27680 * 25 23 21
27 27 H 1.48500 * 109.47000 * 300.27564 * 25 23 21
28 28 H 1.48493 * 109.46907 * 60.27455 * 25 23 21
29 29 C 1.52994 * 109.47118 * 204.99850 * 13 12 10
30 30 H 1.09003 * 109.47093 * 179.97438 * 1 2 3
31 31 H 1.08998 * 109.47878 * 300.00158 * 1 2 3
32 32 H 1.09000 * 109.47349 * 60.00029 * 1 2 3
33 33 H 1.07999 * 120.30571 * 0.04462 * 4 3 2
34 34 H 1.07994 * 119.35482 * 179.76062 * 5 4 3
35 35 H 0.96698 * 114.00603 * 269.97620 * 8 7 6
36 36 H 0.97005 * 120.00178 * 359.97438 * 12 10 9
37 37 H 1.09004 * 109.46812 * 60.00170 * 15 13 12
38 38 H 1.09003 * 109.47189 * 300.00425 * 15 13 12
39 39 H 1.08997 * 109.46923 * 180.02562 * 16 15 13
40 40 H 1.08995 * 109.47266 * 59.99948 * 16 15 13
41 41 H 1.09009 * 109.46941 * 299.99855 * 17 16 15
42 42 H 1.08997 * 109.47066 * 180.02562 * 17 16 15
43 43 H 0.97001 * 120.00384 * 95.00578 * 20 18 17
44 44 H 0.97005 * 119.99717 * 359.71965 * 24 23 21
45 45 H 1.09002 * 109.47650 * 59.99889 * 29 13 12
46 46 H 1.08994 * 109.47579 * 299.99515 * 29 13 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0441 1.2074 0.0000
4 6 1.3043 2.3867 0.0047
5 6 1.9625 3.5985 -0.0007
6 7 3.2818 3.6626 -0.0062
7 6 4.0354 2.5767 -0.0062
8 8 5.3845 2.6943 -0.0125
9 6 3.4471 1.3030 0.0002
10 6 4.2822 0.0905 0.0008
11 8 4.6312 -0.4069 1.0543
12 7 4.6598 -0.4682 -1.1661
13 6 5.4903 -1.6751 -1.1655
14 1 6.1850 -1.6377 -0.3263
15 6 4.5962 -2.9095 -1.0325
16 6 5.4636 -4.1698 -1.0312
17 6 6.2504 -4.2487 -2.3411
18 6 7.1446 -3.0143 -2.4740
19 1 7.8390 -2.9766 -1.6348
20 7 7.8975 -3.0896 -3.7285
21 6 9.0753 -3.7862 -3.7793
22 1 9.4490 -4.2804 -2.8947
23 6 9.7890 -3.8571 -4.9677
24 7 9.3339 -3.2544 -6.0457
25 14 11.3997 -4.8009 -5.0352
26 1 11.9641 -4.7195 -6.4063
27 1 12.3602 -4.2104 -4.0687
28 1 11.1552 -6.2228 -4.6840
29 6 6.2767 -1.7537 -2.4755
30 1 -0.3633 -1.0277 -0.0005
31 1 -0.3635 0.5138 0.8899
32 1 -0.3634 0.5138 -0.8900
33 1 0.2249 2.3529 0.0092
34 1 1.3880 4.5130 -0.0010
35 1 5.7726 2.7255 -0.8976
36 1 4.3811 -0.0717 -2.0064
37 1 3.9014 -2.9469 -1.8716
38 1 4.0359 -2.8535 -0.0992
39 1 4.8265 -5.0492 -0.9370
40 1 6.1580 -4.1321 -0.1920
41 1 5.5559 -4.2864 -3.1804
42 1 6.8680 -5.1468 -2.3404
43 1 7.5617 -2.6460 -4.5231
44 1 8.4976 -2.7640 -6.0107
45 1 6.9137 -0.8743 -2.5703
46 1 5.5820 -1.7912 -3.3146
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000981462461.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 19:13:36
Heat of formation + Delta-G solvation = -71.466929 kcal
Electronic energy + Delta-G solvation = -29191.451306 eV
Core-core repulsion = 25081.898533 eV
Total energy + Delta-G solvation = -4109.552773 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 335.168 amu
Computer time = 0.75 seconds
Orbital eigenvalues (eV)
-41.46569 -39.70227 -39.21714 -37.89790 -37.15087 -34.83059 -33.55534 -32.29271
-31.13213 -30.99921 -29.26214 -28.04597 -27.54933 -25.02275 -23.55149 -23.27423
-22.16831 -21.67530 -20.50924 -19.76721 -19.48115 -18.09607 -17.92003 -17.56541
-17.17356 -16.56616 -16.16840 -15.69236 -15.32601 -15.16696 -14.82208 -14.51187
-14.25837 -14.02981 -13.85755 -13.60981 -13.53190 -13.44130 -13.15705 -12.66963
-12.27399 -12.23529 -12.12057 -12.04190 -11.98699 -11.04595 -10.91482 -10.82130
-10.67568 -10.55638 -10.29917 -10.21725 -10.07987 -9.94132 -9.71916 -9.49618
-9.39359 -9.17076 -9.00985 -8.87337 -7.03813 -6.09857 -3.09649 0.33288
0.71275 2.40360 2.45334 2.91379 3.12525 3.32580 3.52817 3.56083
3.73295 4.05787 4.31900 4.45300 4.48414 4.59262 4.61083 4.65595
4.89516 4.94368 4.99879 5.04127 5.13025 5.27804 5.37801 5.49273
5.55691 5.66583 5.67190 5.73458 5.81970 5.86562 5.96749 6.08572
6.24069 6.25695 6.42629 6.47302 6.55037 6.56254 6.66033 6.90116
7.04231 7.05064 7.40616 7.43776 7.82466 8.12067 8.75961 9.22801
10.09176 10.23958 11.38597
Molecular weight = 335.17amu
Principal moments of inertia in cm(-1)
A = 0.017841 B = 0.002567 C = 0.002390
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1569.028482 B =10904.713536 C =11714.523160
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.023 3.977
2 O -0.298 6.298
3 C 0.216 3.784
4 C -0.276 4.276
5 C 0.174 3.826
6 N -0.523 5.523
7 C 0.385 3.615
8 O -0.469 6.469
9 C -0.231 4.231
10 C 0.583 3.417
11 O -0.522 6.522
12 N -0.714 5.714
13 C 0.150 3.850
14 H 0.090 0.910
15 C -0.123 4.123
16 C -0.114 4.114
17 C -0.136 4.136
18 C 0.189 3.811
19 H 0.050 0.950
20 N -0.736 5.736
21 C -0.328 4.328
22 H 0.065 0.935
23 C -0.046 4.046
24 N -0.945 5.945
25 Si 1.079 2.921
26 H -0.285 1.285
27 H -0.295 1.295
28 H -0.295 1.295
29 C -0.130 4.130
30 H 0.108 0.892
31 H 0.062 0.938
32 H 0.063 0.937
33 H 0.149 0.851
34 H 0.169 0.831
35 H 0.409 0.591
36 H 0.397 0.603
37 H 0.060 0.940
38 H 0.061 0.939
39 H 0.057 0.943
40 H 0.060 0.940
41 H 0.053 0.947
42 H 0.063 0.937
43 H 0.366 0.634
44 H 0.254 0.746
45 H 0.068 0.932
46 H 0.063 0.937
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -22.103 11.529 10.799 27.167
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.071 4.071
2 O -0.208 6.208
3 C 0.161 3.839
4 C -0.297 4.297
5 C 0.018 3.982
6 N -0.245 5.245
7 C 0.205 3.795
8 O -0.277 6.277
9 C -0.238 4.238
10 C 0.367 3.633
11 O -0.398 6.398
12 N -0.364 5.364
13 C 0.045 3.955
14 H 0.108 0.892
15 C -0.161 4.161
16 C -0.153 4.153
17 C -0.176 4.176
18 C 0.078 3.922
19 H 0.068 0.932
20 N -0.378 5.378
21 C -0.459 4.459
22 H 0.083 0.917
23 C -0.243 4.243
24 N -0.591 5.591
25 Si 0.910 3.090
26 H -0.211 1.211
27 H -0.223 1.223
28 H -0.223 1.223
29 C -0.168 4.168
30 H 0.126 0.874
31 H 0.081 0.919
32 H 0.081 0.919
33 H 0.167 0.833
34 H 0.186 0.814
35 H 0.269 0.731
36 H 0.231 0.769
37 H 0.079 0.921
38 H 0.080 0.920
39 H 0.076 0.924
40 H 0.079 0.921
41 H 0.071 0.929
42 H 0.082 0.918
43 H 0.199 0.801
44 H 0.065 0.935
45 H 0.087 0.913
46 H 0.081 0.919
Dipole moment (debyes) X Y Z Total
from point charges -19.964 11.121 11.341 25.512
hybrid contribution -2.223 0.110 -0.069 2.226
sum -22.187 11.231 11.271 27.303
Atomic orbital electron populations
1.23260 0.76872 1.05049 1.01922 1.86114 1.22536 1.25599 1.86552
1.19079 0.90226 0.85308 0.89259 1.22180 1.01999 0.92585 1.12929
1.22443 0.88637 0.97361 0.89774 1.67326 1.07276 1.32095 1.17852
1.18810 0.84818 0.85431 0.90409 1.84748 1.13642 1.95071 1.34202
1.20320 0.91789 0.95731 1.16002 1.17452 0.79168 0.82378 0.84342
1.90821 1.54826 1.62873 1.31231 1.46118 1.53227 1.29194 1.07827
1.21057 0.91871 0.82867 0.99656 0.89232 1.21868 0.98156 0.94438
1.01678 1.21487 0.98377 0.96385 0.99075 1.22266 0.98603 1.01237
0.95504 1.20042 0.91209 0.90367 0.90533 0.93167 1.42411 1.24697
1.63500 1.07143 1.20042 0.99216 1.28387 0.98251 0.91727 1.25750
1.04591 1.02092 0.91879 1.70894 1.22720 1.36317 1.29163 0.83256
0.74959 0.75179 0.75649 1.21079 1.22251 1.22286 1.22111 0.98709
1.00559 0.95465 0.87363 0.91907 0.91854 0.83303 0.81403 0.73105
0.76885 0.92113 0.92012 0.92426 0.92084 0.92860 0.91839 0.80122
0.93474 0.91348 0.91878
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.02 0.11 9.84 101.05 0.99 1.11 16
2 O -0.30 -2.90 10.03 -18.20 -0.18 -3.08 16
3 C 0.22 2.16 6.74 -38.32 -0.26 1.90 16
4 C -0.28 -1.90 9.09 -39.34 -0.36 -2.26 16
5 C 0.17 1.28 11.15 -17.56 -0.20 1.09 16
6 N -0.52 -5.59 10.37 -13.06 -0.14 -5.73 16
7 C 0.38 4.51 7.77 -16.63 -0.13 4.38 16
8 O -0.47 -5.37 13.01 -17.97 -0.23 -5.61 16
9 C -0.23 -2.80 5.66 -104.57 -0.59 -3.39 16
10 C 0.58 8.41 6.38 -12.61 -0.08 8.33 16
11 O -0.52 -9.73 16.77 5.26 0.09 -9.64 16
12 N -0.71 -8.89 5.07 -54.95 -0.28 -9.17 16
13 C 0.15 2.15 2.45 -67.93 -0.17 1.98 16
14 H 0.09 1.47 7.58 -51.93 -0.39 1.08 16
15 C -0.12 -1.72 5.49 -26.73 -0.15 -1.86 16
16 C -0.11 -1.69 5.92 -26.73 -0.16 -1.85 16
17 C -0.14 -2.42 5.50 -26.73 -0.15 -2.57 16
18 C 0.19 3.70 2.77 -67.91 -0.19 3.51 16
19 H 0.05 1.05 8.08 -51.93 -0.42 0.63 16
20 N -0.74 -18.06 5.12 -53.41 -0.27 -18.33 16
21 C -0.33 -9.15 9.93 -15.06 -0.15 -9.30 16
22 H 0.06 1.79 7.83 -52.49 -0.41 1.38 16
23 C -0.05 -1.33 5.50 -17.43 -0.10 -1.42 16
24 N -0.95 -29.03 13.70 55.49 0.76 -28.27 16
25 Si 1.08 25.96 29.92 -169.99 -5.09 20.88 16
26 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16
27 H -0.30 -6.81 7.11 56.52 0.40 -6.41 16
28 H -0.30 -6.80 7.11 56.52 0.40 -6.40 16
29 C -0.13 -2.03 4.86 -26.71 -0.13 -2.16 16
30 H 0.11 0.39 8.14 -51.93 -0.42 -0.04 16
31 H 0.06 0.22 7.70 -51.93 -0.40 -0.18 16
32 H 0.06 0.19 7.72 -51.93 -0.40 -0.21 16
33 H 0.15 0.53 6.45 -52.49 -0.34 0.19 16
34 H 0.17 0.62 8.06 -52.49 -0.42 0.20 16
35 H 0.41 2.73 9.06 45.56 0.41 3.14 16
36 H 0.40 3.98 8.59 -40.82 -0.35 3.63 16
37 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16
38 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16
39 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16
40 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16
41 H 0.05 0.96 8.14 -51.92 -0.42 0.53 16
42 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16
43 H 0.37 9.20 6.63 -40.82 -0.27 8.93 16
44 H 0.25 7.64 6.77 -40.82 -0.28 7.36 16
45 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16
46 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16
LS Contribution 382.11 15.07 5.76 5.76
Total: -1.00 -37.48 382.11 -7.26 -44.73
By element:
Atomic # 1 Polarization: 16.84 SS G_CDS: -5.87 Total: 10.97 kcal
Atomic # 6 Polarization: -0.71 SS G_CDS: -1.80 Total: -2.51 kcal
Atomic # 7 Polarization: -61.58 SS G_CDS: 0.07 Total: -61.51 kcal
Atomic # 8 Polarization: -18.00 SS G_CDS: -0.33 Total: -18.32 kcal
Atomic # 14 Polarization: 25.96 SS G_CDS: -5.09 Total: 20.88 kcal
Total LS contribution 5.76 Total: 5.76 kcal
Total: -37.48 -7.26 -44.73 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000981462461.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -26.733 kcal
(2) G-P(sol) polarization free energy of solvation -37.477 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.210 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.257 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.734 kcal
(6) G-S(sol) free energy of system = (1) + (5) -71.467 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.75 seconds