Wall clock time and date at job start Tue Mar 31 2020 19:13:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35503 * 116.99825 * 2 1 4 4 C 1.39219 * 120.90115 * 0.22692 * 3 2 1 5 5 C 1.37905 * 119.39055 * 180.25399 * 4 3 2 6 6 N 1.32086 * 121.28764 * 359.78808 * 5 4 3 7 7 C 1.32180 * 121.98120 * 359.97438 * 6 5 4 8 8 O 1.35426 * 119.77586 * 179.97438 * 7 6 5 9 9 C 1.40300 * 120.44559 * 359.97438 * 7 6 5 10 10 C 1.47228 * 120.65077 * 180.02562 * 9 7 6 11 11 O 1.21623 * 119.99607 * 90.00399 * 10 9 7 12 12 N 1.34770 * 120.00218 * 270.00207 * 10 9 7 13 13 C 1.46503 * 120.00160 * 180.02562 * 12 10 9 14 14 H 1.09004 * 109.47048 * 324.99889 * 13 12 10 15 15 C 1.52997 * 109.47302 * 84.99574 * 13 12 10 16 16 C 1.52999 * 109.47114 * 180.02562 * 15 13 12 17 17 C 1.53003 * 109.47087 * 300.00120 * 16 15 13 18 18 C 1.52997 * 109.47241 * 59.99958 * 17 16 15 19 19 H 1.08995 * 109.47096 * 60.00180 * 18 17 16 20 20 N 1.46498 * 109.47036 * 180.02562 * 18 17 16 21 21 C 1.36936 * 119.99972 * 274.99761 * 20 18 17 22 22 H 1.08002 * 119.99631 * 0.02562 * 21 20 18 23 23 C 1.38806 * 120.00202 * 180.02562 * 21 20 18 24 24 N 1.31624 * 120.00103 * 0.02562 * 23 21 20 25 25 Si 1.86803 * 120.00201 * 179.72570 * 23 21 20 26 26 H 1.48494 * 109.47228 * 180.27680 * 25 23 21 27 27 H 1.48500 * 109.47000 * 300.27564 * 25 23 21 28 28 H 1.48493 * 109.46907 * 60.27455 * 25 23 21 29 29 C 1.52994 * 109.47118 * 204.99850 * 13 12 10 30 30 H 1.09003 * 109.47093 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47878 * 300.00158 * 1 2 3 32 32 H 1.09000 * 109.47349 * 60.00029 * 1 2 3 33 33 H 1.07999 * 120.30571 * 0.04462 * 4 3 2 34 34 H 1.07994 * 119.35482 * 179.76062 * 5 4 3 35 35 H 0.96698 * 114.00603 * 269.97620 * 8 7 6 36 36 H 0.97005 * 120.00178 * 359.97438 * 12 10 9 37 37 H 1.09004 * 109.46812 * 60.00170 * 15 13 12 38 38 H 1.09003 * 109.47189 * 300.00425 * 15 13 12 39 39 H 1.08997 * 109.46923 * 180.02562 * 16 15 13 40 40 H 1.08995 * 109.47266 * 59.99948 * 16 15 13 41 41 H 1.09009 * 109.46941 * 299.99855 * 17 16 15 42 42 H 1.08997 * 109.47066 * 180.02562 * 17 16 15 43 43 H 0.97001 * 120.00384 * 95.00578 * 20 18 17 44 44 H 0.97005 * 119.99717 * 359.71965 * 24 23 21 45 45 H 1.09002 * 109.47650 * 59.99889 * 29 13 12 46 46 H 1.08994 * 109.47579 * 299.99515 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0441 1.2074 0.0000 4 6 1.3043 2.3867 0.0047 5 6 1.9625 3.5985 -0.0007 6 7 3.2818 3.6626 -0.0062 7 6 4.0354 2.5767 -0.0062 8 8 5.3845 2.6943 -0.0125 9 6 3.4471 1.3030 0.0002 10 6 4.2822 0.0905 0.0008 11 8 4.6312 -0.4069 1.0543 12 7 4.6598 -0.4682 -1.1661 13 6 5.4903 -1.6751 -1.1655 14 1 6.1850 -1.6377 -0.3263 15 6 4.5962 -2.9095 -1.0325 16 6 5.4636 -4.1698 -1.0312 17 6 6.2504 -4.2487 -2.3411 18 6 7.1446 -3.0143 -2.4740 19 1 7.8390 -2.9766 -1.6348 20 7 7.8975 -3.0896 -3.7285 21 6 9.0753 -3.7862 -3.7793 22 1 9.4490 -4.2804 -2.8947 23 6 9.7890 -3.8571 -4.9677 24 7 9.3339 -3.2544 -6.0457 25 14 11.3997 -4.8009 -5.0352 26 1 11.9641 -4.7195 -6.4063 27 1 12.3602 -4.2104 -4.0687 28 1 11.1552 -6.2228 -4.6840 29 6 6.2767 -1.7537 -2.4755 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3635 0.5138 0.8899 32 1 -0.3634 0.5138 -0.8900 33 1 0.2249 2.3529 0.0092 34 1 1.3880 4.5130 -0.0010 35 1 5.7726 2.7255 -0.8976 36 1 4.3811 -0.0717 -2.0064 37 1 3.9014 -2.9469 -1.8716 38 1 4.0359 -2.8535 -0.0992 39 1 4.8265 -5.0492 -0.9370 40 1 6.1580 -4.1321 -0.1920 41 1 5.5559 -4.2864 -3.1804 42 1 6.8680 -5.1468 -2.3404 43 1 7.5617 -2.6460 -4.5231 44 1 8.4976 -2.7640 -6.0107 45 1 6.9137 -0.8743 -2.5703 46 1 5.5820 -1.7912 -3.3146 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981462461.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:13:36 Heat of formation + Delta-G solvation = -71.466929 kcal Electronic energy + Delta-G solvation = -29191.451306 eV Core-core repulsion = 25081.898533 eV Total energy + Delta-G solvation = -4109.552773 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.46569 -39.70227 -39.21714 -37.89790 -37.15087 -34.83059 -33.55534 -32.29271 -31.13213 -30.99921 -29.26214 -28.04597 -27.54933 -25.02275 -23.55149 -23.27423 -22.16831 -21.67530 -20.50924 -19.76721 -19.48115 -18.09607 -17.92003 -17.56541 -17.17356 -16.56616 -16.16840 -15.69236 -15.32601 -15.16696 -14.82208 -14.51187 -14.25837 -14.02981 -13.85755 -13.60981 -13.53190 -13.44130 -13.15705 -12.66963 -12.27399 -12.23529 -12.12057 -12.04190 -11.98699 -11.04595 -10.91482 -10.82130 -10.67568 -10.55638 -10.29917 -10.21725 -10.07987 -9.94132 -9.71916 -9.49618 -9.39359 -9.17076 -9.00985 -8.87337 -7.03813 -6.09857 -3.09649 0.33288 0.71275 2.40360 2.45334 2.91379 3.12525 3.32580 3.52817 3.56083 3.73295 4.05787 4.31900 4.45300 4.48414 4.59262 4.61083 4.65595 4.89516 4.94368 4.99879 5.04127 5.13025 5.27804 5.37801 5.49273 5.55691 5.66583 5.67190 5.73458 5.81970 5.86562 5.96749 6.08572 6.24069 6.25695 6.42629 6.47302 6.55037 6.56254 6.66033 6.90116 7.04231 7.05064 7.40616 7.43776 7.82466 8.12067 8.75961 9.22801 10.09176 10.23958 11.38597 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.017841 B = 0.002567 C = 0.002390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1569.028482 B =10904.713536 C =11714.523160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.298 6.298 3 C 0.216 3.784 4 C -0.276 4.276 5 C 0.174 3.826 6 N -0.523 5.523 7 C 0.385 3.615 8 O -0.469 6.469 9 C -0.231 4.231 10 C 0.583 3.417 11 O -0.522 6.522 12 N -0.714 5.714 13 C 0.150 3.850 14 H 0.090 0.910 15 C -0.123 4.123 16 C -0.114 4.114 17 C -0.136 4.136 18 C 0.189 3.811 19 H 0.050 0.950 20 N -0.736 5.736 21 C -0.328 4.328 22 H 0.065 0.935 23 C -0.046 4.046 24 N -0.945 5.945 25 Si 1.079 2.921 26 H -0.285 1.285 27 H -0.295 1.295 28 H -0.295 1.295 29 C -0.130 4.130 30 H 0.108 0.892 31 H 0.062 0.938 32 H 0.063 0.937 33 H 0.149 0.851 34 H 0.169 0.831 35 H 0.409 0.591 36 H 0.397 0.603 37 H 0.060 0.940 38 H 0.061 0.939 39 H 0.057 0.943 40 H 0.060 0.940 41 H 0.053 0.947 42 H 0.063 0.937 43 H 0.366 0.634 44 H 0.254 0.746 45 H 0.068 0.932 46 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.103 11.529 10.799 27.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.208 6.208 3 C 0.161 3.839 4 C -0.297 4.297 5 C 0.018 3.982 6 N -0.245 5.245 7 C 0.205 3.795 8 O -0.277 6.277 9 C -0.238 4.238 10 C 0.367 3.633 11 O -0.398 6.398 12 N -0.364 5.364 13 C 0.045 3.955 14 H 0.108 0.892 15 C -0.161 4.161 16 C -0.153 4.153 17 C -0.176 4.176 18 C 0.078 3.922 19 H 0.068 0.932 20 N -0.378 5.378 21 C -0.459 4.459 22 H 0.083 0.917 23 C -0.243 4.243 24 N -0.591 5.591 25 Si 0.910 3.090 26 H -0.211 1.211 27 H -0.223 1.223 28 H -0.223 1.223 29 C -0.168 4.168 30 H 0.126 0.874 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.167 0.833 34 H 0.186 0.814 35 H 0.269 0.731 36 H 0.231 0.769 37 H 0.079 0.921 38 H 0.080 0.920 39 H 0.076 0.924 40 H 0.079 0.921 41 H 0.071 0.929 42 H 0.082 0.918 43 H 0.199 0.801 44 H 0.065 0.935 45 H 0.087 0.913 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -19.964 11.121 11.341 25.512 hybrid contribution -2.223 0.110 -0.069 2.226 sum -22.187 11.231 11.271 27.303 Atomic orbital electron populations 1.23260 0.76872 1.05049 1.01922 1.86114 1.22536 1.25599 1.86552 1.19079 0.90226 0.85308 0.89259 1.22180 1.01999 0.92585 1.12929 1.22443 0.88637 0.97361 0.89774 1.67326 1.07276 1.32095 1.17852 1.18810 0.84818 0.85431 0.90409 1.84748 1.13642 1.95071 1.34202 1.20320 0.91789 0.95731 1.16002 1.17452 0.79168 0.82378 0.84342 1.90821 1.54826 1.62873 1.31231 1.46118 1.53227 1.29194 1.07827 1.21057 0.91871 0.82867 0.99656 0.89232 1.21868 0.98156 0.94438 1.01678 1.21487 0.98377 0.96385 0.99075 1.22266 0.98603 1.01237 0.95504 1.20042 0.91209 0.90367 0.90533 0.93167 1.42411 1.24697 1.63500 1.07143 1.20042 0.99216 1.28387 0.98251 0.91727 1.25750 1.04591 1.02092 0.91879 1.70894 1.22720 1.36317 1.29163 0.83256 0.74959 0.75179 0.75649 1.21079 1.22251 1.22286 1.22111 0.98709 1.00559 0.95465 0.87363 0.91907 0.91854 0.83303 0.81403 0.73105 0.76885 0.92113 0.92012 0.92426 0.92084 0.92860 0.91839 0.80122 0.93474 0.91348 0.91878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.11 9.84 101.05 0.99 1.11 16 2 O -0.30 -2.90 10.03 -18.20 -0.18 -3.08 16 3 C 0.22 2.16 6.74 -38.32 -0.26 1.90 16 4 C -0.28 -1.90 9.09 -39.34 -0.36 -2.26 16 5 C 0.17 1.28 11.15 -17.56 -0.20 1.09 16 6 N -0.52 -5.59 10.37 -13.06 -0.14 -5.73 16 7 C 0.38 4.51 7.77 -16.63 -0.13 4.38 16 8 O -0.47 -5.37 13.01 -17.97 -0.23 -5.61 16 9 C -0.23 -2.80 5.66 -104.57 -0.59 -3.39 16 10 C 0.58 8.41 6.38 -12.61 -0.08 8.33 16 11 O -0.52 -9.73 16.77 5.26 0.09 -9.64 16 12 N -0.71 -8.89 5.07 -54.95 -0.28 -9.17 16 13 C 0.15 2.15 2.45 -67.93 -0.17 1.98 16 14 H 0.09 1.47 7.58 -51.93 -0.39 1.08 16 15 C -0.12 -1.72 5.49 -26.73 -0.15 -1.86 16 16 C -0.11 -1.69 5.92 -26.73 -0.16 -1.85 16 17 C -0.14 -2.42 5.50 -26.73 -0.15 -2.57 16 18 C 0.19 3.70 2.77 -67.91 -0.19 3.51 16 19 H 0.05 1.05 8.08 -51.93 -0.42 0.63 16 20 N -0.74 -18.06 5.12 -53.41 -0.27 -18.33 16 21 C -0.33 -9.15 9.93 -15.06 -0.15 -9.30 16 22 H 0.06 1.79 7.83 -52.49 -0.41 1.38 16 23 C -0.05 -1.33 5.50 -17.43 -0.10 -1.42 16 24 N -0.95 -29.03 13.70 55.49 0.76 -28.27 16 25 Si 1.08 25.96 29.92 -169.99 -5.09 20.88 16 26 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 27 H -0.30 -6.81 7.11 56.52 0.40 -6.41 16 28 H -0.30 -6.80 7.11 56.52 0.40 -6.40 16 29 C -0.13 -2.03 4.86 -26.71 -0.13 -2.16 16 30 H 0.11 0.39 8.14 -51.93 -0.42 -0.04 16 31 H 0.06 0.22 7.70 -51.93 -0.40 -0.18 16 32 H 0.06 0.19 7.72 -51.93 -0.40 -0.21 16 33 H 0.15 0.53 6.45 -52.49 -0.34 0.19 16 34 H 0.17 0.62 8.06 -52.49 -0.42 0.20 16 35 H 0.41 2.73 9.06 45.56 0.41 3.14 16 36 H 0.40 3.98 8.59 -40.82 -0.35 3.63 16 37 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 38 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 41 H 0.05 0.96 8.14 -51.92 -0.42 0.53 16 42 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 43 H 0.37 9.20 6.63 -40.82 -0.27 8.93 16 44 H 0.25 7.64 6.77 -40.82 -0.28 7.36 16 45 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 46 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 LS Contribution 382.11 15.07 5.76 5.76 Total: -1.00 -37.48 382.11 -7.26 -44.73 By element: Atomic # 1 Polarization: 16.84 SS G_CDS: -5.87 Total: 10.97 kcal Atomic # 6 Polarization: -0.71 SS G_CDS: -1.80 Total: -2.51 kcal Atomic # 7 Polarization: -61.58 SS G_CDS: 0.07 Total: -61.51 kcal Atomic # 8 Polarization: -18.00 SS G_CDS: -0.33 Total: -18.32 kcal Atomic # 14 Polarization: 25.96 SS G_CDS: -5.09 Total: 20.88 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -37.48 -7.26 -44.73 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981462461.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.733 kcal (2) G-P(sol) polarization free energy of solvation -37.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds