Wall clock time and date at job start Tue Mar 31 2020 19:13:35
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42898 * 1
3 3 C 1.35503 * 116.99825 * 2 1
4 4 C 1.39219 * 120.90115 * 0.22692 * 3 2 1
5 5 C 1.37905 * 119.39055 * 180.25399 * 4 3 2
6 6 N 1.32086 * 121.28764 * 359.78808 * 5 4 3
7 7 C 1.32180 * 121.98120 * 359.97438 * 6 5 4
8 8 O 1.35426 * 119.77586 * 179.97438 * 7 6 5
9 9 C 1.40300 * 120.44559 * 359.97438 * 7 6 5
10 10 C 1.47228 * 120.65077 * 180.02562 * 9 7 6
11 11 O 1.21623 * 119.99607 * 90.00399 * 10 9 7
12 12 N 1.34770 * 120.00218 * 270.00207 * 10 9 7
13 13 C 1.46503 * 120.00160 * 180.02562 * 12 10 9
14 14 H 1.09004 * 109.47048 * 324.99889 * 13 12 10
15 15 C 1.52997 * 109.47302 * 84.99574 * 13 12 10
16 16 C 1.52999 * 109.47114 * 180.02562 * 15 13 12
17 17 C 1.53003 * 109.47087 * 300.00120 * 16 15 13
18 18 C 1.52997 * 109.47241 * 59.99958 * 17 16 15
19 19 H 1.08995 * 109.47096 * 60.00180 * 18 17 16
20 20 N 1.46498 * 109.47036 * 180.02562 * 18 17 16
21 21 C 1.36936 * 119.99972 * 274.99761 * 20 18 17
22 22 H 1.08002 * 119.99631 * 0.02562 * 21 20 18
23 23 C 1.38806 * 120.00202 * 180.02562 * 21 20 18
24 24 N 1.31624 * 120.00103 * 0.02562 * 23 21 20
25 25 Si 1.86803 * 120.00201 * 179.72570 * 23 21 20
26 26 H 1.48494 * 109.47228 * 180.27680 * 25 23 21
27 27 H 1.48500 * 109.47000 * 300.27564 * 25 23 21
28 28 H 1.48493 * 109.46907 * 60.27455 * 25 23 21
29 29 C 1.52994 * 109.47118 * 204.99850 * 13 12 10
30 30 H 1.09003 * 109.47093 * 179.97438 * 1 2 3
31 31 H 1.08998 * 109.47878 * 300.00158 * 1 2 3
32 32 H 1.09000 * 109.47349 * 60.00029 * 1 2 3
33 33 H 1.07999 * 120.30571 * 0.04462 * 4 3 2
34 34 H 1.07994 * 119.35482 * 179.76062 * 5 4 3
35 35 H 0.96698 * 114.00603 * 269.97620 * 8 7 6
36 36 H 0.97005 * 120.00178 * 359.97438 * 12 10 9
37 37 H 1.09004 * 109.46812 * 60.00170 * 15 13 12
38 38 H 1.09003 * 109.47189 * 300.00425 * 15 13 12
39 39 H 1.08997 * 109.46923 * 180.02562 * 16 15 13
40 40 H 1.08995 * 109.47266 * 59.99948 * 16 15 13
41 41 H 1.09009 * 109.46941 * 299.99855 * 17 16 15
42 42 H 1.08997 * 109.47066 * 180.02562 * 17 16 15
43 43 H 0.97001 * 120.00384 * 95.00578 * 20 18 17
44 44 H 0.97005 * 119.99717 * 359.71965 * 24 23 21
45 45 H 1.09002 * 109.47650 * 59.99889 * 29 13 12
46 46 H 1.08994 * 109.47579 * 299.99515 * 29 13 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0441 1.2074 0.0000
4 6 1.3043 2.3867 0.0047
5 6 1.9625 3.5985 -0.0007
6 7 3.2818 3.6626 -0.0062
7 6 4.0354 2.5767 -0.0062
8 8 5.3845 2.6943 -0.0125
9 6 3.4471 1.3030 0.0002
10 6 4.2822 0.0905 0.0008
11 8 4.6312 -0.4069 1.0543
12 7 4.6598 -0.4682 -1.1661
13 6 5.4903 -1.6751 -1.1655
14 1 6.1850 -1.6377 -0.3263
15 6 4.5962 -2.9095 -1.0325
16 6 5.4636 -4.1698 -1.0312
17 6 6.2504 -4.2487 -2.3411
18 6 7.1446 -3.0143 -2.4740
19 1 7.8390 -2.9766 -1.6348
20 7 7.8975 -3.0896 -3.7285
21 6 9.0753 -3.7862 -3.7793
22 1 9.4490 -4.2804 -2.8947
23 6 9.7890 -3.8571 -4.9677
24 7 9.3339 -3.2544 -6.0457
25 14 11.3997 -4.8009 -5.0352
26 1 11.9641 -4.7195 -6.4063
27 1 12.3602 -4.2104 -4.0687
28 1 11.1552 -6.2228 -4.6840
29 6 6.2767 -1.7537 -2.4755
30 1 -0.3633 -1.0277 -0.0005
31 1 -0.3635 0.5138 0.8899
32 1 -0.3634 0.5138 -0.8900
33 1 0.2249 2.3529 0.0092
34 1 1.3880 4.5130 -0.0010
35 1 5.7726 2.7255 -0.8976
36 1 4.3811 -0.0717 -2.0064
37 1 3.9014 -2.9469 -1.8716
38 1 4.0359 -2.8535 -0.0992
39 1 4.8265 -5.0492 -0.9370
40 1 6.1580 -4.1321 -0.1920
41 1 5.5559 -4.2864 -3.1804
42 1 6.8680 -5.1468 -2.3404
43 1 7.5617 -2.6460 -4.5231
44 1 8.4976 -2.7640 -6.0107
45 1 6.9137 -0.8743 -2.5703
46 1 5.5820 -1.7912 -3.3146
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000981462461.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 19:13:35
Heat of formation + Delta-G solvation = -103.210047 kcal
Electronic energy + Delta-G solvation = -29192.827791 eV
Core-core repulsion = 25081.898533 eV
Total energy + Delta-G solvation = -4110.929258 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 335.168 amu
Computer time = 0.81 seconds
Orbital eigenvalues (eV)
-42.22418 -40.81116 -39.91288 -39.25511 -37.89218 -36.52126 -35.02791 -33.17008
-32.82417 -31.71120 -30.54035 -29.23666 -28.45280 -25.90239 -25.54456 -23.95343
-23.42739 -23.00963 -21.69662 -21.03871 -20.31576 -19.48812 -18.82136 -18.62426
-18.30270 -17.66042 -16.99064 -16.58299 -16.38052 -16.15254 -15.82784 -15.70923
-15.64573 -15.47325 -15.27287 -15.06608 -14.78197 -14.26482 -14.18689 -13.69537
-13.65010 -13.42223 -12.97975 -12.85916 -12.67205 -12.57851 -12.52141 -12.30006
-12.16955 -11.92923 -11.78227 -11.75764 -11.57458 -11.41267 -11.11514 -10.88404
-10.61725 -10.21997 -10.17084 -10.07449 -9.11368 -8.37835 -5.31468 -0.35266
0.03871 1.37183 1.58449 1.67801 1.84188 1.84440 1.95920 2.39574
2.64666 2.71292 3.39691 3.42035 3.49256 3.68992 3.73691 3.77480
3.88429 3.93779 4.11589 4.20661 4.28055 4.28318 4.33622 4.35348
4.41894 4.46813 4.47325 4.57390 4.65978 4.72039 4.81176 4.90418
5.01795 5.07223 5.12093 5.21021 5.26262 5.34181 5.41767 5.53617
5.62469 6.01735 6.34218 6.41939 6.52120 6.76593 7.05429 7.11158
8.01392 8.12145 9.14463
Molecular weight = 335.17amu
Principal moments of inertia in cm(-1)
A = 0.017841 B = 0.002567 C = 0.002390
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1569.028482 B =10904.713536 C =11714.523160
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.012 3.988
2 O -0.324 6.324
3 C 0.210 3.790
4 C -0.259 4.259
5 C 0.176 3.824
6 N -0.545 5.545
7 C 0.374 3.626
8 O -0.489 6.489
9 C -0.258 4.258
10 C 0.587 3.413
11 O -0.573 6.573
12 N -0.699 5.699
13 C 0.159 3.841
14 H 0.067 0.933
15 C -0.114 4.114
16 C -0.106 4.106
17 C -0.125 4.125
18 C 0.182 3.818
19 H 0.033 0.967
20 N -0.747 5.747
21 C -0.327 4.327
22 H 0.062 0.938
23 C -0.103 4.103
24 N -0.976 5.976
25 Si 1.124 2.876
26 H -0.292 1.292
27 H -0.280 1.280
28 H -0.279 1.279
29 C -0.113 4.113
30 H 0.117 0.883
31 H 0.078 0.922
32 H 0.085 0.915
33 H 0.189 0.811
34 H 0.209 0.791
35 H 0.423 0.577
36 H 0.412 0.588
37 H 0.075 0.925
38 H 0.059 0.941
39 H 0.078 0.922
40 H 0.056 0.944
41 H 0.054 0.946
42 H 0.040 0.960
43 H 0.361 0.639
44 H 0.245 0.755
45 H 0.063 0.937
46 H 0.077 0.923
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -24.720 12.251 11.159 29.761
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.081 4.081
2 O -0.235 6.235
3 C 0.155 3.845
4 C -0.279 4.279
5 C 0.022 3.978
6 N -0.268 5.268
7 C 0.195 3.805
8 O -0.300 6.300
9 C -0.266 4.266
10 C 0.373 3.627
11 O -0.452 6.452
12 N -0.349 5.349
13 C 0.054 3.946
14 H 0.085 0.915
15 C -0.152 4.152
16 C -0.144 4.144
17 C -0.165 4.165
18 C 0.074 3.926
19 H 0.051 0.949
20 N -0.389 5.389
21 C -0.459 4.459
22 H 0.080 0.920
23 C -0.295 4.295
24 N -0.624 5.624
25 Si 0.949 3.051
26 H -0.218 1.218
27 H -0.206 1.206
28 H -0.205 1.205
29 C -0.152 4.152
30 H 0.135 0.865
31 H 0.096 0.904
32 H 0.103 0.897
33 H 0.207 0.793
34 H 0.226 0.774
35 H 0.285 0.715
36 H 0.248 0.752
37 H 0.094 0.906
38 H 0.077 0.923
39 H 0.097 0.903
40 H 0.075 0.925
41 H 0.073 0.927
42 H 0.059 0.941
43 H 0.193 0.807
44 H 0.056 0.944
45 H 0.082 0.918
46 H 0.095 0.905
Dipole moment (debyes) X Y Z Total
from point charges -22.635 11.857 11.707 28.107
hybrid contribution -1.540 -0.073 -0.132 1.548
sum -24.175 11.784 11.575 29.280
Atomic orbital electron populations
1.23610 0.74429 1.06376 1.03724 1.86084 1.25140 1.25849 1.86400
1.19259 0.89619 0.86551 0.89056 1.22563 1.03719 0.90998 1.10654
1.23209 0.87724 0.99229 0.87678 1.67396 1.08904 1.31608 1.18874
1.18890 0.84815 0.85709 0.91106 1.84695 1.14311 1.95153 1.35819
1.20207 0.92812 0.94525 1.19050 1.17818 0.78544 0.82670 0.83674
1.90783 1.56895 1.64585 1.32928 1.45922 1.52300 1.28398 1.08323
1.20791 0.91855 0.84149 0.97812 0.91473 1.21782 0.97880 0.93424
1.02130 1.21413 0.98327 0.97808 0.96901 1.22071 0.98125 0.98934
0.97370 1.20239 0.91437 0.93102 0.87861 0.94885 1.42569 1.24508
1.63221 1.08566 1.20331 1.00046 1.27542 0.97961 0.91996 1.27093
1.07583 1.03037 0.91742 1.70994 1.23035 1.38158 1.30204 0.82665
0.71887 0.75009 0.75509 1.21813 1.20639 1.20501 1.21881 0.98357
0.98261 0.96716 0.86503 0.90359 0.89663 0.79350 0.77401 0.71450
0.75216 0.90617 0.92264 0.90299 0.92494 0.92696 0.94114 0.80685
0.94438 0.91811 0.90458
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.01 0.08 9.84 113.37 1.12 1.19 16
2 O -0.32 -5.70 10.03 -88.05 -0.88 -6.58 16
3 C 0.21 3.82 6.74 23.09 0.16 3.97 16
4 C -0.26 -2.67 9.09 22.43 0.20 -2.47 16
5 C 0.18 2.04 11.15 84.58 0.94 2.99 16
6 N -0.54 -10.86 10.37 -308.27 -3.20 -14.06 16
7 C 0.37 8.70 7.77 85.14 0.66 9.36 16
8 O -0.49 -11.56 13.01 -87.21 -1.14 -12.70 16
9 C -0.26 -6.18 5.66 -19.83 -0.11 -6.29 16
10 C 0.59 17.17 6.38 86.61 0.55 17.72 16
11 O -0.57 -22.04 16.77 -4.10 -0.07 -22.11 16
12 N -0.70 -17.25 5.07 -446.01 -2.26 -19.51 16
13 C 0.16 4.55 2.45 44.99 0.11 4.66 16
14 H 0.07 2.27 7.58 -2.39 -0.02 2.25 16
15 C -0.11 -3.04 5.49 30.59 0.17 -2.87 16
16 C -0.11 -3.01 5.92 30.59 0.18 -2.83 16
17 C -0.12 -4.42 5.50 30.59 0.17 -4.26 16
18 C 0.18 7.23 2.77 45.01 0.12 7.35 16
19 H 0.03 1.42 8.08 -2.39 -0.02 1.40 16
20 N -0.75 -37.31 5.12 -322.88 -1.65 -38.96 16
21 C -0.33 -18.50 9.93 84.03 0.83 -17.66 16
22 H 0.06 3.47 7.83 -2.91 -0.02 3.44 16
23 C -0.10 -6.02 5.50 84.86 0.47 -5.55 16
24 N -0.98 -60.84 13.70 21.65 0.30 -60.54 16
25 Si 1.12 52.49 29.92 68.60 2.05 54.54 16
26 H -0.29 -13.88 7.11 99.48 0.71 -13.17 16
27 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16
28 H -0.28 -12.14 7.11 99.48 0.71 -11.44 16
29 C -0.11 -3.54 4.86 30.61 0.15 -3.39 16
30 H 0.12 0.53 8.14 -2.39 -0.02 0.51 16
31 H 0.08 0.26 7.70 -2.39 -0.02 0.24 16
32 H 0.08 0.17 7.72 -2.39 -0.02 0.15 16
33 H 0.19 0.34 6.45 -2.91 -0.02 0.32 16
34 H 0.21 0.57 8.06 -2.91 -0.02 0.55 16
35 H 0.42 5.98 9.06 -74.06 -0.67 5.31 16
36 H 0.41 7.89 8.59 -92.70 -0.80 7.10 16
37 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16
38 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16
39 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16
40 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16
41 H 0.05 1.92 8.14 -2.38 -0.02 1.90 16
42 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16
43 H 0.36 18.54 6.63 -92.71 -0.61 17.92 16
44 H 0.25 15.10 6.77 -92.70 -0.63 14.47 16
45 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16
46 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16
Total: -1.00 -83.68 382.11 -2.03 -85.71
By element:
Atomic # 1 Polarization: 33.19 SS G_CDS: -0.90 Total: 32.29 kcal
Atomic # 6 Polarization: -3.80 SS G_CDS: 5.72 Total: 1.92 kcal
Atomic # 7 Polarization: -126.26 SS G_CDS: -6.81 Total: -133.07 kcal
Atomic # 8 Polarization: -39.30 SS G_CDS: -2.09 Total: -41.38 kcal
Atomic # 14 Polarization: 52.49 SS G_CDS: 2.05 Total: 54.54 kcal
Total: -83.68 -2.03 -85.71 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000981462461.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -17.501 kcal
(2) G-P(sol) polarization free energy of solvation -83.678 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.180 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.030 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.709 kcal
(6) G-S(sol) free energy of system = (1) + (5) -103.210 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.82 seconds