Wall clock time and date at job start Tue Mar 31 2020 19:13:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35506 * 116.99582 * 2 1 4 4 C 1.39207 * 120.90320 * 359.97438 * 3 2 1 5 5 C 1.37901 * 119.39428 * 180.02562 * 4 3 2 6 6 N 1.32080 * 121.28709 * 359.97438 * 5 4 3 7 7 C 1.32178 * 121.98069 * 359.70463 * 6 5 4 8 8 O 1.35434 * 119.77856 * 180.29278 * 7 6 5 9 9 C 1.40291 * 120.44479 * 0.58040 * 7 6 5 10 10 C 1.47226 * 120.65426 * 179.70444 * 9 7 6 11 11 O 1.21627 * 120.00203 * 269.72715 * 10 9 7 12 12 N 1.34780 * 119.99979 * 89.73096 * 10 9 7 13 13 C 1.46496 * 120.00083 * 180.02562 * 12 10 9 14 14 H 1.09004 * 109.47374 * 324.99398 * 13 12 10 15 15 C 1.53000 * 109.47631 * 84.99376 * 13 12 10 16 16 C 1.52997 * 109.47060 * 59.99933 * 15 13 12 17 17 C 1.52999 * 109.47317 * 59.99960 * 16 15 13 18 18 C 1.53005 * 109.47159 * 300.00546 * 17 16 15 19 19 H 1.09002 * 109.46935 * 299.99411 * 18 17 16 20 20 N 1.46500 * 109.47094 * 179.97438 * 18 17 16 21 21 C 1.36943 * 120.00134 * 84.99505 * 20 18 17 22 22 H 1.08007 * 119.99758 * 0.02562 * 21 20 18 23 23 C 1.38802 * 120.00199 * 179.97438 * 21 20 18 24 24 N 1.31619 * 120.00039 * 0.02562 * 23 21 20 25 25 Si 1.86801 * 120.00111 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.47098 * 0.02562 * 25 23 21 27 27 H 1.48505 * 109.46789 * 120.00385 * 25 23 21 28 28 H 1.48497 * 109.47414 * 240.00144 * 25 23 21 29 29 C 1.52997 * 109.47452 * 59.99536 * 18 17 16 30 30 H 1.09004 * 109.47097 * 299.99756 * 1 2 3 31 31 H 1.08998 * 109.47128 * 60.00399 * 1 2 3 32 32 H 1.09002 * 109.46494 * 180.02562 * 1 2 3 33 33 H 1.07997 * 120.30376 * 0.02562 * 4 3 2 34 34 H 1.08003 * 119.36005 * 179.97438 * 5 4 3 35 35 H 0.96697 * 113.99496 * 270.28754 * 8 7 6 36 36 H 0.97000 * 119.99750 * 359.97438 * 12 10 9 37 37 H 1.09002 * 109.47398 * 180.02562 * 15 13 12 38 38 H 1.09001 * 109.47194 * 300.00282 * 15 13 12 39 39 H 1.08996 * 109.47853 * 180.02562 * 16 15 13 40 40 H 1.09002 * 109.47153 * 300.00319 * 16 15 13 41 41 H 1.09000 * 109.47486 * 180.02562 * 17 16 15 42 42 H 1.09002 * 109.46716 * 60.00091 * 17 16 15 43 43 H 0.97004 * 120.00223 * 264.99822 * 20 18 17 44 44 H 0.97006 * 119.99987 * 180.02562 * 24 23 21 45 45 H 1.08993 * 109.47194 * 179.97438 * 29 18 17 46 46 H 1.09002 * 109.46695 * 59.99734 * 29 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0441 1.2074 0.0000 4 6 1.3043 2.3867 -0.0005 5 6 1.9624 3.5985 -0.0011 6 7 3.2817 3.6626 -0.0006 7 6 4.0353 2.5768 0.0062 8 8 5.3845 2.6945 0.0125 9 6 3.4471 1.3031 0.0010 10 6 4.2822 0.0906 0.0020 11 8 4.6276 -0.4109 -1.0509 12 7 4.6639 -0.4638 1.1697 13 6 5.4953 -1.6700 1.1707 14 1 5.2167 -2.3041 0.3290 15 6 6.9680 -1.2745 1.0456 16 6 7.3592 -0.3845 2.2270 17 6 7.1460 -1.1497 3.5346 18 6 5.6732 -1.5453 3.6597 19 1 5.0547 -0.6478 3.6589 20 7 5.4691 -2.2785 4.9115 21 6 5.2487 -1.5948 6.0774 22 1 5.2249 -0.5150 6.0739 23 6 5.0548 -2.2894 7.2633 24 7 5.0833 -3.6053 7.2674 25 14 4.7549 -1.3568 8.8538 26 1 4.7708 0.1031 8.5821 27 1 3.4335 -1.7417 9.4116 28 1 5.8212 -1.6904 9.8319 29 6 5.2820 -2.4353 2.4783 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3632 -1.0277 0.0005 33 1 0.2249 2.3528 -0.0005 34 1 1.3880 4.5131 -0.0019 35 1 5.7802 2.7305 -0.8691 36 1 4.3888 -0.0636 2.0094 37 1 7.5866 -2.1720 1.0459 38 1 7.1200 -0.7293 0.1141 39 1 8.4083 -0.1024 2.1377 40 1 6.7407 0.5130 2.2262 41 1 7.4242 -0.5155 4.3763 42 1 7.7645 -2.0472 3.5354 43 1 5.4902 -3.2483 4.9145 44 1 4.9474 -4.0908 8.0962 45 1 4.2330 -2.7174 2.5677 46 1 5.9007 -3.3327 2.4791 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981462462.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:13:40 Heat of formation + Delta-G solvation = -69.664485 kcal Electronic energy + Delta-G solvation = -29877.038537 eV Core-core repulsion = 25767.563924 eV Total energy + Delta-G solvation = -4109.474613 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.34144 -39.73208 -39.09173 -37.76210 -37.02180 -34.43102 -33.08440 -32.09039 -31.12804 -30.87265 -29.39964 -27.92153 -27.79640 -24.92538 -23.70185 -23.14729 -22.09739 -21.37694 -20.88079 -19.51298 -18.78979 -18.11236 -17.82754 -17.39773 -17.02475 -16.37115 -15.72864 -15.58435 -15.28573 -15.07524 -14.81246 -14.52697 -14.32326 -14.03898 -13.57353 -13.44783 -13.37782 -13.03948 -12.94357 -12.38580 -12.12132 -12.02797 -11.97754 -11.87330 -11.83250 -11.68392 -10.98931 -10.89421 -10.71928 -10.39197 -10.30722 -10.14263 -10.12880 -9.71987 -9.64164 -9.49729 -9.37615 -9.27239 -8.92358 -8.80675 -6.96016 -5.77440 -3.06026 0.45928 0.85094 2.54520 2.57028 3.09714 3.22042 3.42014 3.48181 3.50040 3.54835 4.19559 4.46129 4.56593 4.59353 4.61520 4.74162 4.76206 5.02682 5.09872 5.15063 5.17892 5.23707 5.26091 5.50996 5.52423 5.63557 5.73564 5.80982 5.85838 5.93637 6.01939 6.11117 6.14976 6.30257 6.35685 6.56451 6.60760 6.69530 6.70412 6.76630 6.98826 7.12355 7.14551 7.53513 7.61585 7.69906 8.25157 8.41181 9.52518 10.10237 10.44963 11.45275 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.011069 B = 0.003485 C = 0.003182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2529.001961 B = 8032.184041 C = 8797.926054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.298 6.298 3 C 0.217 3.783 4 C -0.275 4.275 5 C 0.173 3.827 6 N -0.524 5.524 7 C 0.384 3.616 8 O -0.469 6.469 9 C -0.230 4.230 10 C 0.585 3.415 11 O -0.540 6.540 12 N -0.700 5.700 13 C 0.151 3.849 14 H 0.084 0.916 15 C -0.126 4.126 16 C -0.116 4.116 17 C -0.136 4.136 18 C 0.180 3.820 19 H 0.040 0.960 20 N -0.725 5.725 21 C -0.237 4.237 22 H 0.070 0.930 23 C -0.013 4.013 24 N -0.932 5.932 25 Si 0.904 3.096 26 H -0.281 1.281 27 H -0.292 1.292 28 H -0.292 1.292 29 C -0.133 4.133 30 H 0.064 0.936 31 H 0.061 0.939 32 H 0.108 0.892 33 H 0.149 0.851 34 H 0.168 0.832 35 H 0.408 0.592 36 H 0.404 0.596 37 H 0.070 0.930 38 H 0.061 0.939 39 H 0.053 0.947 40 H 0.058 0.942 41 H 0.060 0.940 42 H 0.055 0.945 43 H 0.384 0.616 44 H 0.254 0.746 45 H 0.069 0.931 46 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.513 11.045 -18.789 23.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.207 6.207 3 C 0.162 3.838 4 C -0.296 4.296 5 C 0.017 3.983 6 N -0.246 5.246 7 C 0.205 3.795 8 O -0.277 6.277 9 C -0.238 4.238 10 C 0.369 3.631 11 O -0.417 6.417 12 N -0.351 5.351 13 C 0.047 3.953 14 H 0.102 0.898 15 C -0.164 4.164 16 C -0.154 4.154 17 C -0.176 4.176 18 C 0.070 3.930 19 H 0.058 0.942 20 N -0.365 5.365 21 C -0.368 4.368 22 H 0.088 0.912 23 C -0.209 4.209 24 N -0.581 5.581 25 Si 0.735 3.265 26 H -0.206 1.206 27 H -0.219 1.219 28 H -0.219 1.219 29 C -0.172 4.172 30 H 0.083 0.917 31 H 0.080 0.920 32 H 0.127 0.873 33 H 0.167 0.833 34 H 0.185 0.815 35 H 0.268 0.732 36 H 0.240 0.760 37 H 0.088 0.912 38 H 0.079 0.921 39 H 0.071 0.929 40 H 0.077 0.923 41 H 0.079 0.921 42 H 0.074 0.926 43 H 0.217 0.783 44 H 0.064 0.936 45 H 0.087 0.913 46 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -6.834 11.302 -18.778 22.957 hybrid contribution -0.842 -0.280 0.986 1.326 sum -7.675 11.021 -17.792 22.292 Atomic orbital electron populations 1.23265 0.76844 1.05096 1.01886 1.86116 1.22577 1.25564 1.86467 1.19094 0.90299 0.85331 0.89071 1.22177 1.02021 0.92603 1.12835 1.22416 0.88654 0.97325 0.89890 1.67307 1.07282 1.32136 1.17910 1.18790 0.84816 0.85416 0.90515 1.84708 1.13605 1.95085 1.34324 1.20364 0.91848 0.95740 1.15831 1.17431 0.78891 0.82423 0.84342 1.90783 1.56705 1.62904 1.31349 1.46147 1.51835 1.28877 1.08196 1.21005 0.90033 0.85384 0.98911 0.89752 1.21882 0.95414 1.00423 0.98686 1.21503 1.00324 0.98550 0.95009 1.22273 0.99941 0.99728 0.95706 1.20149 0.93097 0.93745 0.85971 0.94172 1.42430 1.85809 1.05805 1.02460 1.19278 1.40561 0.91012 0.85957 0.91210 1.24720 1.02936 0.95482 0.97769 1.69671 1.56980 1.05086 1.26370 0.86160 0.77407 0.78820 0.84086 1.20578 1.21931 1.21867 1.22123 1.02444 0.99208 0.93390 0.91741 0.92007 0.87334 0.83321 0.81478 0.73185 0.75989 0.91178 0.92058 0.92857 0.92289 0.92117 0.92588 0.78261 0.93598 0.91253 0.90446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 9.84 101.05 0.99 1.15 16 2 O -0.30 -3.41 10.03 -18.21 -0.18 -3.60 16 3 C 0.22 2.50 6.74 -38.32 -0.26 2.24 16 4 C -0.28 -2.31 9.09 -39.34 -0.36 -2.67 16 5 C 0.17 1.50 11.15 -17.57 -0.20 1.30 16 6 N -0.52 -6.12 10.37 -13.06 -0.14 -6.25 16 7 C 0.38 4.82 7.77 -16.63 -0.13 4.69 16 8 O -0.47 -5.47 13.02 -17.99 -0.23 -5.71 16 9 C -0.23 -3.06 5.66 -104.57 -0.59 -3.65 16 10 C 0.59 8.86 6.38 -12.61 -0.08 8.78 16 11 O -0.54 -9.54 16.77 5.25 0.09 -9.45 16 12 N -0.70 -10.24 4.23 -54.94 -0.23 -10.48 16 13 C 0.15 2.22 2.78 -67.93 -0.19 2.04 16 14 H 0.08 1.28 7.58 -51.93 -0.39 0.88 16 15 C -0.13 -1.76 5.60 -26.73 -0.15 -1.91 16 16 C -0.12 -1.71 5.77 -26.73 -0.15 -1.87 16 17 C -0.14 -2.43 5.50 -26.73 -0.15 -2.58 16 18 C 0.18 3.47 2.60 -67.93 -0.18 3.29 16 19 H 0.04 0.79 6.44 -51.93 -0.33 0.46 16 20 N -0.72 -17.78 5.12 -53.42 -0.27 -18.05 16 21 C -0.24 -6.49 9.93 -15.06 -0.15 -6.64 16 22 H 0.07 1.87 7.83 -52.48 -0.41 1.46 16 23 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 24 N -0.93 -27.95 13.06 55.49 0.72 -27.23 16 25 Si 0.90 22.30 29.55 -169.99 -5.02 17.28 16 26 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 27 H -0.29 -7.24 7.11 56.52 0.40 -6.83 16 28 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 29 C -0.13 -2.17 5.08 -26.73 -0.14 -2.30 16 30 H 0.06 0.34 7.71 -51.93 -0.40 -0.06 16 31 H 0.06 0.29 7.71 -51.93 -0.40 -0.11 16 32 H 0.11 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.15 0.76 6.45 -52.49 -0.34 0.42 16 34 H 0.17 0.83 8.06 -52.48 -0.42 0.40 16 35 H 0.41 3.00 9.06 45.56 0.41 3.41 16 36 H 0.40 5.97 6.85 -40.82 -0.28 5.69 16 37 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 39 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 40 H 0.06 0.90 7.60 -51.93 -0.39 0.50 16 41 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 42 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 43 H 0.38 10.04 7.80 -40.82 -0.32 9.72 16 44 H 0.25 7.38 8.31 -40.82 -0.34 7.04 16 45 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 46 H 0.08 1.24 8.14 -51.93 -0.42 0.81 16 LS Contribution 379.38 15.07 5.72 5.72 Total: -1.00 -35.02 379.38 -7.17 -42.18 By element: Atomic # 1 Polarization: 19.96 SS G_CDS: -5.80 Total: 14.16 kcal Atomic # 6 Polarization: 3.23 SS G_CDS: -1.82 Total: 1.41 kcal Atomic # 7 Polarization: -62.09 SS G_CDS: 0.08 Total: -62.00 kcal Atomic # 8 Polarization: -18.42 SS G_CDS: -0.33 Total: -18.75 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.28 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -35.02 -7.17 -42.18 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981462462.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.480 kcal (2) G-P(sol) polarization free energy of solvation -35.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds