Wall clock time and date at job start Tue Mar 31 2020 19:13:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35506 * 116.99582 * 2 1 4 4 C 1.39207 * 120.90320 * 359.97438 * 3 2 1 5 5 C 1.37901 * 119.39428 * 180.02562 * 4 3 2 6 6 N 1.32080 * 121.28709 * 359.97438 * 5 4 3 7 7 C 1.32178 * 121.98069 * 359.70463 * 6 5 4 8 8 O 1.35434 * 119.77856 * 180.29278 * 7 6 5 9 9 C 1.40291 * 120.44479 * 0.58040 * 7 6 5 10 10 C 1.47226 * 120.65426 * 179.70444 * 9 7 6 11 11 O 1.21627 * 120.00203 * 269.72715 * 10 9 7 12 12 N 1.34780 * 119.99979 * 89.73096 * 10 9 7 13 13 C 1.46496 * 120.00083 * 180.02562 * 12 10 9 14 14 H 1.09004 * 109.47374 * 324.99398 * 13 12 10 15 15 C 1.53000 * 109.47631 * 84.99376 * 13 12 10 16 16 C 1.52997 * 109.47060 * 59.99933 * 15 13 12 17 17 C 1.52999 * 109.47317 * 59.99960 * 16 15 13 18 18 C 1.53005 * 109.47159 * 300.00546 * 17 16 15 19 19 H 1.09002 * 109.46935 * 299.99411 * 18 17 16 20 20 N 1.46500 * 109.47094 * 179.97438 * 18 17 16 21 21 C 1.36943 * 120.00134 * 84.99505 * 20 18 17 22 22 H 1.08007 * 119.99758 * 0.02562 * 21 20 18 23 23 C 1.38802 * 120.00199 * 179.97438 * 21 20 18 24 24 N 1.31619 * 120.00039 * 0.02562 * 23 21 20 25 25 Si 1.86801 * 120.00111 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.47098 * 0.02562 * 25 23 21 27 27 H 1.48505 * 109.46789 * 120.00385 * 25 23 21 28 28 H 1.48497 * 109.47414 * 240.00144 * 25 23 21 29 29 C 1.52997 * 109.47452 * 59.99536 * 18 17 16 30 30 H 1.09004 * 109.47097 * 299.99756 * 1 2 3 31 31 H 1.08998 * 109.47128 * 60.00399 * 1 2 3 32 32 H 1.09002 * 109.46494 * 180.02562 * 1 2 3 33 33 H 1.07997 * 120.30376 * 0.02562 * 4 3 2 34 34 H 1.08003 * 119.36005 * 179.97438 * 5 4 3 35 35 H 0.96697 * 113.99496 * 270.28754 * 8 7 6 36 36 H 0.97000 * 119.99750 * 359.97438 * 12 10 9 37 37 H 1.09002 * 109.47398 * 180.02562 * 15 13 12 38 38 H 1.09001 * 109.47194 * 300.00282 * 15 13 12 39 39 H 1.08996 * 109.47853 * 180.02562 * 16 15 13 40 40 H 1.09002 * 109.47153 * 300.00319 * 16 15 13 41 41 H 1.09000 * 109.47486 * 180.02562 * 17 16 15 42 42 H 1.09002 * 109.46716 * 60.00091 * 17 16 15 43 43 H 0.97004 * 120.00223 * 264.99822 * 20 18 17 44 44 H 0.97006 * 119.99987 * 180.02562 * 24 23 21 45 45 H 1.08993 * 109.47194 * 179.97438 * 29 18 17 46 46 H 1.09002 * 109.46695 * 59.99734 * 29 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0441 1.2074 0.0000 4 6 1.3043 2.3867 -0.0005 5 6 1.9624 3.5985 -0.0011 6 7 3.2817 3.6626 -0.0006 7 6 4.0353 2.5768 0.0062 8 8 5.3845 2.6945 0.0125 9 6 3.4471 1.3031 0.0010 10 6 4.2822 0.0906 0.0020 11 8 4.6276 -0.4109 -1.0509 12 7 4.6639 -0.4638 1.1697 13 6 5.4953 -1.6700 1.1707 14 1 5.2167 -2.3041 0.3290 15 6 6.9680 -1.2745 1.0456 16 6 7.3592 -0.3845 2.2270 17 6 7.1460 -1.1497 3.5346 18 6 5.6732 -1.5453 3.6597 19 1 5.0547 -0.6478 3.6589 20 7 5.4691 -2.2785 4.9115 21 6 5.2487 -1.5948 6.0774 22 1 5.2249 -0.5150 6.0739 23 6 5.0548 -2.2894 7.2633 24 7 5.0833 -3.6053 7.2674 25 14 4.7549 -1.3568 8.8538 26 1 4.7708 0.1031 8.5821 27 1 3.4335 -1.7417 9.4116 28 1 5.8212 -1.6904 9.8319 29 6 5.2820 -2.4353 2.4783 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3632 -1.0277 0.0005 33 1 0.2249 2.3528 -0.0005 34 1 1.3880 4.5131 -0.0019 35 1 5.7802 2.7305 -0.8691 36 1 4.3888 -0.0636 2.0094 37 1 7.5866 -2.1720 1.0459 38 1 7.1200 -0.7293 0.1141 39 1 8.4083 -0.1024 2.1377 40 1 6.7407 0.5130 2.2262 41 1 7.4242 -0.5155 4.3763 42 1 7.7645 -2.0472 3.5354 43 1 5.4902 -3.2483 4.9145 44 1 4.9474 -4.0908 8.0962 45 1 4.2330 -2.7174 2.5677 46 1 5.9007 -3.3327 2.4791 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981462462.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:13:39 Heat of formation + Delta-G solvation = -98.425562 kcal Electronic energy + Delta-G solvation = -29878.285711 eV Core-core repulsion = 25767.563924 eV Total energy + Delta-G solvation = -4110.721787 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.19626 -40.89855 -39.87725 -39.09030 -37.82346 -36.15580 -34.49596 -33.14743 -32.78258 -31.68145 -30.68229 -29.49660 -28.45804 -25.88741 -25.60199 -23.91565 -23.39754 -22.66246 -22.22648 -20.31532 -20.14433 -19.31297 -18.90864 -18.62787 -18.13925 -17.21555 -16.99063 -16.67690 -16.35705 -16.20642 -15.91774 -15.69691 -15.58435 -15.27145 -14.99266 -14.87883 -14.72368 -14.15962 -13.90363 -13.64743 -13.51521 -13.15302 -13.05073 -12.91742 -12.90573 -12.82830 -12.56593 -12.49146 -12.22295 -12.03561 -11.96951 -11.61763 -11.49112 -11.37086 -11.02246 -10.86228 -10.56815 -10.16809 -10.07452 -10.05209 -8.99480 -7.93676 -5.21652 -0.31674 0.06912 1.43668 1.46604 1.47368 1.56928 1.86923 2.11575 2.41510 2.55811 2.74229 3.39619 3.44434 3.63473 3.73993 3.79855 3.85134 3.90388 3.93747 4.27037 4.27719 4.29577 4.34656 4.34799 4.36445 4.49110 4.55138 4.65741 4.70571 4.71645 4.79330 4.83963 4.93497 5.09034 5.17748 5.22246 5.23460 5.35990 5.45571 5.50422 5.54095 5.64523 6.03218 6.28795 6.41646 6.42851 6.79080 7.08201 7.35119 8.10849 8.34342 9.29957 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.011069 B = 0.003485 C = 0.003182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2529.001961 B = 8032.184041 C = 8797.926054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 O -0.327 6.327 3 C 0.206 3.794 4 C -0.262 4.262 5 C 0.176 3.824 6 N -0.544 5.544 7 C 0.377 3.623 8 O -0.483 6.483 9 C -0.260 4.260 10 C 0.590 3.410 11 O -0.571 6.571 12 N -0.698 5.698 13 C 0.157 3.843 14 H 0.084 0.916 15 C -0.119 4.119 16 C -0.103 4.103 17 C -0.127 4.127 18 C 0.178 3.822 19 H 0.037 0.963 20 N -0.736 5.736 21 C -0.235 4.235 22 H 0.073 0.927 23 C -0.073 4.073 24 N -0.969 5.969 25 Si 0.967 3.033 26 H -0.268 1.268 27 H -0.293 1.293 28 H -0.295 1.295 29 C -0.120 4.120 30 H 0.079 0.921 31 H 0.083 0.917 32 H 0.115 0.885 33 H 0.187 0.813 34 H 0.209 0.791 35 H 0.422 0.578 36 H 0.403 0.597 37 H 0.083 0.917 38 H 0.064 0.936 39 H 0.069 0.931 40 H 0.055 0.945 41 H 0.039 0.961 42 H 0.052 0.948 43 H 0.373 0.627 44 H 0.250 0.750 45 H 0.060 0.940 46 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.704 12.917 -19.585 25.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.237 6.237 3 C 0.150 3.850 4 C -0.282 4.282 5 C 0.021 3.979 6 N -0.266 5.266 7 C 0.197 3.803 8 O -0.293 6.293 9 C -0.267 4.267 10 C 0.376 3.624 11 O -0.451 6.451 12 N -0.348 5.348 13 C 0.053 3.947 14 H 0.102 0.898 15 C -0.157 4.157 16 C -0.142 4.142 17 C -0.167 4.167 18 C 0.070 3.930 19 H 0.055 0.945 20 N -0.376 5.376 21 C -0.367 4.367 22 H 0.090 0.910 23 C -0.266 4.266 24 N -0.620 5.620 25 Si 0.796 3.204 26 H -0.192 1.192 27 H -0.220 1.220 28 H -0.222 1.222 29 C -0.158 4.158 30 H 0.097 0.903 31 H 0.102 0.898 32 H 0.134 0.866 33 H 0.204 0.796 34 H 0.225 0.775 35 H 0.284 0.716 36 H 0.239 0.761 37 H 0.101 0.899 38 H 0.083 0.917 39 H 0.088 0.912 40 H 0.074 0.926 41 H 0.058 0.942 42 H 0.071 0.929 43 H 0.205 0.795 44 H 0.059 0.941 45 H 0.079 0.921 46 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -8.025 13.217 -19.612 24.974 hybrid contribution -0.547 -0.826 1.160 1.526 sum -8.572 12.391 -18.452 23.822 Atomic orbital electron populations 1.23593 0.74541 1.06298 1.03648 1.86078 1.25097 1.26072 1.86458 1.19336 0.89971 0.86456 0.89189 1.22549 1.03666 0.91165 1.10849 1.23173 0.87890 0.99045 0.87828 1.67392 1.08752 1.31689 1.18814 1.18866 0.85060 0.85506 0.90858 1.84650 1.13757 1.95106 1.35796 1.20334 0.92762 0.95000 1.18642 1.17703 0.78381 0.82692 0.83671 1.90750 1.58001 1.64096 1.32246 1.46144 1.51738 1.28695 1.08217 1.20918 0.90778 0.85426 0.97619 0.89801 1.21835 0.94790 1.00812 0.98275 1.21386 1.01350 0.97990 0.93443 1.22100 0.98390 0.99516 0.96689 1.20333 0.94015 0.93672 0.84990 0.94490 1.42616 1.85920 1.05477 1.03552 1.19606 1.38786 0.91296 0.87006 0.90954 1.25469 1.03935 0.96287 1.00860 1.69816 1.58890 1.06502 1.26754 0.85167 0.76758 0.78253 0.80181 1.19236 1.22049 1.22212 1.21959 1.01910 0.99010 0.92959 0.90268 0.89822 0.86634 0.79632 0.77476 0.71567 0.76117 0.89888 0.91698 0.91185 0.92640 0.94213 0.92919 0.79511 0.94116 0.92125 0.89926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.14 9.84 113.37 1.12 1.25 16 2 O -0.33 -7.18 10.03 -88.07 -0.88 -8.06 16 3 C 0.21 4.48 6.74 23.09 0.16 4.64 16 4 C -0.26 -3.63 9.09 22.42 0.20 -3.42 16 5 C 0.18 2.51 11.15 84.58 0.94 3.46 16 6 N -0.54 -11.82 10.37 -308.27 -3.20 -15.02 16 7 C 0.38 9.25 7.77 85.14 0.66 9.92 16 8 O -0.48 -11.18 13.02 -87.29 -1.14 -12.31 16 9 C -0.26 -6.82 5.66 -19.83 -0.11 -6.93 16 10 C 0.59 17.93 6.38 86.60 0.55 18.48 16 11 O -0.57 -20.33 16.77 -4.12 -0.07 -20.40 16 12 N -0.70 -20.40 4.23 -445.99 -1.89 -22.29 16 13 C 0.16 4.55 2.78 44.99 0.13 4.67 16 14 H 0.08 2.50 7.58 -2.39 -0.02 2.48 16 15 C -0.12 -3.16 5.60 30.59 0.17 -2.99 16 16 C -0.10 -2.94 5.77 30.59 0.18 -2.77 16 17 C -0.13 -4.48 5.50 30.60 0.17 -4.31 16 18 C 0.18 6.87 2.60 44.99 0.12 6.99 16 19 H 0.04 1.46 6.44 -2.39 -0.02 1.44 16 20 N -0.74 -36.59 5.12 -322.93 -1.65 -38.25 16 21 C -0.24 -12.94 9.93 84.03 0.83 -12.11 16 22 H 0.07 3.87 7.83 -2.91 -0.02 3.85 16 23 C -0.07 -4.19 5.50 84.86 0.47 -3.72 16 24 N -0.97 -59.00 13.06 21.65 0.28 -58.72 16 25 Si 0.97 46.09 29.55 68.60 2.03 48.12 16 26 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 27 H -0.29 -13.93 7.11 99.48 0.71 -13.22 16 28 H -0.29 -14.11 7.11 99.48 0.71 -13.40 16 29 C -0.12 -3.89 5.08 30.59 0.16 -3.74 16 30 H 0.08 0.62 7.71 -2.38 -0.02 0.60 16 31 H 0.08 0.53 7.71 -2.39 -0.02 0.51 16 32 H 0.12 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.19 1.06 6.45 -2.91 -0.02 1.04 16 34 H 0.21 1.13 8.06 -2.91 -0.02 1.11 16 35 H 0.42 6.22 9.06 -74.06 -0.67 5.55 16 36 H 0.40 11.98 6.85 -92.71 -0.64 11.34 16 37 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 38 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 39 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 40 H 0.05 1.64 7.60 -2.39 -0.02 1.62 16 41 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 42 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 43 H 0.37 19.93 7.80 -92.71 -0.72 19.21 16 44 H 0.25 14.78 8.31 -92.70 -0.77 14.01 16 45 H 0.06 2.07 8.14 -2.39 -0.02 2.06 16 46 H 0.08 2.61 8.14 -2.39 -0.02 2.59 16 Total: -1.00 -76.38 379.38 -1.77 -78.15 By element: Atomic # 1 Polarization: 40.36 SS G_CDS: -0.99 Total: 39.37 kcal Atomic # 6 Polarization: 3.68 SS G_CDS: 5.73 Total: 9.41 kcal Atomic # 7 Polarization: -127.82 SS G_CDS: -6.45 Total: -134.27 kcal Atomic # 8 Polarization: -38.69 SS G_CDS: -2.09 Total: -40.78 kcal Atomic # 14 Polarization: 46.09 SS G_CDS: 2.03 Total: 48.12 kcal Total: -76.38 -1.77 -78.15 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981462462.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.279 kcal (2) G-P(sol) polarization free energy of solvation -76.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds