Wall clock time and date at job start Tue Mar 31 2020 18:51:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.36017 * 116.99675 * 2 1 4 4 C 1.35853 * 120.31370 * 359.97438 * 3 2 1 5 5 N 1.35439 * 120.77833 * 180.02562 * 4 3 2 6 6 H 0.96993 * 119.29694 * 180.02562 * 5 4 3 7 7 C 1.36435 * 121.40851 * 0.02755 * 5 4 3 8 8 C 1.48064 * 119.71952 * 179.70283 * 7 5 4 9 9 O 1.21519 * 120.00167 * 222.07569 * 8 7 5 10 10 N 1.34774 * 120.00304 * 42.06890 * 8 7 5 11 11 C 1.46928 * 120.62978 * 4.73337 * 10 8 7 12 12 C 1.53619 * 108.54629 * 126.36473 * 11 10 8 13 13 C 1.53050 * 109.23929 * 54.85830 * 12 11 10 14 14 N 1.46500 * 109.44344 * 178.49945 * 13 12 11 15 15 C 1.46502 * 120.00512 * 60.06235 * 14 13 12 16 16 C 1.36939 * 119.99553 * 240.05863 * 14 13 12 17 17 H 1.07998 * 120.00483 * 20.72711 * 16 14 13 18 18 C 1.38811 * 119.99884 * 200.72851 * 16 14 13 19 19 N 1.31615 * 120.00178 * 14.82676 * 18 16 14 20 20 Si 1.86807 * 119.99955 * 194.83294 * 18 16 14 21 21 H 1.48499 * 109.47314 * 94.97836 * 20 18 16 22 22 H 1.48498 * 109.46847 * 214.97866 * 20 18 16 23 23 H 1.48502 * 109.47027 * 334.97850 * 20 18 16 24 24 C 1.53036 * 109.53445 * 298.50962 * 13 12 11 25 25 C 1.46925 * 120.63552 * 185.00960 * 10 8 7 26 26 C 1.36177 * 120.56232 * 359.97438 * 7 5 4 27 27 C 1.41572 * 120.31362 * 180.02562 * 3 2 1 28 28 O 1.22264 * 120.65478 * 359.95244 * 27 3 2 29 29 H 1.08999 * 109.46454 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46803 * 299.99724 * 1 2 3 31 31 H 1.08994 * 109.47245 * 60.00547 * 1 2 3 32 32 H 1.07996 * 119.61111 * 0.02562 * 4 3 2 33 33 H 1.09005 * 109.58767 * 246.20333 * 11 10 8 34 34 H 1.09004 * 109.58427 * 6.61804 * 11 10 8 35 35 H 1.08994 * 109.63381 * 294.86585 * 12 11 10 36 36 H 1.09005 * 109.43450 * 174.72074 * 12 11 10 37 37 H 1.09000 * 109.46198 * 58.53103 * 13 12 11 38 38 H 1.09000 * 109.46842 * 94.67964 * 15 14 13 39 39 H 1.08994 * 109.46867 * 214.68228 * 15 14 13 40 40 H 1.08998 * 109.46487 * 334.67717 * 15 14 13 41 41 H 0.97007 * 120.00102 * 179.97438 * 19 18 16 42 42 H 1.08997 * 109.49904 * 301.41380 * 24 13 12 43 43 H 1.09001 * 109.51968 * 181.33594 * 24 13 12 44 44 H 1.09000 * 109.58653 * 353.37448 * 25 10 8 45 45 H 1.08996 * 109.58689 * 113.65763 * 25 10 8 46 46 H 1.07991 * 120.40618 * 179.97438 * 26 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2120 0.0000 4 6 1.3127 2.3553 -0.0005 5 7 1.9177 3.5671 -0.0010 6 1 1.3730 4.3695 -0.0010 7 6 3.2771 3.6830 -0.0016 8 6 3.8992 5.0266 -0.0089 9 8 4.8634 5.2461 -0.7152 10 7 3.3961 6.0064 0.7679 11 6 2.2972 5.7303 1.7033 12 6 2.7180 6.2006 3.1039 13 6 3.1322 7.6725 3.0383 14 7 3.5003 8.1357 4.3786 15 6 4.6003 7.4910 5.1001 16 6 2.8161 9.1714 4.9569 17 1 1.8268 9.4271 4.6072 18 6 3.3940 9.8925 5.9926 19 7 4.6848 9.7875 6.2274 20 14 2.3398 11.0121 7.0532 21 1 1.9134 10.2807 8.2732 22 1 3.1269 12.2093 7.4435 23 1 1.1412 11.4362 6.2860 24 6 4.3306 7.8255 2.0990 25 6 3.9319 7.3723 0.6910 26 6 4.0667 2.5736 -0.0012 27 6 3.4598 1.2939 -0.0005 28 8 4.1430 0.2799 -0.0002 29 1 -0.3632 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5137 -0.8900 32 1 0.2343 2.2973 -0.0005 33 1 1.4039 6.2690 1.3869 34 1 2.0933 4.6597 1.7216 35 1 3.5583 5.6014 3.4543 36 1 1.8792 6.0890 3.7911 37 1 2.2993 8.2679 2.6643 38 1 5.5214 8.0492 4.9322 39 1 4.3749 7.4741 6.1663 40 1 4.7230 6.4701 4.7384 41 1 5.0888 10.2918 6.9510 42 1 5.1558 7.2110 2.4589 43 1 4.6404 8.8702 2.0709 44 1 4.8071 7.3855 0.0414 45 1 3.1701 8.0417 0.2915 46 1 5.1425 2.6683 -0.0021 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000985536108.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:51:46 Heat of formation + Delta-G solvation = -26.445883 kcal Electronic energy + Delta-G solvation = -29490.750670 eV Core-core repulsion = 25383.150157 eV Total energy + Delta-G solvation = -4107.600514 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.82768 -40.19913 -38.45731 -37.83598 -37.75715 -35.30748 -32.51044 -31.91209 -31.42897 -30.58732 -29.82306 -27.97847 -26.11770 -25.76547 -24.13459 -23.57074 -23.07342 -22.14961 -20.81144 -19.65498 -18.88175 -18.27276 -17.53485 -16.89104 -16.61971 -16.51065 -16.25148 -15.50928 -15.45434 -15.14751 -14.76539 -14.51301 -14.45101 -14.08715 -13.88903 -13.64062 -13.56259 -13.40603 -13.22591 -13.03433 -12.51196 -12.41659 -11.92261 -11.87262 -11.75093 -11.65394 -11.15582 -10.97582 -10.88351 -10.57896 -10.46474 -10.31029 -10.25649 -9.94548 -9.77159 -9.71607 -9.67165 -8.88073 -8.61916 -7.94990 -6.88026 -5.80644 -3.25732 0.53089 0.89145 2.08090 2.37209 2.76853 2.93197 3.31573 3.37883 3.40104 3.43622 3.82437 4.10170 4.35084 4.39558 4.60364 4.67073 4.74438 4.76220 4.97324 5.07931 5.09991 5.17051 5.22468 5.29313 5.35901 5.45812 5.57282 5.65135 5.75987 5.85765 5.94336 6.02465 6.11621 6.26058 6.34449 6.36746 6.40759 6.67362 6.81202 6.84414 6.87596 7.03932 7.31251 7.64754 7.68049 7.72914 7.79879 8.29854 9.14312 9.78245 10.26370 11.24092 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.018367 B = 0.002641 C = 0.002498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1524.070408 B =10600.248484 C =11205.262592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.288 6.288 3 C -0.031 4.031 4 C 0.025 3.975 5 N -0.563 5.563 6 H 0.424 0.576 7 C 0.136 3.864 8 C 0.555 3.445 9 O -0.510 6.510 10 N -0.596 5.596 11 C 0.090 3.910 12 C -0.147 4.147 13 C 0.180 3.820 14 N -0.595 5.595 15 C 0.163 3.837 16 C -0.259 4.259 17 H 0.069 0.931 18 C 0.003 3.997 19 N -0.904 5.904 20 Si 0.904 3.096 21 H -0.288 1.288 22 H -0.291 1.291 23 H -0.280 1.280 24 C -0.147 4.147 25 C 0.113 3.887 26 C -0.222 4.222 27 C 0.402 3.598 28 O -0.497 6.497 29 H 0.103 0.897 30 H 0.055 0.945 31 H 0.054 0.946 32 H 0.170 0.830 33 H 0.076 0.924 34 H 0.080 0.920 35 H 0.066 0.934 36 H 0.077 0.923 37 H 0.064 0.936 38 H 0.029 0.971 39 H 0.042 0.958 40 H -0.002 1.002 41 H 0.253 0.747 42 H 0.062 0.938 43 H 0.080 0.920 44 H 0.090 0.910 45 H 0.072 0.928 46 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.543 -11.842 -13.272 21.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.200 6.200 3 C -0.082 4.082 4 C -0.102 4.102 5 N -0.178 5.178 6 H 0.263 0.737 7 C 0.024 3.976 8 C 0.339 3.661 9 O -0.384 6.384 10 N -0.329 5.329 11 C -0.033 4.033 12 C -0.187 4.187 13 C 0.071 3.929 14 N -0.316 5.316 15 C 0.018 3.982 16 C -0.388 4.388 17 H 0.087 0.913 18 C -0.196 4.196 19 N -0.549 5.549 20 Si 0.734 3.266 21 H -0.216 1.216 22 H -0.218 1.218 23 H -0.205 1.205 24 C -0.187 4.187 25 C -0.009 4.009 26 C -0.249 4.249 27 C 0.292 3.708 28 O -0.381 6.381 29 H 0.121 0.879 30 H 0.074 0.926 31 H 0.072 0.928 32 H 0.187 0.813 33 H 0.094 0.906 34 H 0.098 0.902 35 H 0.085 0.915 36 H 0.096 0.904 37 H 0.082 0.918 38 H 0.047 0.953 39 H 0.061 0.939 40 H 0.017 0.983 41 H 0.063 0.937 42 H 0.081 0.919 43 H 0.098 0.902 44 H 0.109 0.891 45 H 0.090 0.910 46 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -10.463 -12.381 -13.484 21.085 hybrid contribution -1.162 1.228 0.807 1.874 sum -11.625 -11.153 -12.677 20.499 Atomic orbital electron populations 1.23141 0.79101 1.04563 1.00960 1.86287 1.20379 1.24296 1.88998 1.20423 0.94793 0.84688 1.08325 1.21653 0.98789 0.84153 1.05572 1.41032 1.04984 1.08683 1.63140 0.73693 1.20303 0.83035 0.95760 0.98518 1.18000 0.84068 0.82763 0.81249 1.90860 1.25453 1.80536 1.41541 1.48257 1.36014 1.10102 1.38556 1.22292 0.89018 1.01025 0.90941 1.22563 1.02235 1.00334 0.93550 1.20264 0.94730 0.91500 0.86408 1.43968 1.38465 1.37384 1.11830 1.20757 0.91002 0.90776 0.95650 1.19217 0.96847 1.07978 1.14762 0.91321 1.24981 0.95336 0.98401 1.00898 1.70087 1.08789 1.44026 1.32010 0.86252 0.79505 0.80043 0.80797 1.21556 1.21785 1.20489 1.22545 1.00845 1.02255 0.93064 1.21858 0.99780 0.79696 0.99520 1.22378 1.01957 0.90454 1.10071 1.16769 0.86133 0.89750 0.78168 1.90861 1.65723 1.37534 1.43938 0.87887 0.92611 0.92767 0.81264 0.90554 0.90200 0.91520 0.90415 0.91799 0.95297 0.93930 0.98321 0.93690 0.91913 0.90186 0.89125 0.90972 0.81815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.09 9.81 101.05 0.99 1.08 16 2 O -0.29 -3.19 10.33 -35.62 -0.37 -3.56 16 3 C -0.03 -0.34 6.71 -39.17 -0.26 -0.60 16 4 C 0.02 0.17 10.22 -16.81 -0.17 0.00 16 5 N -0.56 -3.85 3.79 -9.58 -0.04 -3.88 16 6 H 0.42 1.74 7.05 -40.82 -0.29 1.45 16 7 C 0.14 1.43 5.69 -82.53 -0.47 0.96 16 8 C 0.55 6.83 7.36 -12.23 -0.09 6.74 16 9 O -0.51 -8.00 16.33 5.35 0.09 -7.91 16 10 N -0.60 -6.72 2.97 -173.54 -0.51 -7.23 16 11 C 0.09 0.85 5.09 -3.49 -0.02 0.83 16 12 C -0.15 -2.02 5.34 -26.38 -0.14 -2.16 16 13 C 0.18 3.10 2.55 -67.89 -0.17 2.92 16 14 N -0.60 -13.56 2.81 -173.44 -0.49 -14.04 16 15 C 0.16 3.79 8.04 59.85 0.48 4.28 16 16 C -0.26 -6.60 9.61 -15.06 -0.14 -6.75 16 17 H 0.07 1.70 7.81 -52.49 -0.41 1.29 16 18 C 0.00 0.07 5.06 -17.43 -0.09 -0.02 16 19 N -0.90 -25.44 10.68 55.49 0.59 -24.85 16 20 Si 0.90 20.90 29.58 -169.99 -5.03 15.87 16 21 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 22 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 23 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 24 C -0.15 -2.34 5.34 -26.61 -0.14 -2.48 16 25 C 0.11 1.41 6.44 -3.71 -0.02 1.39 16 26 C -0.22 -2.81 9.55 -39.03 -0.37 -3.19 16 27 C 0.40 5.75 6.78 -37.02 -0.25 5.50 16 28 O -0.50 -9.12 17.71 -11.15 -0.20 -9.31 16 29 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 0.20 7.66 -51.93 -0.40 -0.19 16 31 H 0.05 0.19 7.66 -51.93 -0.40 -0.21 16 32 H 0.17 0.46 6.21 -52.49 -0.33 0.13 16 33 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 34 H 0.08 0.62 5.07 -51.93 -0.26 0.35 16 35 H 0.07 1.02 6.72 -51.93 -0.35 0.67 16 36 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 37 H 0.06 1.09 7.85 -51.93 -0.41 0.68 16 38 H 0.03 0.74 7.42 -51.93 -0.39 0.36 16 39 H 0.04 1.08 7.20 -51.93 -0.37 0.71 16 40 H 0.00 -0.03 6.46 -51.93 -0.34 -0.37 16 41 H 0.25 6.94 8.31 -40.82 -0.34 6.61 16 42 H 0.06 1.10 7.72 -51.93 -0.40 0.70 16 43 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 44 H 0.09 1.20 7.00 -51.93 -0.36 0.83 16 45 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 46 H 0.16 2.15 8.05 -52.49 -0.42 1.73 16 LS Contribution 368.00 15.07 5.55 5.55 Total: -1.00 -35.02 368.00 -7.65 -42.67 By element: Atomic # 1 Polarization: 4.56 SS G_CDS: -6.37 Total: -1.81 kcal Atomic # 6 Polarization: 9.38 SS G_CDS: -0.88 Total: 8.50 kcal Atomic # 7 Polarization: -49.56 SS G_CDS: -0.45 Total: -50.00 kcal Atomic # 8 Polarization: -20.30 SS G_CDS: -0.48 Total: -20.78 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.03 Total: 15.87 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -35.02 -7.65 -42.67 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000985536108.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.223 kcal (2) G-P(sol) polarization free energy of solvation -35.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds