Wall clock time and date at job start Tue Mar 31 2020 18:51:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.36017 * 116.99675 * 2 1 4 4 C 1.35853 * 120.31370 * 359.97438 * 3 2 1 5 5 N 1.35439 * 120.77833 * 180.02562 * 4 3 2 6 6 H 0.96993 * 119.29694 * 180.02562 * 5 4 3 7 7 C 1.36435 * 121.40851 * 0.02755 * 5 4 3 8 8 C 1.48064 * 119.71952 * 179.70283 * 7 5 4 9 9 O 1.21519 * 120.00167 * 222.07569 * 8 7 5 10 10 N 1.34774 * 120.00304 * 42.06890 * 8 7 5 11 11 C 1.46928 * 120.62978 * 4.73337 * 10 8 7 12 12 C 1.53619 * 108.54629 * 126.36473 * 11 10 8 13 13 C 1.53050 * 109.23929 * 54.85830 * 12 11 10 14 14 N 1.46500 * 109.44344 * 178.49945 * 13 12 11 15 15 C 1.46502 * 120.00512 * 60.06235 * 14 13 12 16 16 C 1.36939 * 119.99553 * 240.05863 * 14 13 12 17 17 H 1.07998 * 120.00483 * 20.72711 * 16 14 13 18 18 C 1.38811 * 119.99884 * 200.72851 * 16 14 13 19 19 N 1.31615 * 120.00178 * 14.82676 * 18 16 14 20 20 Si 1.86807 * 119.99955 * 194.83294 * 18 16 14 21 21 H 1.48499 * 109.47314 * 94.97836 * 20 18 16 22 22 H 1.48498 * 109.46847 * 214.97866 * 20 18 16 23 23 H 1.48502 * 109.47027 * 334.97850 * 20 18 16 24 24 C 1.53036 * 109.53445 * 298.50962 * 13 12 11 25 25 C 1.46925 * 120.63552 * 185.00960 * 10 8 7 26 26 C 1.36177 * 120.56232 * 359.97438 * 7 5 4 27 27 C 1.41572 * 120.31362 * 180.02562 * 3 2 1 28 28 O 1.22264 * 120.65478 * 359.95244 * 27 3 2 29 29 H 1.08999 * 109.46454 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46803 * 299.99724 * 1 2 3 31 31 H 1.08994 * 109.47245 * 60.00547 * 1 2 3 32 32 H 1.07996 * 119.61111 * 0.02562 * 4 3 2 33 33 H 1.09005 * 109.58767 * 246.20333 * 11 10 8 34 34 H 1.09004 * 109.58427 * 6.61804 * 11 10 8 35 35 H 1.08994 * 109.63381 * 294.86585 * 12 11 10 36 36 H 1.09005 * 109.43450 * 174.72074 * 12 11 10 37 37 H 1.09000 * 109.46198 * 58.53103 * 13 12 11 38 38 H 1.09000 * 109.46842 * 94.67964 * 15 14 13 39 39 H 1.08994 * 109.46867 * 214.68228 * 15 14 13 40 40 H 1.08998 * 109.46487 * 334.67717 * 15 14 13 41 41 H 0.97007 * 120.00102 * 179.97438 * 19 18 16 42 42 H 1.08997 * 109.49904 * 301.41380 * 24 13 12 43 43 H 1.09001 * 109.51968 * 181.33594 * 24 13 12 44 44 H 1.09000 * 109.58653 * 353.37448 * 25 10 8 45 45 H 1.08996 * 109.58689 * 113.65763 * 25 10 8 46 46 H 1.07991 * 120.40618 * 179.97438 * 26 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2120 0.0000 4 6 1.3127 2.3553 -0.0005 5 7 1.9177 3.5671 -0.0010 6 1 1.3730 4.3695 -0.0010 7 6 3.2771 3.6830 -0.0016 8 6 3.8992 5.0266 -0.0089 9 8 4.8634 5.2461 -0.7152 10 7 3.3961 6.0064 0.7679 11 6 2.2972 5.7303 1.7033 12 6 2.7180 6.2006 3.1039 13 6 3.1322 7.6725 3.0383 14 7 3.5003 8.1357 4.3786 15 6 4.6003 7.4910 5.1001 16 6 2.8161 9.1714 4.9569 17 1 1.8268 9.4271 4.6072 18 6 3.3940 9.8925 5.9926 19 7 4.6848 9.7875 6.2274 20 14 2.3398 11.0121 7.0532 21 1 1.9134 10.2807 8.2732 22 1 3.1269 12.2093 7.4435 23 1 1.1412 11.4362 6.2860 24 6 4.3306 7.8255 2.0990 25 6 3.9319 7.3723 0.6910 26 6 4.0667 2.5736 -0.0012 27 6 3.4598 1.2939 -0.0005 28 8 4.1430 0.2799 -0.0002 29 1 -0.3632 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5137 -0.8900 32 1 0.2343 2.2973 -0.0005 33 1 1.4039 6.2690 1.3869 34 1 2.0933 4.6597 1.7216 35 1 3.5583 5.6014 3.4543 36 1 1.8792 6.0890 3.7911 37 1 2.2993 8.2679 2.6643 38 1 5.5214 8.0492 4.9322 39 1 4.3749 7.4741 6.1663 40 1 4.7230 6.4701 4.7384 41 1 5.0888 10.2918 6.9510 42 1 5.1558 7.2110 2.4589 43 1 4.6404 8.8702 2.0709 44 1 4.8071 7.3855 0.0414 45 1 3.1701 8.0417 0.2915 46 1 5.1425 2.6683 -0.0021 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000985536108.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:51:45 Heat of formation + Delta-G solvation = -50.920679 kcal Electronic energy + Delta-G solvation = -29491.811977 eV Core-core repulsion = 25383.150157 eV Total energy + Delta-G solvation = -4108.661820 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.70480 -41.15000 -39.32116 -38.91112 -38.80512 -36.82466 -34.05021 -32.87770 -32.48978 -31.65747 -31.24629 -28.42938 -28.03753 -26.96416 -25.32813 -24.46706 -24.07342 -23.55113 -21.86434 -20.71851 -19.84125 -19.14678 -18.75612 -18.43688 -17.61679 -17.34231 -17.05165 -16.91130 -16.43215 -16.28279 -15.74592 -15.58588 -15.31213 -15.25818 -15.10702 -14.99468 -14.66708 -14.58516 -14.42064 -13.98884 -13.85331 -13.70277 -13.21172 -13.11560 -12.79875 -12.66334 -12.38614 -12.34843 -12.26131 -12.20519 -12.04210 -11.82635 -11.69310 -11.51116 -11.19667 -10.71673 -10.60345 -10.52606 -9.88079 -8.80324 -8.75923 -7.79752 -5.25802 -0.41823 0.13531 1.20589 1.38711 1.48739 1.50318 1.58686 1.91664 2.32572 2.51786 2.53727 2.95638 3.34129 3.53596 3.60008 3.67255 3.76249 3.86010 4.03140 4.11738 4.23606 4.35492 4.37491 4.42252 4.49845 4.50615 4.56503 4.65567 4.70131 4.80238 4.85029 4.90133 4.94210 5.00560 5.08433 5.23056 5.28587 5.42957 5.48768 5.56991 5.68056 5.72629 5.81167 6.06636 6.28927 6.34868 6.68913 6.91157 7.17048 7.91118 8.35261 9.23908 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.018367 B = 0.002641 C = 0.002498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1524.070408 B =10600.248484 C =11205.262592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.005 3.995 2 O -0.325 6.325 3 C -0.060 4.060 4 C 0.074 3.926 5 N -0.533 5.533 6 H 0.446 0.554 7 C 0.156 3.844 8 C 0.559 3.441 9 O -0.547 6.547 10 N -0.590 5.590 11 C 0.095 3.905 12 C -0.139 4.139 13 C 0.173 3.827 14 N -0.611 5.611 15 C 0.182 3.818 16 C -0.254 4.254 17 H 0.082 0.918 18 C -0.059 4.059 19 N -0.943 5.943 20 Si 0.965 3.035 21 H -0.292 1.292 22 H -0.303 1.303 23 H -0.261 1.261 24 C -0.138 4.138 25 C 0.124 3.876 26 C -0.243 4.243 27 C 0.380 3.620 28 O -0.571 6.571 29 H 0.109 0.891 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.230 0.770 33 H 0.124 0.876 34 H 0.103 0.897 35 H 0.045 0.955 36 H 0.084 0.916 37 H 0.077 0.923 38 H -0.005 1.005 39 H 0.012 0.988 40 H 0.024 0.976 41 H 0.244 0.756 42 H 0.037 0.963 43 H 0.057 0.943 44 H 0.081 0.919 45 H 0.105 0.895 46 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.641 -11.257 -14.670 24.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 O -0.238 6.238 3 C -0.110 4.110 4 C -0.055 4.055 5 N -0.148 5.148 6 H 0.290 0.710 7 C 0.041 3.959 8 C 0.344 3.656 9 O -0.423 6.423 10 N -0.322 5.322 11 C -0.027 4.027 12 C -0.179 4.179 13 C 0.066 3.934 14 N -0.333 5.333 15 C 0.037 3.963 16 C -0.384 4.384 17 H 0.100 0.900 18 C -0.254 4.254 19 N -0.590 5.590 20 Si 0.795 3.205 21 H -0.219 1.219 22 H -0.230 1.230 23 H -0.185 1.185 24 C -0.178 4.178 25 C 0.002 3.998 26 C -0.271 4.271 27 C 0.275 3.725 28 O -0.461 6.461 29 H 0.127 0.873 30 H 0.097 0.903 31 H 0.097 0.903 32 H 0.246 0.754 33 H 0.141 0.859 34 H 0.121 0.879 35 H 0.063 0.937 36 H 0.102 0.898 37 H 0.095 0.905 38 H 0.013 0.987 39 H 0.031 0.969 40 H 0.042 0.958 41 H 0.054 0.946 42 H 0.056 0.944 43 H 0.076 0.924 44 H 0.100 0.900 45 H 0.123 0.877 46 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -15.660 -11.756 -14.912 24.613 hybrid contribution 0.318 1.119 1.207 1.676 sum -15.342 -10.637 -13.705 23.159 Atomic orbital electron populations 1.23519 0.76180 1.06035 1.03157 1.86243 1.23458 1.24633 1.89481 1.20129 0.93498 0.86435 1.10937 1.22317 1.00677 0.82124 1.00342 1.41187 1.03684 1.10113 1.59809 0.71011 1.19867 0.84419 0.93899 0.97730 1.18114 0.83447 0.83113 0.80888 1.90859 1.27052 1.81128 1.43294 1.48269 1.36181 1.09360 1.38415 1.22494 0.89421 1.03087 0.87654 1.22382 1.01689 0.97068 0.96735 1.20581 0.95220 0.93862 0.83747 1.44221 1.37909 1.36950 1.14171 1.20383 0.90067 0.91666 0.94200 1.19656 0.97274 1.07403 1.14096 0.90015 1.25752 0.96267 1.00623 1.02746 1.70267 1.10493 1.45637 1.32630 0.85265 0.78380 0.77779 0.79126 1.21909 1.23042 1.18519 1.22347 0.99598 1.00554 0.95311 1.21705 1.00732 0.80761 0.96596 1.22173 1.01632 0.91092 1.12155 1.17272 0.88134 0.89273 0.77773 1.90813 1.67330 1.39219 1.48747 0.87257 0.90291 0.90265 0.75432 0.85853 0.87894 0.93650 0.89781 0.90504 0.98659 0.96899 0.95783 0.94641 0.94447 0.92448 0.90018 0.87698 0.83866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.03 9.81 113.37 1.11 1.15 16 2 O -0.32 -6.71 10.33 -78.61 -0.81 -7.53 16 3 C -0.06 -1.20 6.71 22.54 0.15 -1.04 16 4 C 0.07 0.57 10.22 83.58 0.85 1.43 16 5 N -0.53 -4.25 3.79 -184.22 -0.70 -4.95 16 6 H 0.45 0.13 7.05 -92.71 -0.65 -0.52 16 7 C 0.16 2.85 5.69 40.56 0.23 3.08 16 8 C 0.56 12.40 7.36 86.85 0.64 13.04 16 9 O -0.55 -16.74 16.33 -3.78 -0.06 -16.80 16 10 N -0.59 -11.05 2.97 -821.24 -2.44 -13.49 16 11 C 0.10 1.24 5.09 86.51 0.44 1.68 16 12 C -0.14 -3.33 5.34 30.82 0.16 -3.16 16 13 C 0.17 5.53 2.55 45.02 0.11 5.65 16 14 N -0.61 -27.49 2.81 -702.63 -1.98 -29.47 16 15 C 0.18 8.73 8.04 127.77 1.03 9.76 16 16 C -0.25 -12.73 9.61 84.03 0.81 -11.92 16 17 H 0.08 3.82 7.81 -2.91 -0.02 3.80 16 18 C -0.06 -3.17 5.06 84.86 0.43 -2.74 16 19 N -0.94 -54.78 10.68 21.65 0.23 -54.55 16 20 Si 0.97 42.97 29.58 68.60 2.03 45.00 16 21 H -0.29 -13.01 7.11 99.48 0.71 -12.30 16 22 H -0.30 -13.95 7.11 99.48 0.71 -13.24 16 23 H -0.26 -10.68 7.11 99.48 0.71 -9.98 16 24 C -0.14 -4.27 5.34 30.67 0.16 -4.10 16 25 C 0.12 2.74 6.44 86.36 0.56 3.30 16 26 C -0.24 -6.30 9.55 22.63 0.22 -6.09 16 27 C 0.38 11.27 6.78 23.93 0.16 11.43 16 28 O -0.57 -22.91 17.71 8.95 0.16 -22.75 16 29 H 0.11 0.57 8.14 -2.39 -0.02 0.55 16 30 H 0.08 0.15 7.66 -2.39 -0.02 0.13 16 31 H 0.08 0.12 7.66 -2.39 -0.02 0.10 16 32 H 0.23 -0.75 6.21 -2.91 -0.02 -0.77 16 33 H 0.12 0.67 8.14 -2.38 -0.02 0.66 16 34 H 0.10 0.91 5.07 -2.38 -0.01 0.90 16 35 H 0.04 1.29 6.72 -2.39 -0.02 1.28 16 36 H 0.08 1.98 8.14 -2.38 -0.02 1.96 16 37 H 0.08 2.29 7.85 -2.39 -0.02 2.27 16 38 H 0.00 -0.27 7.42 -2.39 -0.02 -0.28 16 39 H 0.01 0.66 7.20 -2.39 -0.02 0.64 16 40 H 0.02 1.00 6.46 -2.39 -0.02 0.98 16 41 H 0.24 13.98 8.31 -92.70 -0.77 13.21 16 42 H 0.04 1.33 7.72 -2.39 -0.02 1.31 16 43 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 44 H 0.08 2.03 7.00 -2.39 -0.02 2.02 16 45 H 0.11 1.74 8.14 -2.39 -0.02 1.72 16 46 H 0.14 4.17 8.05 -2.92 -0.02 4.14 16 Total: -1.00 -86.40 368.00 3.87 -82.53 By element: Atomic # 1 Polarization: 0.19 SS G_CDS: 0.37 Total: 0.56 kcal Atomic # 6 Polarization: 14.38 SS G_CDS: 7.07 Total: 21.45 kcal Atomic # 7 Polarization: -97.58 SS G_CDS: -4.88 Total: -102.46 kcal Atomic # 8 Polarization: -46.37 SS G_CDS: -0.72 Total: -47.08 kcal Atomic # 14 Polarization: 42.97 SS G_CDS: 2.03 Total: 45.00 kcal Total: -86.40 3.87 -82.53 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000985536108.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.613 kcal (2) G-P(sol) polarization free energy of solvation -86.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.534 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds