Wall clock time and date at job start Tue Mar 31 2020 18:51:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35526 * 116.99877 * 2 1 4 4 C 1.38824 * 120.89412 * 359.97403 * 3 2 1 5 5 C 1.38715 * 119.19538 * 180.02562 * 4 3 2 6 6 O 1.35518 * 119.47268 * 180.02562 * 5 4 3 7 7 N 1.32594 * 121.05675 * 0.02724 * 5 4 3 8 8 C 1.31614 * 121.97355 * 359.97438 * 7 5 4 9 9 C 1.39540 * 120.67394 * 359.97438 * 8 7 5 10 10 C 1.47336 * 120.55767 * 179.74663 * 9 8 7 11 11 O 1.21615 * 119.99964 * 229.13915 * 10 9 8 12 12 N 1.34782 * 120.00364 * 49.13470 * 10 9 8 13 13 C 1.46924 * 120.62513 * 5.13802 * 12 10 9 14 14 C 1.53628 * 108.54121 * 126.36992 * 13 12 10 15 15 C 1.53046 * 109.23955 * 54.85914 * 14 13 12 16 16 N 1.46499 * 109.45129 * 178.49922 * 15 14 13 17 17 C 1.46505 * 119.99826 * 60.05518 * 16 15 14 18 18 C 1.36939 * 119.99950 * 240.06174 * 16 15 14 19 19 H 1.07998 * 119.99755 * 22.28513 * 18 16 15 20 20 C 1.38808 * 119.99690 * 202.28676 * 18 16 15 21 21 N 1.31625 * 120.00426 * 13.39120 * 20 18 16 22 22 Si 1.86802 * 119.99992 * 193.38559 * 20 18 16 23 23 H 1.48501 * 109.46900 * 0.02562 * 22 20 18 24 24 H 1.48496 * 109.46881 * 119.99950 * 22 20 18 25 25 H 1.48500 * 109.47362 * 240.00076 * 22 20 18 26 26 C 1.53042 * 109.53370 * 298.51276 * 15 14 13 27 27 C 1.46921 * 120.63309 * 185.42707 * 12 10 9 28 28 H 1.08997 * 109.46946 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.46991 * 300.00412 * 1 2 3 30 30 H 1.09006 * 109.46824 * 60.00361 * 1 2 3 31 31 H 1.07994 * 120.40173 * 0.05092 * 4 3 2 32 32 H 0.96703 * 114.00041 * 270.02789 * 6 5 4 33 33 H 1.08008 * 119.66058 * 180.02562 * 8 7 5 34 34 H 1.09001 * 109.59033 * 246.20495 * 13 12 10 35 35 H 1.08997 * 109.59081 * 6.63499 * 13 12 10 36 36 H 1.08995 * 109.63433 * 294.86772 * 14 13 12 37 37 H 1.09000 * 109.43436 * 174.72062 * 14 13 12 38 38 H 1.08996 * 109.46224 * 58.52805 * 15 14 13 39 39 H 1.09005 * 109.46744 * 87.75908 * 17 16 15 40 40 H 1.08993 * 109.46867 * 207.74953 * 17 16 15 41 41 H 1.08995 * 109.47077 * 327.75633 * 17 16 15 42 42 H 0.96997 * 120.00066 * 179.97438 * 21 20 18 43 43 H 1.09008 * 109.49939 * 301.40926 * 26 15 14 44 44 H 1.09004 * 109.52677 * 181.33486 * 26 15 14 45 45 H 1.09001 * 109.58667 * 353.36424 * 27 12 10 46 46 H 1.08999 * 109.58952 * 113.65059 * 27 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0443 1.2076 0.0000 4 6 1.3064 2.3835 -0.0005 5 6 1.9725 3.6002 -0.0011 6 8 1.2578 4.7516 -0.0011 7 7 3.2973 3.6548 -0.0016 8 6 4.0396 2.5680 -0.0012 9 6 3.4501 1.3033 0.0004 10 6 4.2835 0.0883 -0.0047 11 8 4.0555 -0.8022 -0.8010 12 7 5.2987 -0.0364 0.8731 13 6 5.5173 0.9778 1.9135 14 6 5.5681 0.2744 3.2783 15 6 6.6317 -0.8254 3.2397 16 7 6.7090 -1.4756 4.5502 17 6 5.5301 -2.1437 5.1071 18 6 7.8831 -1.4587 5.2547 19 1 8.6238 -0.6993 5.0517 20 6 8.1213 -2.4176 6.2297 21 7 7.3572 -3.4870 6.3017 22 14 9.5264 -2.1906 7.4395 23 1 10.2289 -0.9150 7.1485 24 1 8.9874 -2.1539 8.8227 25 1 10.4794 -3.3220 7.3095 26 6 6.2578 -1.8618 2.1775 27 6 6.2114 -1.1856 0.8038 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8901 31 1 0.2270 2.3513 -0.0001 32 1 1.0497 5.0854 -0.8845 33 1 5.1161 2.6560 -0.0012 34 1 6.4602 1.4928 1.7294 35 1 4.6978 1.6962 1.9015 36 1 4.5963 -0.1670 3.4992 37 1 5.8229 0.9998 4.0509 38 1 7.5989 -0.3868 2.9943 39 1 5.5004 -3.1768 4.7604 40 1 5.5835 -2.1273 6.1956 41 1 4.6295 -1.6244 4.7795 42 1 7.5240 -4.1572 6.9828 43 1 5.2794 -2.2832 2.4089 44 1 7.0029 -2.6573 2.1665 45 1 5.8499 -1.8949 0.0593 46 1 7.2092 -0.8437 0.5286 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000985658826.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:51:51 Heat of formation + Delta-G solvation = -36.890901 kcal Electronic energy + Delta-G solvation = -29761.250484 eV Core-core repulsion = 25653.197040 eV Total energy + Delta-G solvation = -4108.053444 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.41234 -39.70543 -39.07079 -37.47432 -37.06811 -35.04176 -32.44133 -31.92385 -31.36277 -30.30443 -29.57771 -27.94550 -25.99284 -25.40355 -24.02219 -23.52956 -22.71524 -22.04242 -20.23356 -19.63826 -18.79614 -17.96748 -17.45616 -17.09985 -16.73405 -16.40670 -15.87322 -15.55255 -15.03545 -14.92060 -14.87546 -14.82826 -14.05382 -13.91373 -13.55679 -13.38401 -13.24862 -13.01557 -12.86381 -12.34997 -12.30014 -12.20723 -11.97910 -11.89493 -11.64525 -11.44006 -10.95724 -10.85791 -10.78050 -10.36745 -10.26514 -10.18012 -10.09012 -9.84043 -9.68805 -9.60301 -9.45999 -9.11711 -8.54380 -8.42919 -6.74076 -5.72777 -3.16191 0.33248 0.86329 2.59953 2.70324 2.99146 3.10503 3.37996 3.44496 3.45631 3.47255 4.14432 4.27146 4.46456 4.50210 4.67077 4.75580 4.76417 5.00932 5.07412 5.09982 5.21268 5.26429 5.30254 5.39933 5.46197 5.52392 5.63309 5.79177 5.89205 5.90949 6.04993 6.17791 6.27569 6.40063 6.55808 6.63352 6.72967 6.83996 7.00312 7.03324 7.03872 7.41747 7.46594 7.51228 7.71861 7.82151 8.22036 8.41744 9.24900 9.88867 10.38439 11.33561 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.018064 B = 0.002817 C = 0.002723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1549.682316 B = 9935.735304 C =10278.469734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.285 6.285 3 C 0.230 3.770 4 C -0.284 4.284 5 C 0.362 3.638 6 O -0.479 6.479 7 N -0.526 5.526 8 C 0.195 3.805 9 C -0.221 4.221 10 C 0.572 3.428 11 O -0.530 6.530 12 N -0.599 5.599 13 C 0.105 3.895 14 C -0.146 4.146 15 C 0.179 3.821 16 N -0.596 5.596 17 C 0.164 3.836 18 C -0.253 4.253 19 H 0.069 0.931 20 C 0.000 4.000 21 N -0.907 5.907 22 Si 0.903 3.097 23 H -0.278 1.278 24 H -0.290 1.290 25 H -0.291 1.291 26 C -0.144 4.144 27 C 0.115 3.885 28 H 0.108 0.892 29 H 0.062 0.938 30 H 0.060 0.940 31 H 0.151 0.849 32 H 0.405 0.595 33 H 0.175 0.825 34 H 0.073 0.927 35 H 0.076 0.924 36 H 0.062 0.938 37 H 0.074 0.926 38 H 0.064 0.936 39 H 0.018 0.982 40 H 0.053 0.947 41 H -0.006 1.006 42 H 0.251 0.749 43 H 0.059 0.941 44 H 0.076 0.924 45 H 0.086 0.914 46 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.416 12.910 -15.154 24.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.194 6.194 3 C 0.174 3.826 4 C -0.307 4.307 5 C 0.185 3.815 6 O -0.287 6.287 7 N -0.248 5.248 8 C 0.037 3.963 9 C -0.227 4.227 10 C 0.358 3.642 11 O -0.407 6.407 12 N -0.332 5.332 13 C -0.019 4.019 14 C -0.186 4.186 15 C 0.071 3.929 16 N -0.317 5.317 17 C 0.019 3.981 18 C -0.383 4.383 19 H 0.087 0.913 20 C -0.198 4.198 21 N -0.552 5.552 22 Si 0.733 3.267 23 H -0.203 1.203 24 H -0.217 1.217 25 H -0.218 1.218 26 C -0.184 4.184 27 C -0.007 4.007 28 H 0.127 0.873 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.169 0.831 32 H 0.264 0.736 33 H 0.192 0.808 34 H 0.091 0.909 35 H 0.094 0.906 36 H 0.080 0.920 37 H 0.093 0.907 38 H 0.082 0.918 39 H 0.036 0.964 40 H 0.072 0.928 41 H 0.013 0.987 42 H 0.062 0.938 43 H 0.078 0.922 44 H 0.095 0.905 45 H 0.105 0.895 46 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -13.108 12.821 -14.818 23.575 hybrid contribution -0.094 -0.557 0.397 0.691 sum -13.203 12.263 -14.422 23.080 Atomic orbital electron populations 1.23268 0.77338 1.05045 1.01709 1.86249 1.22092 1.25101 1.85953 1.19052 0.90676 0.84843 0.88022 1.22064 1.02194 0.91605 1.14804 1.18959 0.86587 0.84957 0.90969 1.84714 1.71224 1.38666 1.34134 1.67237 1.06453 1.33020 1.18091 1.22690 1.00040 0.84475 0.89088 1.20417 0.91521 0.96491 1.14308 1.17627 0.79838 0.85562 0.81137 1.90789 1.69295 1.40878 1.39749 1.48077 1.29406 1.24980 1.30723 1.22069 1.01474 0.90342 0.87986 1.22535 1.01804 0.99683 0.94618 1.20288 0.95801 0.90917 0.85924 1.43968 1.09046 1.63793 1.14882 1.20721 0.84972 0.94006 0.98367 1.19279 0.95696 1.08487 1.14816 0.91342 1.25000 0.98479 0.95237 1.01069 1.70094 1.40617 1.09255 1.35244 0.86204 0.81783 0.77418 0.81246 1.20326 1.21707 1.21802 1.22487 1.02492 0.99957 0.93513 1.21733 0.92105 0.87471 0.99387 0.87321 0.91971 0.92090 0.83125 0.73612 0.80792 0.90898 0.90593 0.91976 0.90724 0.91817 0.96417 0.92829 0.98735 0.93840 0.92211 0.90547 0.89514 0.91429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 9.84 101.05 0.99 1.15 16 2 O -0.29 -3.57 9.68 -24.49 -0.24 -3.81 16 3 C 0.23 2.78 6.71 -38.36 -0.26 2.52 16 4 C -0.28 -2.71 9.02 -39.19 -0.35 -3.06 16 5 C 0.36 3.67 7.73 -17.05 -0.13 3.54 16 6 O -0.48 -3.86 13.54 -18.25 -0.25 -4.10 16 7 N -0.53 -6.02 10.37 -13.04 -0.14 -6.15 16 8 C 0.20 2.16 8.74 -17.16 -0.15 2.01 16 9 C -0.22 -2.86 4.83 -104.70 -0.51 -3.37 16 10 C 0.57 8.83 6.98 -12.56 -0.09 8.74 16 11 O -0.53 -9.89 16.03 -0.96 -0.02 -9.90 16 12 N -0.60 -8.71 2.97 -173.81 -0.52 -9.23 16 13 C 0.10 1.36 5.32 -3.48 -0.02 1.34 16 14 C -0.15 -2.40 5.32 -26.38 -0.14 -2.54 16 15 C 0.18 3.49 2.56 -67.89 -0.17 3.31 16 16 N -0.60 -14.55 2.81 -173.43 -0.49 -15.04 16 17 C 0.16 4.05 8.09 59.85 0.48 4.53 16 18 C -0.25 -6.81 9.59 -15.06 -0.14 -6.96 16 19 H 0.07 1.79 7.82 -52.49 -0.41 1.38 16 20 C 0.00 0.01 5.05 -17.43 -0.09 -0.08 16 21 N -0.91 -26.36 10.73 55.49 0.60 -25.77 16 22 Si 0.90 21.67 29.57 -169.99 -5.03 16.64 16 23 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 24 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 25 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 26 C -0.14 -2.63 5.34 -26.61 -0.14 -2.77 16 27 C 0.12 1.75 6.44 -3.71 -0.02 1.73 16 28 H 0.11 0.65 8.14 -51.93 -0.42 0.22 16 29 H 0.06 0.37 7.71 -51.93 -0.40 -0.03 16 30 H 0.06 0.33 7.71 -51.93 -0.40 -0.08 16 31 H 0.15 1.02 6.45 -52.49 -0.34 0.68 16 32 H 0.41 1.08 9.06 45.56 0.41 1.50 16 33 H 0.18 1.55 7.35 -52.48 -0.39 1.17 16 34 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.08 0.90 5.14 -51.93 -0.27 0.64 16 36 H 0.06 1.11 6.73 -51.93 -0.35 0.76 16 37 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 38 H 0.06 1.23 7.86 -51.93 -0.41 0.82 16 39 H 0.02 0.47 7.77 -51.93 -0.40 0.07 16 40 H 0.05 1.44 6.79 -51.93 -0.35 1.09 16 41 H -0.01 -0.13 6.46 -51.93 -0.34 -0.46 16 42 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 43 H 0.06 1.18 7.72 -51.92 -0.40 0.78 16 44 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 45 H 0.09 1.38 7.00 -51.93 -0.36 1.02 16 46 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 369.16 15.07 5.56 5.56 Total: -1.00 -35.09 369.16 -6.90 -41.98 By element: Atomic # 1 Polarization: 5.36 SS G_CDS: -5.65 Total: -0.29 kcal Atomic # 6 Polarization: 10.83 SS G_CDS: -0.74 Total: 10.10 kcal Atomic # 7 Polarization: -55.64 SS G_CDS: -0.54 Total: -56.18 kcal Atomic # 8 Polarization: -17.31 SS G_CDS: -0.50 Total: -17.81 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.03 Total: 16.64 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -35.09 -6.90 -41.98 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000985658826.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.093 kcal (2) G-P(sol) polarization free energy of solvation -35.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds