Wall clock time and date at job start Tue Mar 31 2020 18:51:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35526 * 116.99877 * 2 1 4 4 C 1.38824 * 120.89412 * 359.97403 * 3 2 1 5 5 C 1.38715 * 119.19538 * 180.02562 * 4 3 2 6 6 O 1.35518 * 119.47268 * 180.02562 * 5 4 3 7 7 N 1.32594 * 121.05675 * 0.02724 * 5 4 3 8 8 C 1.31614 * 121.97355 * 359.97438 * 7 5 4 9 9 C 1.39540 * 120.67394 * 359.97438 * 8 7 5 10 10 C 1.47336 * 120.55767 * 179.74663 * 9 8 7 11 11 O 1.21615 * 119.99964 * 229.13915 * 10 9 8 12 12 N 1.34782 * 120.00364 * 49.13470 * 10 9 8 13 13 C 1.46924 * 120.62513 * 5.13802 * 12 10 9 14 14 C 1.53628 * 108.54121 * 126.36992 * 13 12 10 15 15 C 1.53046 * 109.23955 * 54.85914 * 14 13 12 16 16 N 1.46499 * 109.45129 * 178.49922 * 15 14 13 17 17 C 1.46505 * 119.99826 * 60.05518 * 16 15 14 18 18 C 1.36939 * 119.99950 * 240.06174 * 16 15 14 19 19 H 1.07998 * 119.99755 * 22.28513 * 18 16 15 20 20 C 1.38808 * 119.99690 * 202.28676 * 18 16 15 21 21 N 1.31625 * 120.00426 * 13.39120 * 20 18 16 22 22 Si 1.86802 * 119.99992 * 193.38559 * 20 18 16 23 23 H 1.48501 * 109.46900 * 0.02562 * 22 20 18 24 24 H 1.48496 * 109.46881 * 119.99950 * 22 20 18 25 25 H 1.48500 * 109.47362 * 240.00076 * 22 20 18 26 26 C 1.53042 * 109.53370 * 298.51276 * 15 14 13 27 27 C 1.46921 * 120.63309 * 185.42707 * 12 10 9 28 28 H 1.08997 * 109.46946 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.46991 * 300.00412 * 1 2 3 30 30 H 1.09006 * 109.46824 * 60.00361 * 1 2 3 31 31 H 1.07994 * 120.40173 * 0.05092 * 4 3 2 32 32 H 0.96703 * 114.00041 * 270.02789 * 6 5 4 33 33 H 1.08008 * 119.66058 * 180.02562 * 8 7 5 34 34 H 1.09001 * 109.59033 * 246.20495 * 13 12 10 35 35 H 1.08997 * 109.59081 * 6.63499 * 13 12 10 36 36 H 1.08995 * 109.63433 * 294.86772 * 14 13 12 37 37 H 1.09000 * 109.43436 * 174.72062 * 14 13 12 38 38 H 1.08996 * 109.46224 * 58.52805 * 15 14 13 39 39 H 1.09005 * 109.46744 * 87.75908 * 17 16 15 40 40 H 1.08993 * 109.46867 * 207.74953 * 17 16 15 41 41 H 1.08995 * 109.47077 * 327.75633 * 17 16 15 42 42 H 0.96997 * 120.00066 * 179.97438 * 21 20 18 43 43 H 1.09008 * 109.49939 * 301.40926 * 26 15 14 44 44 H 1.09004 * 109.52677 * 181.33486 * 26 15 14 45 45 H 1.09001 * 109.58667 * 353.36424 * 27 12 10 46 46 H 1.08999 * 109.58952 * 113.65059 * 27 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0443 1.2076 0.0000 4 6 1.3064 2.3835 -0.0005 5 6 1.9725 3.6002 -0.0011 6 8 1.2578 4.7516 -0.0011 7 7 3.2973 3.6548 -0.0016 8 6 4.0396 2.5680 -0.0012 9 6 3.4501 1.3033 0.0004 10 6 4.2835 0.0883 -0.0047 11 8 4.0555 -0.8022 -0.8010 12 7 5.2987 -0.0364 0.8731 13 6 5.5173 0.9778 1.9135 14 6 5.5681 0.2744 3.2783 15 6 6.6317 -0.8254 3.2397 16 7 6.7090 -1.4756 4.5502 17 6 5.5301 -2.1437 5.1071 18 6 7.8831 -1.4587 5.2547 19 1 8.6238 -0.6993 5.0517 20 6 8.1213 -2.4176 6.2297 21 7 7.3572 -3.4870 6.3017 22 14 9.5264 -2.1906 7.4395 23 1 10.2289 -0.9150 7.1485 24 1 8.9874 -2.1539 8.8227 25 1 10.4794 -3.3220 7.3095 26 6 6.2578 -1.8618 2.1775 27 6 6.2114 -1.1856 0.8038 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8901 31 1 0.2270 2.3513 -0.0001 32 1 1.0497 5.0854 -0.8845 33 1 5.1161 2.6560 -0.0012 34 1 6.4602 1.4928 1.7294 35 1 4.6978 1.6962 1.9015 36 1 4.5963 -0.1670 3.4992 37 1 5.8229 0.9998 4.0509 38 1 7.5989 -0.3868 2.9943 39 1 5.5004 -3.1768 4.7604 40 1 5.5835 -2.1273 6.1956 41 1 4.6295 -1.6244 4.7795 42 1 7.5240 -4.1572 6.9828 43 1 5.2794 -2.2832 2.4089 44 1 7.0029 -2.6573 2.1665 45 1 5.8499 -1.8949 0.0593 46 1 7.2092 -0.8437 0.5286 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000985658826.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:51:50 Heat of formation + Delta-G solvation = -64.364371 kcal Electronic energy + Delta-G solvation = -29762.441823 eV Core-core repulsion = 25653.197040 eV Total energy + Delta-G solvation = -4109.244783 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.27502 -40.83594 -39.82391 -38.89147 -37.83502 -36.69400 -34.02790 -32.93560 -32.44072 -31.57932 -31.06411 -28.58253 -28.03786 -26.72543 -25.21155 -24.45829 -23.87010 -23.57307 -21.54743 -20.38453 -20.08434 -18.88114 -18.74562 -18.35945 -17.96689 -17.35804 -16.99912 -16.77353 -16.27653 -16.03066 -15.76047 -15.71503 -15.57563 -15.15139 -15.10922 -14.82788 -14.50897 -14.26780 -13.92996 -13.74814 -13.59100 -13.19026 -13.08143 -12.96093 -12.82758 -12.64550 -12.58504 -12.52095 -12.34722 -12.19232 -12.01461 -11.82292 -11.62213 -11.32229 -11.16527 -10.62057 -10.59425 -10.23256 -10.01727 -9.66754 -8.75872 -7.81690 -5.27077 -0.46598 0.06875 1.47942 1.49547 1.53525 1.59750 1.92628 1.99307 2.35217 2.52714 2.64395 3.33039 3.33890 3.42643 3.61640 3.70330 3.87361 3.93758 4.12265 4.15544 4.18096 4.28915 4.29414 4.37051 4.38877 4.42569 4.55228 4.62354 4.67586 4.71770 4.78268 4.84379 4.92572 4.99485 5.10316 5.18463 5.23607 5.37866 5.49225 5.59112 5.66667 5.70195 6.01434 6.33629 6.36679 6.52543 6.76189 7.06154 7.17090 7.90051 8.35585 9.23795 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.018064 B = 0.002817 C = 0.002723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1549.682316 B = 9935.735304 C =10278.469734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.318 6.318 3 C 0.219 3.781 4 C -0.276 4.276 5 C 0.367 3.633 6 O -0.483 6.483 7 N -0.541 5.541 8 C 0.205 3.795 9 C -0.246 4.246 10 C 0.573 3.427 11 O -0.571 6.571 12 N -0.599 5.599 13 C 0.113 3.887 14 C -0.135 4.135 15 C 0.174 3.826 16 N -0.611 5.611 17 C 0.184 3.816 18 C -0.256 4.256 19 H 0.078 0.922 20 C -0.058 4.058 21 N -0.943 5.943 22 Si 0.968 3.032 23 H -0.262 1.262 24 H -0.295 1.295 25 H -0.296 1.296 26 C -0.132 4.132 27 C 0.125 3.875 28 H 0.116 0.884 29 H 0.076 0.924 30 H 0.081 0.919 31 H 0.179 0.821 32 H 0.428 0.572 33 H 0.195 0.805 34 H 0.105 0.895 35 H 0.093 0.907 36 H 0.044 0.956 37 H 0.078 0.922 38 H 0.071 0.929 39 H -0.012 1.012 40 H 0.025 0.975 41 H 0.018 0.982 42 H 0.246 0.754 43 H 0.035 0.965 44 H 0.056 0.944 45 H 0.077 0.923 46 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.697 15.963 -16.056 26.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 O -0.228 6.228 3 C 0.163 3.837 4 C -0.297 4.297 5 C 0.190 3.810 6 O -0.295 6.295 7 N -0.264 5.264 8 C 0.046 3.954 9 C -0.253 4.253 10 C 0.362 3.638 11 O -0.451 6.451 12 N -0.331 5.331 13 C -0.009 4.009 14 C -0.175 4.175 15 C 0.067 3.933 16 N -0.333 5.333 17 C 0.038 3.962 18 C -0.387 4.387 19 H 0.096 0.904 20 C -0.252 4.252 21 N -0.590 5.590 22 Si 0.797 3.203 23 H -0.186 1.186 24 H -0.222 1.222 25 H -0.223 1.223 26 C -0.172 4.172 27 C 0.003 3.997 28 H 0.134 0.866 29 H 0.095 0.905 30 H 0.100 0.900 31 H 0.196 0.804 32 H 0.292 0.708 33 H 0.212 0.788 34 H 0.123 0.877 35 H 0.111 0.889 36 H 0.063 0.937 37 H 0.096 0.904 38 H 0.090 0.910 39 H 0.006 0.994 40 H 0.044 0.956 41 H 0.036 0.964 42 H 0.055 0.945 43 H 0.054 0.946 44 H 0.074 0.926 45 H 0.096 0.904 46 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -13.408 15.940 -15.760 26.120 hybrid contribution -0.128 -1.447 0.614 1.577 sum -13.536 14.493 -15.146 24.953 Atomic orbital electron populations 1.23576 0.75040 1.06227 1.03402 1.86209 1.24687 1.25914 1.86008 1.19282 0.90723 0.85543 0.88151 1.22234 1.03395 0.90383 1.13723 1.19140 0.86457 0.85724 0.89643 1.84668 1.70742 1.37823 1.36272 1.67322 1.07217 1.32964 1.18899 1.22923 1.00893 0.83576 0.87958 1.20344 0.91856 0.95957 1.17119 1.18001 0.79515 0.85905 0.80383 1.90759 1.70240 1.42649 1.41426 1.48117 1.29123 1.24869 1.30959 1.22142 1.03886 0.89710 0.85201 1.22358 0.99393 0.98671 0.97117 1.20538 0.97411 0.91517 0.83827 1.44213 1.08245 1.63962 1.16838 1.20372 0.86391 0.92897 0.96495 1.19677 0.96245 1.08082 1.14657 0.90438 1.25783 1.01141 0.95214 1.03080 1.70264 1.42610 1.10185 1.35938 0.85179 0.78898 0.77632 0.78594 1.18595 1.22204 1.22304 1.22278 1.00352 0.99313 0.95295 1.21569 0.93666 0.87737 0.96778 0.86602 0.90546 0.90004 0.80417 0.70823 0.78849 0.87722 0.88862 0.93749 0.90370 0.91039 0.99364 0.95574 0.96368 0.94501 0.94581 0.92564 0.90442 0.88787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.14 9.84 113.37 1.12 1.26 16 2 O -0.32 -7.77 9.68 -82.34 -0.80 -8.57 16 3 C 0.22 4.97 6.71 23.06 0.15 5.13 16 4 C -0.28 -4.51 9.02 22.52 0.20 -4.31 16 5 C 0.37 6.36 7.73 84.69 0.65 7.02 16 6 O -0.48 -6.15 13.54 -88.21 -1.19 -7.34 16 7 N -0.54 -10.87 10.37 -307.95 -3.19 -14.06 16 8 C 0.20 4.01 8.74 85.04 0.74 4.75 16 9 C -0.25 -6.02 4.83 -19.92 -0.10 -6.12 16 10 C 0.57 17.29 6.98 86.64 0.61 17.90 16 11 O -0.57 -21.50 16.03 1.87 0.03 -21.47 16 12 N -0.60 -16.54 2.97 -822.05 -2.44 -18.98 16 13 C 0.11 2.63 5.32 86.51 0.46 3.09 16 14 C -0.14 -4.24 5.32 30.82 0.16 -4.07 16 15 C 0.17 6.64 2.56 45.02 0.12 6.75 16 16 N -0.61 -30.08 2.81 -702.62 -1.98 -32.06 16 17 C 0.18 9.36 8.09 127.77 1.03 10.39 16 18 C -0.26 -13.78 9.59 84.03 0.81 -12.97 16 19 H 0.08 3.96 7.82 -2.91 -0.02 3.93 16 20 C -0.06 -3.22 5.05 84.86 0.43 -2.80 16 21 N -0.94 -56.47 10.73 21.65 0.23 -56.24 16 22 Si 0.97 44.87 29.57 68.60 2.03 46.90 16 23 H -0.26 -11.30 7.11 99.48 0.71 -10.60 16 24 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 25 H -0.30 -13.83 7.11 99.48 0.71 -13.12 16 26 C -0.13 -4.87 5.34 30.67 0.16 -4.71 16 27 C 0.13 3.71 6.44 86.36 0.56 4.27 16 28 H 0.12 1.26 8.14 -2.39 -0.02 1.24 16 29 H 0.08 0.74 7.71 -2.39 -0.02 0.73 16 30 H 0.08 0.68 7.71 -2.38 -0.02 0.67 16 31 H 0.18 1.78 6.45 -2.91 -0.02 1.76 16 32 H 0.43 0.79 9.06 -74.05 -0.67 0.12 16 33 H 0.19 2.81 7.35 -2.91 -0.02 2.79 16 34 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 35 H 0.09 1.94 5.14 -2.39 -0.01 1.92 16 36 H 0.04 1.54 6.73 -2.39 -0.02 1.53 16 37 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 38 H 0.07 2.63 7.86 -2.39 -0.02 2.61 16 39 H -0.01 -0.67 7.77 -2.38 -0.02 -0.69 16 40 H 0.03 1.44 6.79 -2.39 -0.02 1.42 16 41 H 0.02 0.82 6.46 -2.39 -0.02 0.80 16 42 H 0.25 14.35 8.31 -92.71 -0.77 13.58 16 43 H 0.04 1.47 7.72 -2.38 -0.02 1.46 16 44 H 0.06 2.27 8.14 -2.39 -0.02 2.26 16 45 H 0.08 2.48 7.00 -2.39 -0.02 2.47 16 46 H 0.09 2.32 8.14 -2.39 -0.02 2.31 16 Total: -1.00 -78.05 369.16 0.15 -77.90 By element: Atomic # 1 Polarization: 7.99 SS G_CDS: 0.35 Total: 8.34 kcal Atomic # 6 Polarization: 18.47 SS G_CDS: 7.11 Total: 25.57 kcal Atomic # 7 Polarization: -113.96 SS G_CDS: -7.37 Total: -121.33 kcal Atomic # 8 Polarization: -35.42 SS G_CDS: -1.96 Total: -37.38 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.90 kcal Total: -78.05 0.15 -77.90 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000985658826.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.536 kcal (2) G-P(sol) polarization free energy of solvation -78.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.901 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds