Wall clock time and date at job start Tue Mar 31 2020 18:51:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.36938 * 119.99988 * 2 1 4 4 H 1.08000 * 120.00231 * 213.87733 * 3 2 1 5 5 C 1.38811 * 120.00127 * 33.88290 * 3 2 1 6 6 N 1.31622 * 119.99998 * 5.50364 * 5 3 2 7 7 Si 1.86804 * 120.00177 * 185.50521 * 5 3 2 8 8 H 1.48500 * 109.46760 * 359.97438 * 7 5 3 9 9 H 1.48493 * 109.47177 * 119.99915 * 7 5 3 10 10 H 1.48500 * 109.47022 * 239.99744 * 7 5 3 11 11 C 1.46502 * 120.00265 * 179.97438 * 2 1 3 12 12 C 1.53042 * 109.45611 * 60.00122 * 11 2 1 13 13 C 1.53189 * 109.31389 * 178.62902 * 12 11 2 14 14 N 1.46932 * 108.77138 * 54.63589 * 13 12 11 15 15 C 1.34779 * 120.62935 * 126.37488 * 14 13 12 16 16 O 1.21495 * 120.00334 * 4.75618 * 15 14 13 17 17 C 1.48326 * 119.99738 * 184.76281 * 15 14 13 18 18 N 1.31600 * 127.15722 * 353.86067 * 17 15 14 19 19 O 1.21575 * 111.54732 * 180.02562 * 18 17 15 20 20 C 1.32814 * 111.51317 * 359.94553 * 19 18 17 21 21 C 1.35705 * 106.70604 * 0.09356 * 20 19 18 22 22 C 1.50037 * 123.86597 * 179.79215 * 21 20 19 23 23 O 1.43618 * 107.82333 * 345.28047 * 22 21 20 24 24 C 1.42999 * 114.38700 * 50.02287 * 23 22 21 25 25 C 1.50675 * 130.82438 * 180.11061 * 20 19 18 26 26 C 1.46925 * 118.73782 * 306.63947 * 14 13 12 27 27 C 1.52761 * 109.00630 * 53.31514 * 26 14 13 28 28 H 1.09005 * 109.47123 * 265.05482 * 1 2 3 29 29 H 1.09005 * 109.47444 * 25.04664 * 1 2 3 30 30 H 1.08996 * 109.47170 * 145.04900 * 1 2 3 31 31 H 0.97000 * 120.00135 * 180.02562 * 6 5 3 32 32 H 1.08999 * 109.46091 * 179.97438 * 11 2 1 33 33 H 1.09001 * 109.49686 * 58.67613 * 12 11 2 34 34 H 1.09007 * 109.49713 * 298.58187 * 12 11 2 35 35 H 1.08995 * 109.58839 * 294.85259 * 13 12 11 36 36 H 1.09000 * 109.70555 * 174.48720 * 13 12 11 37 37 H 1.08999 * 109.79173 * 225.70445 * 22 21 20 38 38 H 1.08996 * 109.79096 * 104.86241 * 22 21 20 39 39 H 1.09000 * 109.39309 * 49.71074 * 24 23 22 40 40 H 1.08992 * 109.39987 * 169.54268 * 24 23 22 41 41 H 1.08993 * 109.82489 * 44.56984 * 25 20 19 42 42 H 1.09000 * 109.87115 * 283.66823 * 25 20 19 43 43 H 1.09004 * 109.58393 * 173.14604 * 26 14 13 44 44 H 1.09000 * 109.58917 * 293.57170 * 26 14 13 45 45 H 1.08997 * 109.56270 * 185.54862 * 27 26 14 46 46 H 1.08995 * 109.35852 * 65.49754 * 27 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.0921 1.2654 -0.5213 5 6 1.6324 2.2860 0.6702 6 7 0.5408 2.1616 1.3950 7 14 2.4856 3.9430 0.5434 8 1 3.6836 3.8177 -0.3251 9 1 1.5510 4.9374 -0.0420 10 1 2.9006 4.3908 1.8971 11 6 2.1975 -1.2687 0.0006 12 6 1.8276 -2.0715 -1.2488 13 6 2.6209 -3.3819 -1.2623 14 7 2.3843 -4.0910 0.0026 15 6 1.9570 -5.3692 0.0037 16 8 1.8467 -5.9739 -1.0443 17 6 1.6214 -6.0379 1.2845 18 7 1.7931 -5.5610 2.4990 19 8 1.4190 -6.3495 3.3453 20 6 0.9446 -7.4628 2.7981 21 6 1.0542 -7.3139 1.4537 22 6 0.6310 -8.3554 0.4599 23 8 0.4463 -9.5904 1.1692 24 6 -0.3728 -9.4842 2.3365 25 6 0.3742 -8.7057 3.4305 26 6 2.6165 -3.3782 1.2662 27 6 1.8285 -2.0696 1.2514 28 1 -0.3634 -0.0886 1.0239 29 1 -0.3634 0.9311 -0.4351 30 1 -0.3633 -0.8423 -0.5887 31 1 0.1791 2.9304 1.8630 32 1 3.2691 -1.0693 0.0000 33 1 2.0691 -1.4908 -2.1391 34 1 0.7602 -2.2925 -1.2364 35 1 3.6839 -3.1644 -1.3659 36 1 2.2918 -4.0022 -2.0960 37 1 1.4043 -8.4776 -0.2985 38 1 -0.3053 -8.0569 -0.0114 39 1 -1.2950 -8.9603 2.0851 40 1 -0.6117 -10.4823 2.7033 41 1 -0.3177 -8.4312 4.2267 42 1 1.1796 -9.3183 3.8356 43 1 2.2822 -3.9950 2.1005 44 1 3.6792 -3.1604 1.3730 45 1 2.0707 -1.4876 2.1406 46 1 0.7613 -2.2906 1.2402 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000985797583.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:51:34 Heat of formation + Delta-G solvation = 26.218947 kcal Electronic energy + Delta-G solvation = -29840.917591 eV Core-core repulsion = 25735.600796 eV Total energy + Delta-G solvation = -4105.316795 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -45.38347 -40.05739 -39.24635 -37.57004 -35.13561 -34.39244 -33.57623 -32.21944 -31.20396 -30.51513 -29.79794 -26.94914 -25.98213 -25.60044 -24.46399 -24.00786 -22.71474 -21.95799 -21.09367 -20.00925 -18.67369 -18.16109 -17.74159 -17.07706 -16.73953 -16.47612 -15.85648 -15.81891 -15.34208 -15.09494 -15.00167 -14.26202 -14.05884 -13.94192 -13.67512 -13.47202 -13.34518 -13.21397 -13.13025 -12.58089 -12.30747 -12.13210 -11.88042 -11.61931 -11.54064 -11.21168 -10.93639 -10.82344 -10.78492 -10.63622 -10.39258 -10.28744 -10.26119 -10.20582 -10.04464 -9.85672 -9.53534 -9.47282 -8.61622 -8.49910 -6.60286 -5.77101 -3.31536 0.85717 1.31614 2.43483 2.82369 3.04887 3.27230 3.34903 3.42480 3.44302 3.73591 4.06077 4.26660 4.43102 4.46097 4.53914 4.68450 4.81114 4.99024 5.06343 5.17437 5.24382 5.29534 5.33345 5.36058 5.41569 5.47675 5.49564 5.64254 5.70089 5.79556 5.93256 6.11749 6.23718 6.30031 6.38712 6.50478 6.59470 6.62533 6.82302 6.98364 7.02729 7.32988 7.33940 7.67514 7.72494 7.79915 8.02278 8.46491 9.23651 9.83783 10.40045 11.28640 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.023717 B = 0.002660 C = 0.002527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.326268 B =10524.767455 C =11078.727986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.162 3.838 2 N -0.592 5.592 3 C -0.260 4.260 4 H 0.063 0.937 5 C 0.010 3.990 6 N -0.902 5.902 7 Si 0.903 3.097 8 H -0.277 1.277 9 H -0.289 1.289 10 H -0.289 1.289 11 C 0.178 3.822 12 C -0.147 4.147 13 C 0.115 3.885 14 N -0.584 5.584 15 C 0.594 3.406 16 O -0.533 6.533 17 C 0.008 3.992 18 N -0.325 5.325 19 O 0.124 5.876 20 C -0.026 4.026 21 C -0.203 4.203 22 C 0.141 3.859 23 O -0.375 6.375 24 C 0.060 3.940 25 C -0.070 4.070 26 C 0.077 3.923 27 C -0.140 4.140 28 H 0.018 0.982 29 H 0.047 0.953 30 H -0.006 1.006 31 H 0.253 0.747 32 H 0.063 0.937 33 H 0.076 0.924 34 H 0.061 0.939 35 H 0.070 0.930 36 H 0.088 0.912 37 H 0.122 0.878 38 H 0.078 0.922 39 H 0.062 0.938 40 H 0.113 0.887 41 H 0.106 0.894 42 H 0.105 0.895 43 H 0.118 0.882 44 H 0.068 0.932 45 H 0.078 0.922 46 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.822 -23.374 3.336 23.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.314 5.314 3 C -0.390 4.390 4 H 0.081 0.919 5 C -0.189 4.189 6 N -0.545 5.545 7 Si 0.732 3.268 8 H -0.202 1.202 9 H -0.216 1.216 10 H -0.216 1.216 11 C 0.069 3.931 12 C -0.187 4.187 13 C -0.007 4.007 14 N -0.316 5.316 15 C 0.379 3.621 16 O -0.409 6.409 17 C -0.150 4.150 18 N -0.032 5.032 19 O 0.057 5.943 20 C -0.091 4.091 21 C -0.208 4.208 22 C 0.064 3.936 23 O -0.293 6.293 24 C -0.017 4.017 25 C -0.108 4.108 26 C -0.046 4.046 27 C -0.180 4.180 28 H 0.036 0.964 29 H 0.066 0.934 30 H 0.013 0.987 31 H 0.063 0.937 32 H 0.082 0.918 33 H 0.094 0.906 34 H 0.080 0.920 35 H 0.088 0.912 36 H 0.106 0.894 37 H 0.140 0.860 38 H 0.096 0.904 39 H 0.080 0.920 40 H 0.131 0.869 41 H 0.124 0.876 42 H 0.123 0.877 43 H 0.135 0.865 44 H 0.087 0.913 45 H 0.096 0.904 46 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -0.400 -22.521 3.236 22.756 hybrid contribution 0.037 1.025 -0.062 1.027 sum -0.363 -21.497 3.174 21.733 Atomic orbital electron populations 1.20694 0.83314 0.96814 0.97417 1.43824 1.01444 1.00139 1.85977 1.19176 1.05306 0.87971 1.26551 0.91884 1.25310 0.97880 0.99213 0.96533 1.70019 1.22250 1.29391 1.32882 0.86222 0.79103 0.84102 0.77345 1.20198 1.21616 1.21583 1.20356 0.96121 0.86203 0.90394 1.22468 1.00144 0.94583 1.01462 1.21775 1.00285 0.93654 0.84948 1.48071 1.63495 1.10814 1.09246 1.16921 0.77873 0.81671 0.85620 1.90751 1.54677 1.64455 1.31011 1.22894 1.04077 0.94547 0.93456 1.74507 1.17121 1.12874 0.98730 1.84703 1.56328 1.20320 1.32957 1.23986 1.01250 0.91447 0.92427 1.21322 1.06500 0.97056 0.95951 1.20986 1.01945 0.79616 0.91011 1.88130 1.70777 1.30730 1.39689 1.22748 0.92733 1.01464 0.84778 1.21070 1.01336 0.88828 0.99553 1.22630 1.00811 0.95495 0.85635 1.22357 0.99674 0.94189 1.01822 0.96378 0.93386 0.98730 0.93724 0.91834 0.90574 0.92014 0.91178 0.89350 0.86018 0.90417 0.91966 0.86878 0.87583 0.87655 0.86486 0.91327 0.90362 0.92521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.02 8.11 59.84 0.49 4.50 16 2 N -0.59 -14.71 2.77 -173.44 -0.48 -15.19 16 3 C -0.26 -7.08 9.46 -15.06 -0.14 -7.22 16 4 H 0.06 1.69 7.83 -52.49 -0.41 1.28 16 5 C 0.01 0.28 5.17 -17.43 -0.09 0.19 16 6 N -0.90 -26.20 11.09 55.49 0.62 -25.59 16 7 Si 0.90 21.66 29.56 -169.99 -5.02 16.64 16 8 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 9 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 10 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 11 C 0.18 3.60 2.56 -67.89 -0.17 3.43 16 12 C -0.15 -2.56 5.29 -26.61 -0.14 -2.71 16 13 C 0.12 1.76 6.42 -3.71 -0.02 1.74 16 14 N -0.58 -9.28 2.98 -173.96 -0.52 -9.79 16 15 C 0.59 9.54 7.72 -12.11 -0.09 9.45 16 16 O -0.53 -9.21 15.68 5.37 0.08 -9.13 16 17 C 0.01 0.11 6.92 -82.90 -0.57 -0.46 16 18 N -0.33 -4.56 8.57 33.26 0.28 -4.28 16 19 O 0.12 1.47 11.17 20.04 0.22 1.69 16 20 C -0.03 -0.26 7.50 -35.23 -0.26 -0.52 16 21 C -0.20 -2.44 6.15 -104.93 -0.65 -3.08 16 22 C 0.14 1.47 6.71 35.69 0.24 1.71 16 23 O -0.38 -3.47 10.76 -35.23 -0.38 -3.85 16 24 C 0.06 0.34 6.77 37.49 0.25 0.59 16 25 C -0.07 -0.39 6.56 -27.56 -0.18 -0.57 16 26 C 0.08 1.22 6.30 -3.93 -0.02 1.20 16 27 C -0.14 -2.63 5.32 -26.84 -0.14 -2.78 16 28 H 0.02 0.48 7.74 -51.93 -0.40 0.08 16 29 H 0.05 1.28 7.23 -51.93 -0.38 0.90 16 30 H -0.01 -0.13 6.48 -51.93 -0.34 -0.46 16 31 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 32 H 0.06 1.30 7.89 -51.93 -0.41 0.89 16 33 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 34 H 0.06 1.15 6.76 -51.92 -0.35 0.79 16 35 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 36 H 0.09 1.33 7.03 -51.93 -0.37 0.96 16 37 H 0.12 1.33 7.92 -51.93 -0.41 0.92 16 38 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 39 H 0.06 0.33 8.10 -51.93 -0.42 -0.10 16 40 H 0.11 0.34 8.14 -51.93 -0.42 -0.08 16 41 H 0.11 0.35 8.14 -51.93 -0.42 -0.08 16 42 H 0.11 0.46 8.14 -51.93 -0.42 0.03 16 43 H 0.12 1.83 3.76 -73.34 -0.28 1.55 16 44 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 45 H 0.08 1.60 8.14 -51.93 -0.42 1.18 16 46 H 0.06 1.13 7.72 -51.93 -0.40 0.73 16 LS Contribution 362.76 15.07 5.47 5.47 Total: -1.00 -32.13 362.76 -7.92 -40.05 By element: Atomic # 1 Polarization: 5.19 SS G_CDS: -6.68 Total: -1.48 kcal Atomic # 6 Polarization: 6.99 SS G_CDS: -1.52 Total: 5.47 kcal Atomic # 7 Polarization: -54.75 SS G_CDS: -0.10 Total: -54.85 kcal Atomic # 8 Polarization: -11.21 SS G_CDS: -0.07 Total: -11.28 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -32.13 -7.92 -40.05 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000985797583.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.266 kcal (2) G-P(sol) polarization free energy of solvation -32.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.047 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds