Wall clock time and date at job start Tue Mar 31 2020 18:51:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.36938 * 119.99988 * 2 1 4 4 H 1.08000 * 120.00231 * 213.87733 * 3 2 1 5 5 C 1.38811 * 120.00127 * 33.88290 * 3 2 1 6 6 N 1.31622 * 119.99998 * 5.50364 * 5 3 2 7 7 Si 1.86804 * 120.00177 * 185.50521 * 5 3 2 8 8 H 1.48500 * 109.46760 * 359.97438 * 7 5 3 9 9 H 1.48493 * 109.47177 * 119.99915 * 7 5 3 10 10 H 1.48500 * 109.47022 * 239.99744 * 7 5 3 11 11 C 1.46502 * 120.00265 * 179.97438 * 2 1 3 12 12 C 1.53042 * 109.45611 * 60.00122 * 11 2 1 13 13 C 1.53189 * 109.31389 * 178.62902 * 12 11 2 14 14 N 1.46932 * 108.77138 * 54.63589 * 13 12 11 15 15 C 1.34779 * 120.62935 * 126.37488 * 14 13 12 16 16 O 1.21495 * 120.00334 * 4.75618 * 15 14 13 17 17 C 1.48326 * 119.99738 * 184.76281 * 15 14 13 18 18 N 1.31600 * 127.15722 * 353.86067 * 17 15 14 19 19 O 1.21575 * 111.54732 * 180.02562 * 18 17 15 20 20 C 1.32814 * 111.51317 * 359.94553 * 19 18 17 21 21 C 1.35705 * 106.70604 * 0.09356 * 20 19 18 22 22 C 1.50037 * 123.86597 * 179.79215 * 21 20 19 23 23 O 1.43618 * 107.82333 * 345.28047 * 22 21 20 24 24 C 1.42999 * 114.38700 * 50.02287 * 23 22 21 25 25 C 1.50675 * 130.82438 * 180.11061 * 20 19 18 26 26 C 1.46925 * 118.73782 * 306.63947 * 14 13 12 27 27 C 1.52761 * 109.00630 * 53.31514 * 26 14 13 28 28 H 1.09005 * 109.47123 * 265.05482 * 1 2 3 29 29 H 1.09005 * 109.47444 * 25.04664 * 1 2 3 30 30 H 1.08996 * 109.47170 * 145.04900 * 1 2 3 31 31 H 0.97000 * 120.00135 * 180.02562 * 6 5 3 32 32 H 1.08999 * 109.46091 * 179.97438 * 11 2 1 33 33 H 1.09001 * 109.49686 * 58.67613 * 12 11 2 34 34 H 1.09007 * 109.49713 * 298.58187 * 12 11 2 35 35 H 1.08995 * 109.58839 * 294.85259 * 13 12 11 36 36 H 1.09000 * 109.70555 * 174.48720 * 13 12 11 37 37 H 1.08999 * 109.79173 * 225.70445 * 22 21 20 38 38 H 1.08996 * 109.79096 * 104.86241 * 22 21 20 39 39 H 1.09000 * 109.39309 * 49.71074 * 24 23 22 40 40 H 1.08992 * 109.39987 * 169.54268 * 24 23 22 41 41 H 1.08993 * 109.82489 * 44.56984 * 25 20 19 42 42 H 1.09000 * 109.87115 * 283.66823 * 25 20 19 43 43 H 1.09004 * 109.58393 * 173.14604 * 26 14 13 44 44 H 1.09000 * 109.58917 * 293.57170 * 26 14 13 45 45 H 1.08997 * 109.56270 * 185.54862 * 27 26 14 46 46 H 1.08995 * 109.35852 * 65.49754 * 27 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.0921 1.2654 -0.5213 5 6 1.6324 2.2860 0.6702 6 7 0.5408 2.1616 1.3950 7 14 2.4856 3.9430 0.5434 8 1 3.6836 3.8177 -0.3251 9 1 1.5510 4.9374 -0.0420 10 1 2.9006 4.3908 1.8971 11 6 2.1975 -1.2687 0.0006 12 6 1.8276 -2.0715 -1.2488 13 6 2.6209 -3.3819 -1.2623 14 7 2.3843 -4.0910 0.0026 15 6 1.9570 -5.3692 0.0037 16 8 1.8467 -5.9739 -1.0443 17 6 1.6214 -6.0379 1.2845 18 7 1.7931 -5.5610 2.4990 19 8 1.4190 -6.3495 3.3453 20 6 0.9446 -7.4628 2.7981 21 6 1.0542 -7.3139 1.4537 22 6 0.6310 -8.3554 0.4599 23 8 0.4463 -9.5904 1.1692 24 6 -0.3728 -9.4842 2.3365 25 6 0.3742 -8.7057 3.4305 26 6 2.6165 -3.3782 1.2662 27 6 1.8285 -2.0696 1.2514 28 1 -0.3634 -0.0886 1.0239 29 1 -0.3634 0.9311 -0.4351 30 1 -0.3633 -0.8423 -0.5887 31 1 0.1791 2.9304 1.8630 32 1 3.2691 -1.0693 0.0000 33 1 2.0691 -1.4908 -2.1391 34 1 0.7602 -2.2925 -1.2364 35 1 3.6839 -3.1644 -1.3659 36 1 2.2918 -4.0022 -2.0960 37 1 1.4043 -8.4776 -0.2985 38 1 -0.3053 -8.0569 -0.0114 39 1 -1.2950 -8.9603 2.0851 40 1 -0.6117 -10.4823 2.7033 41 1 -0.3177 -8.4312 4.2267 42 1 1.1796 -9.3183 3.8356 43 1 2.2822 -3.9950 2.1005 44 1 3.6792 -3.1604 1.3730 45 1 2.0707 -1.4876 2.1406 46 1 0.7613 -2.2906 1.2402 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000985797583.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:51:33 Heat of formation + Delta-G solvation = 6.223801 kcal Electronic energy + Delta-G solvation = -29841.784645 eV Core-core repulsion = 25735.600796 eV Total energy + Delta-G solvation = -4106.183850 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -46.34677 -41.35335 -39.91485 -39.06562 -36.82145 -35.40990 -34.34932 -33.90808 -32.31391 -31.73812 -31.40123 -28.04205 -27.87255 -26.90315 -25.42498 -25.09636 -24.14088 -23.46586 -22.05141 -21.29862 -20.01707 -19.11859 -18.87761 -18.59882 -18.14562 -17.34707 -17.02081 -16.94361 -16.54439 -16.38764 -16.01760 -15.72923 -15.42347 -15.17478 -14.92427 -14.67187 -14.65204 -14.54452 -14.05684 -13.91385 -13.79460 -13.40407 -13.16978 -12.90337 -12.85381 -12.78246 -12.57815 -12.29651 -12.24450 -12.06963 -12.01353 -11.90903 -11.62787 -11.56388 -11.44173 -11.13268 -10.92616 -10.64179 -10.30397 -9.88725 -8.64441 -7.87131 -5.44609 -0.14354 0.41659 1.44603 1.45995 1.50612 1.56409 1.77980 1.87031 2.47646 2.55403 2.75713 3.26637 3.28790 3.46834 3.56597 3.66308 3.74382 3.93508 4.05748 4.07809 4.09902 4.20049 4.28710 4.29484 4.35087 4.43865 4.50542 4.66386 4.67993 4.74248 4.80259 4.84679 4.89002 4.91920 4.92853 4.99679 5.03478 5.15050 5.24527 5.42160 5.48706 5.61004 5.64750 6.00422 6.06618 6.38198 6.65194 6.90975 7.14747 7.82779 8.34272 9.17198 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.023717 B = 0.002660 C = 0.002527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.326268 B =10524.767455 C =11078.727986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.181 3.819 2 N -0.608 5.608 3 C -0.268 4.268 4 H 0.067 0.933 5 C -0.044 4.044 6 N -0.935 5.935 7 Si 0.968 3.032 8 H -0.264 1.264 9 H -0.292 1.292 10 H -0.291 1.291 11 C 0.173 3.827 12 C -0.132 4.132 13 C 0.121 3.879 14 N -0.589 5.589 15 C 0.593 3.407 16 O -0.549 6.549 17 C -0.015 4.015 18 N -0.346 5.346 19 O 0.130 5.870 20 C -0.009 4.009 21 C -0.221 4.221 22 C 0.147 3.853 23 O -0.387 6.387 24 C 0.051 3.949 25 C -0.067 4.067 26 C 0.089 3.911 27 C -0.127 4.127 28 H -0.007 1.007 29 H 0.021 0.979 30 H 0.018 0.982 31 H 0.249 0.751 32 H 0.064 0.936 33 H 0.078 0.922 34 H 0.049 0.951 35 H 0.090 0.910 36 H 0.094 0.906 37 H 0.109 0.891 38 H 0.080 0.920 39 H 0.066 0.934 40 H 0.146 0.854 41 H 0.137 0.863 42 H 0.125 0.875 43 H 0.125 0.875 44 H 0.082 0.918 45 H 0.057 0.943 46 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.262 -25.351 3.909 25.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 N -0.330 5.330 3 C -0.398 4.398 4 H 0.085 0.915 5 C -0.240 4.240 6 N -0.580 5.580 7 Si 0.796 3.204 8 H -0.188 1.188 9 H -0.218 1.218 10 H -0.218 1.218 11 C 0.067 3.933 12 C -0.172 4.172 13 C 0.000 4.000 14 N -0.320 5.320 15 C 0.379 3.621 16 O -0.426 6.426 17 C -0.171 4.171 18 N -0.052 5.052 19 O 0.062 5.938 20 C -0.075 4.075 21 C -0.227 4.227 22 C 0.070 3.930 23 O -0.306 6.306 24 C -0.025 4.025 25 C -0.104 4.104 26 C -0.034 4.034 27 C -0.167 4.167 28 H 0.011 0.989 29 H 0.040 0.960 30 H 0.037 0.963 31 H 0.058 0.942 32 H 0.082 0.918 33 H 0.097 0.903 34 H 0.067 0.933 35 H 0.108 0.892 36 H 0.112 0.888 37 H 0.127 0.873 38 H 0.098 0.902 39 H 0.085 0.915 40 H 0.164 0.836 41 H 0.155 0.845 42 H 0.143 0.857 43 H 0.142 0.858 44 H 0.101 0.899 45 H 0.076 0.924 46 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 0.184 -24.522 3.791 24.815 hybrid contribution -0.183 1.505 -0.191 1.528 sum 0.001 -23.018 3.601 23.298 Atomic orbital electron populations 1.20388 0.83777 0.96287 0.96008 1.44044 1.01481 1.01271 1.86211 1.19502 1.05277 0.89073 1.25967 0.91521 1.26061 0.98658 1.02687 0.96635 1.70180 1.23723 1.30024 1.34066 0.85192 0.78290 0.79738 0.77144 1.18849 1.21849 1.21774 1.20535 0.95624 0.84947 0.92233 1.22268 0.99694 0.95379 0.99889 1.21744 1.00975 0.92272 0.85050 1.48109 1.63692 1.10997 1.09235 1.17141 0.77240 0.81565 0.86158 1.90731 1.55257 1.64810 1.31819 1.22825 1.05605 0.95733 0.92982 1.74387 1.18152 1.13921 0.98776 1.84660 1.55952 1.20794 1.32429 1.24804 0.99108 0.91525 0.92014 1.21570 1.07153 0.96637 0.97361 1.20849 1.01593 0.79858 0.90743 1.88117 1.71611 1.29826 1.41000 1.23114 0.92298 1.03501 0.83588 1.21407 1.02403 0.86594 1.00030 1.22508 1.00957 0.93806 0.86158 1.22128 0.99089 0.95358 1.00111 0.98884 0.95998 0.96326 0.94195 0.91815 0.90320 0.93258 0.89234 0.88778 0.87279 0.90210 0.91529 0.83597 0.84520 0.85665 0.85798 0.89946 0.92431 0.94144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.18 8.11 127.77 1.04 10.22 16 2 N -0.61 -30.61 2.77 -702.64 -1.95 -32.56 16 3 C -0.27 -14.67 9.46 84.03 0.79 -13.88 16 4 H 0.07 3.54 7.83 -2.91 -0.02 3.52 16 5 C -0.04 -2.49 5.17 84.86 0.44 -2.05 16 6 N -0.93 -55.66 11.09 21.65 0.24 -55.42 16 7 Si 0.97 44.90 29.56 68.60 2.03 46.93 16 8 H -0.26 -11.57 7.11 99.48 0.71 -10.86 16 9 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 10 H -0.29 -13.48 7.11 99.48 0.71 -12.78 16 11 C 0.17 7.03 2.56 45.02 0.12 7.14 16 12 C -0.13 -4.55 5.29 30.67 0.16 -4.39 16 13 C 0.12 3.55 6.42 86.36 0.55 4.10 16 14 N -0.59 -18.25 2.98 -822.59 -2.45 -20.70 16 15 C 0.59 18.81 7.72 86.93 0.67 19.48 16 16 O -0.55 -18.82 15.68 -3.70 -0.06 -18.88 16 17 C -0.02 -0.43 6.92 42.46 0.29 -0.14 16 18 N -0.35 -9.46 8.57 -48.98 -0.42 -9.88 16 19 O 0.13 2.87 11.17 81.71 0.91 3.79 16 20 C -0.01 -0.16 7.50 25.09 0.19 0.03 16 21 C -0.22 -5.09 6.15 -20.07 -0.12 -5.21 16 22 C 0.15 2.94 6.71 71.03 0.48 3.42 16 23 O -0.39 -6.37 10.76 -148.98 -1.60 -7.98 16 24 C 0.05 0.41 6.77 72.20 0.49 0.90 16 25 C -0.07 -0.49 6.56 30.06 0.20 -0.29 16 26 C 0.09 2.75 6.30 86.22 0.54 3.30 16 27 C -0.13 -4.82 5.32 30.53 0.16 -4.65 16 28 H -0.01 -0.40 7.74 -2.38 -0.02 -0.41 16 29 H 0.02 1.18 7.23 -2.38 -0.02 1.17 16 30 H 0.02 0.83 6.48 -2.39 -0.02 0.82 16 31 H 0.25 14.36 8.31 -92.71 -0.77 13.59 16 32 H 0.06 2.57 7.89 -2.39 -0.02 2.56 16 33 H 0.08 2.67 8.14 -2.39 -0.02 2.65 16 34 H 0.05 1.81 6.76 -2.38 -0.02 1.79 16 35 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 36 H 0.09 2.70 7.03 -2.39 -0.02 2.69 16 37 H 0.11 2.41 7.92 -2.39 -0.02 2.39 16 38 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 39 H 0.07 0.50 8.10 -2.39 -0.02 0.48 16 40 H 0.15 0.24 8.14 -2.39 -0.02 0.22 16 41 H 0.14 0.26 8.14 -2.39 -0.02 0.24 16 42 H 0.13 0.54 8.14 -2.39 -0.02 0.52 16 43 H 0.13 3.82 3.76 -44.66 -0.17 3.65 16 44 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 45 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 46 H 0.04 1.65 7.72 -2.39 -0.02 1.63 16 Total: -1.00 -70.72 362.76 3.55 -67.17 By element: Atomic # 1 Polarization: 8.69 SS G_CDS: 0.84 Total: 9.53 kcal Atomic # 6 Polarization: 11.99 SS G_CDS: 6.00 Total: 17.99 kcal Atomic # 7 Polarization: -113.98 SS G_CDS: -4.58 Total: -118.56 kcal Atomic # 8 Polarization: -22.32 SS G_CDS: -0.75 Total: -23.07 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 2.03 Total: 46.93 kcal Total: -70.72 3.55 -67.17 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000985797583.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.398 kcal (2) G-P(sol) polarization free energy of solvation -70.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.174 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds