Wall clock time and date at job start Tue Mar 31 2020 19:18:03
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42895 * 1
3 3 C 1.35731 * 116.99878 * 2 1
4 4 C 1.41857 * 126.79117 * 180.32423 * 3 2 1
5 5 C 1.36661 * 103.81549 * 180.13653 * 4 3 2
6 6 C 1.47539 * 126.88374 * 179.88062 * 5 4 3
7 7 O 1.21580 * 119.99465 * 359.70488 * 6 5 4
8 8 N 1.34772 * 120.00444 * 179.71352 * 6 5 4
9 9 C 1.48659 * 125.78422 * 0.02562 * 8 6 5
10 10 C 1.53053 * 103.44535 * 155.62394 * 9 8 6
11 11 H 1.09002 * 110.55793 * 283.27272 * 10 9 8
12 12 C 1.51622 * 116.68044 * 155.89133 * 10 9 8
13 13 C 1.53814 * 107.02120 * 182.59703 * 12 10 9
14 14 C 1.52522 * 111.70114 * 57.53833 * 13 12 10
15 15 C 1.53846 * 111.66319 * 305.95545 * 14 13 12
16 16 H 1.09003 * 109.94096 * 176.66345 * 15 14 13
17 17 N 1.46496 * 109.93955 * 297.81387 * 15 14 13
18 18 C 1.36940 * 119.99710 * 208.58333 * 17 15 14
19 19 H 1.08003 * 120.00306 * 359.72771 * 18 17 15
20 20 C 1.38815 * 119.99665 * 180.02562 * 18 17 15
21 21 N 1.31610 * 120.00210 * 359.72440 * 20 18 17
22 22 Si 1.86800 * 119.99717 * 179.72370 * 20 18 17
23 23 H 1.48493 * 109.47397 * 0.02562 * 22 20 18
24 24 H 1.48503 * 109.46886 * 120.00218 * 22 20 18
25 25 H 1.48502 * 109.47276 * 239.99883 * 22 20 18
26 26 C 1.51438 * 107.11304 * 57.24198 * 15 14 13
27 27 H 1.08998 * 109.87368 * 54.14413 * 26 15 14
28 28 C 1.48240 * 125.78624 * 180.02562 * 8 6 5
29 29 O 1.34668 * 106.23907 * 359.61720 * 5 4 3
30 30 N 1.20873 * 111.63007 * 0.26203 * 29 5 4
31 31 H 1.09011 * 109.46805 * 180.02562 * 1 2 3
32 32 H 1.08996 * 109.47584 * 299.99894 * 1 2 3
33 33 H 1.08998 * 109.47351 * 60.00554 * 1 2 3
34 34 H 1.08006 * 128.09162 * 0.02562 * 4 3 2
35 35 H 1.09008 * 110.62426 * 37.13717 * 9 8 6
36 36 H 1.08998 * 110.76324 * 274.18322 * 9 8 6
37 37 H 1.09004 * 109.94279 * 63.22060 * 12 10 9
38 38 H 1.09000 * 109.94470 * 301.97735 * 12 10 9
39 39 H 1.08997 * 109.03434 * 296.96338 * 13 12 10
40 40 H 1.09007 * 109.03211 * 178.10710 * 13 12 10
41 41 H 1.09001 * 109.04118 * 185.39580 * 14 13 12
42 42 H 1.08996 * 108.98603 * 66.47997 * 14 13 12
43 43 H 0.97000 * 120.00311 * 28.58876 * 17 15 14
44 44 H 0.97000 * 120.00371 * 179.97438 * 21 20 18
45 45 H 1.09001 * 110.17126 * 295.91638 * 28 8 6
46 46 H 1.09002 * 110.16867 * 57.71317 * 28 8 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4289 0.0000 0.0000
3 6 2.0451 1.2094 0.0000
4 6 3.4430 1.4507 -0.0064
5 6 3.5389 2.8139 -0.0002
6 6 4.7782 3.6144 -0.0006
7 8 5.8601 3.0597 -0.0015
8 7 4.7111 4.9605 0.0002
9 6 3.4633 5.7686 0.0020
10 6 3.9024 7.0997 0.6166
11 1 4.0086 7.0058 1.6974
12 6 3.0692 8.3179 0.2688
13 6 3.7381 9.5281 0.9424
14 6 5.1874 9.6921 0.4963
15 6 5.9969 8.4014 0.7099
16 1 7.0098 8.5305 0.3284
17 7 6.0391 8.0684 2.1359
18 6 7.1047 7.3759 2.6459
19 1 7.9120 7.0715 1.9962
20 6 7.1445 7.0599 3.9970
21 7 6.1606 7.4304 4.7888
22 14 8.5944 6.1086 4.6914
23 1 9.5600 5.8134 3.6026
24 1 9.2635 6.9211 5.7390
25 1 8.1126 4.8354 5.2850
26 6 5.2926 7.3017 -0.0568
27 1 5.1605 7.6008 -1.0965
28 6 5.8689 5.8862 -0.0006
29 8 2.2756 3.2803 0.0003
30 7 1.4685 2.3805 0.0004
31 1 -0.3633 -1.0278 0.0005
32 1 -0.3634 0.5138 0.8899
33 1 -0.3634 0.5137 -0.8900
34 1 4.2442 0.7263 -0.0127
35 1 2.6996 5.2943 0.6185
36 1 3.0975 5.9168 -1.0140
37 1 2.0547 8.1950 0.6480
38 1 3.0488 8.4581 -0.8120
39 1 3.7121 9.3925 2.0236
40 1 3.1827 10.4301 0.6850
41 1 5.6464 10.4985 1.0683
42 1 5.2054 9.9522 -0.5620
43 1 5.3122 8.3383 2.7187
44 1 6.1882 7.2093 5.7328
45 1 6.4428 5.7711 0.9190
46 1 6.5028 5.6944 -0.8663
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000992686904.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 19:18:03
Heat of formation + Delta-G solvation = 16.897293 kcal
Electronic energy + Delta-G solvation = -30144.672587 eV
Core-core repulsion = 26038.951575 eV
Total energy + Delta-G solvation = -4105.721012 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 335.168 amu
Computer time = 0.71 seconds
Orbital eigenvalues (eV)
-45.07665 -40.25052 -39.09247 -38.60380 -35.57793 -33.67981 -33.32780 -32.14413
-31.37711 -30.29774 -28.94282 -27.91378 -26.95130 -25.26766 -23.70955 -23.42592
-22.64394 -20.94692 -20.89423 -20.31436 -18.74989 -18.08698 -18.05803 -17.20352
-17.03002 -16.10524 -15.96679 -15.78744 -15.29717 -14.85888 -14.78090 -14.55155
-14.06554 -13.98526 -13.83432 -13.58552 -12.99823 -12.77238 -12.51589 -12.44657
-12.32265 -12.14845 -11.97897 -11.60787 -11.50280 -11.39945 -11.20240 -10.87506
-10.77609 -10.39681 -10.33282 -10.17478 -10.07859 -9.95301 -9.91715 -9.53374
-9.50871 -9.38787 -8.91503 -8.42958 -6.99885 -5.79672 -3.07621 0.71309
1.95624 2.44715 2.51211 3.08789 3.24440 3.44601 3.52463 3.52658
3.92899 4.48843 4.58850 4.63902 4.77417 4.80353 4.84999 5.04650
5.06080 5.09733 5.17606 5.40399 5.47884 5.53199 5.56449 5.59823
5.68748 5.76568 5.83069 5.93135 5.96802 6.00709 6.07460 6.22461
6.29116 6.33478 6.41138 6.56188 6.64575 6.68417 6.70079 6.84139
6.85889 7.04438 7.53031 7.69462 7.84650 8.11056 8.38899 9.51437
10.07420 10.41963 11.42453
Molecular weight = 335.17amu
Principal moments of inertia in cm(-1)
A = 0.011334 B = 0.003807 C = 0.003204
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2469.765236 B = 7352.163778 C = 8736.899242
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.031 3.969
2 O -0.282 6.282
3 C 0.204 3.796
4 C -0.161 4.161
5 C -0.041 4.041
6 C 0.611 3.389
7 O -0.514 6.514
8 N -0.595 5.595
9 C 0.105 3.895
10 C -0.105 4.105
11 H 0.107 0.893
12 C -0.098 4.098
13 C -0.115 4.115
14 C -0.121 4.121
15 C 0.189 3.811
16 H 0.056 0.944
17 N -0.716 5.716
18 C -0.239 4.239
19 H 0.072 0.928
20 C -0.008 4.008
21 N -0.930 5.930
22 Si 0.900 3.100
23 H -0.279 1.279
24 H -0.292 1.292
25 H -0.292 1.292
26 C -0.117 4.117
27 H 0.064 0.936
28 C 0.116 3.884
29 O 0.118 5.882
30 N -0.395 5.395
31 H 0.106 0.894
32 H 0.060 0.940
33 H 0.059 0.941
34 H 0.190 0.810
35 H 0.080 0.920
36 H 0.070 0.930
37 H 0.060 0.940
38 H 0.059 0.941
39 H 0.067 0.933
40 H 0.053 0.947
41 H 0.064 0.936
42 H 0.054 0.946
43 H 0.385 0.615
44 H 0.254 0.746
45 H 0.104 0.896
46 H 0.063 0.937
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -11.609 -5.110 -12.782 18.007
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.064 4.064
2 O -0.188 6.188
3 C 0.007 3.993
4 C -0.184 4.184
5 C -0.107 4.107
6 C 0.395 3.605
7 O -0.390 6.390
8 N -0.327 5.327
9 C -0.017 4.017
10 C -0.125 4.125
11 H 0.125 0.875
12 C -0.136 4.136
13 C -0.153 4.153
14 C -0.160 4.160
15 C 0.078 3.922
16 H 0.074 0.926
17 N -0.357 5.357
18 C -0.370 4.370
19 H 0.090 0.910
20 C -0.205 4.205
21 N -0.578 5.578
22 Si 0.731 3.269
23 H -0.204 1.204
24 H -0.220 1.220
25 H -0.219 1.219
26 C -0.139 4.139
27 H 0.082 0.918
28 C -0.004 4.004
29 O 0.053 5.947
30 N -0.119 5.119
31 H 0.124 0.876
32 H 0.079 0.921
33 H 0.078 0.922
34 H 0.207 0.793
35 H 0.098 0.902
36 H 0.089 0.911
37 H 0.079 0.921
38 H 0.078 0.922
39 H 0.086 0.914
40 H 0.072 0.928
41 H 0.082 0.918
42 H 0.072 0.928
43 H 0.220 0.780
44 H 0.064 0.936
45 H 0.122 0.878
46 H 0.081 0.919
Dipole moment (debyes) X Y Z Total
from point charges -11.992 -5.453 -12.732 18.320
hybrid contribution 0.770 -1.014 0.697 1.452
sum -11.221 -6.467 -12.035 17.680
Atomic orbital electron populations
1.23089 0.76690 1.04160 1.02473 1.86213 1.22679 1.20471 1.89433
1.21859 0.90613 0.85801 1.01031 1.22142 0.94394 0.94925 1.06976
1.24156 0.86942 0.93734 1.05855 1.16036 0.84998 0.80755 0.78692
1.90882 1.26455 1.70453 1.51233 1.48989 1.10109 1.03852 1.69706
1.22287 0.86236 0.92245 1.00935 1.22130 0.95389 0.91930 1.03007
0.87499 1.21283 0.98190 0.94199 0.99956 1.21460 0.95615 0.96855
1.01339 1.21807 0.95272 0.98728 1.00150 1.19877 0.96051 0.89944
0.86329 0.92647 1.42454 1.24329 1.66558 1.02373 1.19244 0.98502
1.27284 0.91962 0.91031 1.24686 0.98011 1.01426 0.96362 1.69647
1.32262 1.51292 1.04560 0.86223 0.82210 0.79452 0.79009 1.20405
1.21960 1.21925 1.22774 0.96967 0.95127 0.99055 0.91803 1.21986
0.87206 0.87458 1.03779 1.85042 1.11951 1.29322 1.68403 1.73965
1.16265 0.96708 1.24999 0.87575 0.92087 0.92181 0.79318 0.90159
0.91140 0.92118 0.92241 0.91395 0.92838 0.91768 0.92761 0.77988
0.93598 0.87812 0.91895
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.25 10.73 101.05 1.08 1.33 16
2 O -0.28 -3.31 10.57 -18.90 -0.20 -3.51 16
3 C 0.20 2.73 8.00 -16.72 -0.13 2.60 16
4 C -0.16 -2.20 10.97 -38.77 -0.43 -2.63 16
5 C -0.04 -0.61 7.07 -36.36 -0.26 -0.86 16
6 C 0.61 10.55 7.86 -12.47 -0.10 10.45 16
7 O -0.51 -10.31 17.25 5.30 0.09 -10.21 16
8 N -0.59 -9.80 3.38 -171.73 -0.58 -10.38 16
9 C 0.11 1.46 5.88 -2.82 -0.02 1.44 16
10 C -0.11 -1.57 2.35 -89.80 -0.21 -1.78 16
11 H 0.11 2.02 6.71 -51.93 -0.35 1.67 16
12 C -0.10 -1.21 5.71 -27.01 -0.15 -1.37 16
13 C -0.12 -1.55 5.58 -26.55 -0.15 -1.70 16
14 C -0.12 -1.75 5.51 -26.54 -0.15 -1.89 16
15 C 0.19 3.28 3.03 -68.28 -0.21 3.08 16
16 H 0.06 1.00 8.06 -51.93 -0.42 0.58 16
17 N -0.72 -15.87 3.94 -53.77 -0.21 -16.08 16
18 C -0.24 -6.12 8.21 -15.06 -0.12 -6.24 16
19 H 0.07 1.81 7.67 -52.48 -0.40 1.41 16
20 C -0.01 -0.23 5.50 -17.43 -0.10 -0.33 16
21 N -0.93 -26.86 13.06 55.49 0.72 -26.14 16
22 Si 0.90 22.23 29.55 -169.99 -5.02 17.21 16
23 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16
24 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16
25 H -0.29 -7.42 7.11 56.52 0.40 -7.01 16
26 C -0.12 -1.81 2.17 -89.95 -0.20 -2.00 16
27 H 0.06 0.86 7.92 -51.93 -0.41 0.45 16
28 C 0.12 2.02 6.63 -3.11 -0.02 2.00 16
29 O 0.12 1.67 8.58 15.48 0.13 1.80 16
30 N -0.39 -5.50 11.50 30.47 0.35 -5.15 16
31 H 0.11 0.55 8.14 -51.92 -0.42 0.12 16
32 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16
33 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16
34 H 0.19 2.25 8.06 -52.48 -0.42 1.82 16
35 H 0.08 1.10 6.33 -51.92 -0.33 0.77 16
36 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16
37 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16
38 H 0.06 0.65 7.98 -51.93 -0.41 0.23 16
39 H 0.07 1.07 7.04 -51.93 -0.37 0.71 16
40 H 0.05 0.62 8.14 -51.92 -0.42 0.20 16
41 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16
42 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16
43 H 0.39 9.18 6.04 -40.82 -0.25 8.93 16
44 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16
45 H 0.10 2.21 6.00 -51.93 -0.31 1.90 16
46 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16
LS Contribution 367.74 15.07 5.54 5.54
Total: -1.00 -30.22 367.74 -6.93 -37.15
By element:
Atomic # 1 Polarization: 14.28 SS G_CDS: -6.61 Total: 7.67 kcal
Atomic # 6 Polarization: 3.24 SS G_CDS: -1.15 Total: 2.10 kcal
Atomic # 7 Polarization: -58.03 SS G_CDS: 0.28 Total: -57.75 kcal
Atomic # 8 Polarization: -11.95 SS G_CDS: 0.02 Total: -11.92 kcal
Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.21 kcal
Total LS contribution 5.54 Total: 5.54 kcal
Total: -30.22 -6.93 -37.15 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000992686904.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 54.052 kcal
(2) G-P(sol) polarization free energy of solvation -30.221 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.831 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.933 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.154 kcal
(6) G-S(sol) free energy of system = (1) + (5) 16.897 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.71 seconds