Wall clock time and date at job start Tue Mar 31 2020 19:18:11
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42894 * 1
3 3 C 1.35736 * 116.99879 * 2 1
4 4 C 1.41861 * 126.78365 * 180.23594 * 3 2 1
5 5 C 1.36667 * 103.80829 * 180.11598 * 4 3 2
6 6 C 1.47540 * 126.88028 * 179.97438 * 5 4 3
7 7 O 1.21581 * 119.99632 * 359.71669 * 6 5 4
8 8 N 1.34771 * 119.99996 * 179.71346 * 6 5 4
9 9 C 1.47069 * 125.44401 * 359.97438 * 8 6 5
10 10 C 1.55071 * 105.85577 * 199.61516 * 9 8 6
11 11 H 1.08996 * 111.61710 * 208.19181 * 10 9 8
12 12 C 1.52898 * 107.37945 * 85.79609 * 10 9 8
13 13 C 1.52856 * 109.62813 * 193.24868 * 12 10 9
14 14 C 1.52649 * 108.65289 * 64.94878 * 13 12 10
15 15 C 1.51503 * 110.88938 * 300.18435 * 14 13 12
16 16 H 1.08995 * 108.30162 * 285.50660 * 15 14 13
17 17 N 1.46501 * 108.30149 * 168.37369 * 15 14 13
18 18 C 1.36937 * 119.99573 * 85.00361 * 17 15 14
19 19 H 1.08004 * 120.00400 * 0.02562 * 18 17 15
20 20 C 1.38810 * 119.99854 * 179.97438 * 18 17 15
21 21 N 1.31618 * 120.00043 * 0.02562 * 20 18 17
22 22 Si 1.86803 * 119.99959 * 179.97438 * 20 18 17
23 23 H 1.48501 * 109.46980 * 60.00508 * 22 20 18
24 24 H 1.48505 * 109.47250 * 179.97438 * 22 20 18
25 25 H 1.48498 * 109.47374 * 299.99947 * 22 20 18
26 26 C 1.49686 * 115.36316 * 47.04077 * 15 14 13
27 27 H 1.09001 * 107.25389 * 200.78829 * 26 15 14
28 28 C 1.47136 * 125.43900 * 180.02562 * 8 6 5
29 29 O 1.34665 * 106.24123 * 359.67145 * 5 4 3
30 30 N 1.20879 * 111.63108 * 0.22147 * 29 5 4
31 31 H 1.08999 * 109.46974 * 180.02562 * 1 2 3
32 32 H 1.09004 * 109.47251 * 300.00048 * 1 2 3
33 33 H 1.08997 * 109.47391 * 59.99857 * 1 2 3
34 34 H 1.07995 * 128.09621 * 0.03404 * 4 3 2
35 35 H 1.08994 * 110.17502 * 318.71029 * 9 8 6
36 36 H 1.09002 * 110.17455 * 80.44512 * 9 8 6
37 37 H 1.08995 * 109.44851 * 313.29613 * 12 10 9
38 38 H 1.09006 * 109.44386 * 73.20315 * 12 10 9
39 39 H 1.09004 * 109.60648 * 184.69503 * 13 12 10
40 40 H 1.09000 * 109.60909 * 305.02930 * 13 12 10
41 41 H 1.08996 * 109.19561 * 60.54844 * 14 13 12
42 42 H 1.08999 * 109.19445 * 179.82204 * 14 13 12
43 43 H 0.96998 * 120.00552 * 264.99977 * 17 15 14
44 44 H 0.97008 * 120.00016 * 179.97438 * 21 20 18
45 45 H 1.08998 * 109.97741 * 299.82489 * 28 8 6
46 46 H 1.08998 * 109.98297 * 61.11654 * 28 8 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4289 0.0000 0.0000
3 6 2.0451 1.2094 0.0000
4 6 3.4431 1.4505 -0.0047
5 6 3.5390 2.8138 0.0002
6 6 4.7784 3.6143 -0.0011
7 8 5.8603 3.0595 -0.0019
8 7 4.7112 4.9603 -0.0016
9 6 3.4721 5.7524 -0.0014
10 6 3.8717 7.1643 -0.5028
11 1 3.2142 7.9346 -0.0996
12 6 3.8272 7.1359 -2.0308
13 6 4.5201 8.3792 -2.5879
14 6 5.9997 8.3212 -2.2169
15 6 6.1782 8.2790 -0.7130
16 1 5.9770 9.2741 -0.3164
17 7 7.5752 7.9451 -0.4247
18 6 8.5225 8.9334 -0.3916
19 1 8.2397 9.9590 -0.5776
20 6 9.8461 8.6172 -0.1179
21 7 10.1907 7.3674 0.1093
22 14 11.1385 9.9653 -0.0736
23 1 10.7830 10.9575 0.9726
24 1 12.4632 9.3710 0.2384
25 1 11.1966 10.6391 -1.3956
26 6 5.3060 7.2999 0.0090
27 1 5.2533 7.6199 1.0497
28 6 5.8660 5.8721 -0.0034
29 8 2.2757 3.2803 -0.0003
30 7 1.4685 2.3805 -0.0005
31 1 -0.3633 -1.0277 0.0005
32 1 -0.3634 0.5139 0.8900
33 1 -0.3634 0.5138 -0.8899
34 1 4.2441 0.7262 -0.0095
35 1 2.7410 5.3069 -0.6760
36 1 3.0643 5.8121 1.0077
37 1 4.3379 6.2433 -2.3922
38 1 2.7892 7.1192 -2.3634
39 1 4.4157 8.4010 -3.6728
40 1 4.0677 9.2733 -2.1590
41 1 6.4444 7.4281 -2.6557
42 1 6.5033 9.2029 -2.6129
43 1 7.8292 7.0241 -0.2572
44 1 11.1158 7.1464 0.3001
45 1 6.4751 5.7034 0.8845
46 1 6.4638 5.7143 -0.9011
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000992686916.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 19:18:11
Heat of formation + Delta-G solvation = 14.810983 kcal
Electronic energy + Delta-G solvation = -29708.701841 eV
Core-core repulsion = 25602.890360 eV
Total energy + Delta-G solvation = -4105.811482 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 335.168 amu
Computer time = 0.70 seconds
Orbital eigenvalues (eV)
-45.22849 -40.59899 -39.21103 -38.68626 -35.67795 -34.01625 -33.47055 -32.31741
-31.61620 -30.67929 -28.85504 -28.02558 -26.85578 -25.40177 -23.72390 -23.63824
-22.82344 -21.62578 -20.91276 -20.58092 -18.57408 -18.26621 -18.21260 -17.16978
-17.08741 -16.26382 -16.06528 -15.90482 -15.70946 -15.07818 -14.94342 -14.61939
-14.03733 -13.91841 -13.83345 -13.64855 -13.28520 -12.92279 -12.70400 -12.61342
-12.54804 -12.26593 -11.99048 -11.85536 -11.73083 -11.39198 -11.03154 -10.97085
-10.85465 -10.79861 -10.35955 -10.26138 -10.16834 -10.10036 -9.86868 -9.68317
-9.65136 -9.54171 -8.86644 -8.63021 -6.96894 -5.74853 -3.04857 0.55330
1.81762 2.32407 2.34695 2.89557 3.09898 3.44736 3.49323 3.50661
3.79147 4.36411 4.49227 4.49985 4.58422 4.69727 4.74770 4.81868
4.85737 4.92304 5.07625 5.25226 5.36239 5.39093 5.44804 5.45300
5.57051 5.64381 5.75164 5.75338 5.81752 5.94982 6.04007 6.12520
6.19410 6.26323 6.37794 6.38279 6.46709 6.56473 6.60026 6.72247
6.91841 7.14685 7.32550 7.69111 7.70854 7.93432 8.42826 9.53918
10.09562 10.43470 11.47279
Molecular weight = 335.17amu
Principal moments of inertia in cm(-1)
A = 0.020324 B = 0.002760 C = 0.002504
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1377.318886 B =10142.357359 C =11177.442342
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.031 3.969
2 O -0.281 6.281
3 C 0.205 3.795
4 C -0.158 4.158
5 C -0.045 4.045
6 C 0.610 3.390
7 O -0.502 6.502
8 N -0.597 5.597
9 C 0.095 3.905
10 C -0.086 4.086
11 H 0.097 0.903
12 C -0.112 4.112
13 C -0.116 4.116
14 C -0.131 4.131
15 C 0.190 3.810
16 H 0.049 0.951
17 N -0.730 5.730
18 C -0.241 4.241
19 H 0.070 0.930
20 C -0.012 4.012
21 N -0.931 5.931
22 Si 0.905 3.095
23 H -0.287 1.287
24 H -0.292 1.292
25 H -0.287 1.287
26 C -0.088 4.088
27 H 0.073 0.927
28 C 0.119 3.881
29 O 0.117 5.883
30 N -0.394 5.394
31 H 0.107 0.893
32 H 0.060 0.940
33 H 0.060 0.940
34 H 0.191 0.809
35 H 0.082 0.918
36 H 0.073 0.927
37 H 0.062 0.938
38 H 0.059 0.941
39 H 0.054 0.946
40 H 0.059 0.941
41 H 0.057 0.943
42 H 0.060 0.940
43 H 0.385 0.615
44 H 0.256 0.744
45 H 0.082 0.918
46 H 0.082 0.918
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -21.941 -8.768 -1.315 23.665
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.064 4.064
2 O -0.187 6.187
3 C 0.008 3.992
4 C -0.181 4.181
5 C -0.111 4.111
6 C 0.394 3.606
7 O -0.378 6.378
8 N -0.329 5.329
9 C -0.028 4.028
10 C -0.106 4.106
11 H 0.116 0.884
12 C -0.149 4.149
13 C -0.155 4.155
14 C -0.171 4.171
15 C 0.080 3.920
16 H 0.067 0.933
17 N -0.372 5.372
18 C -0.373 4.373
19 H 0.088 0.912
20 C -0.208 4.208
21 N -0.579 5.579
22 Si 0.736 3.264
23 H -0.213 1.213
24 H -0.218 1.218
25 H -0.213 1.213
26 C -0.108 4.108
27 H 0.092 0.908
28 C -0.002 4.002
29 O 0.052 5.948
30 N -0.119 5.119
31 H 0.125 0.875
32 H 0.079 0.921
33 H 0.079 0.921
34 H 0.208 0.792
35 H 0.100 0.900
36 H 0.091 0.909
37 H 0.081 0.919
38 H 0.077 0.923
39 H 0.073 0.927
40 H 0.077 0.923
41 H 0.075 0.925
42 H 0.079 0.921
43 H 0.220 0.780
44 H 0.066 0.934
45 H 0.100 0.900
46 H 0.100 0.900
Dipole moment (debyes) X Y Z Total
from point charges -22.348 -8.896 -1.276 24.087
hybrid contribution 1.220 -0.051 0.105 1.225
sum -21.128 -8.947 -1.171 22.974
Atomic orbital electron populations
1.23100 0.76593 1.04272 1.02461 1.86226 1.22745 1.20400 1.89352
1.21872 0.90617 0.85816 1.00903 1.22182 0.94455 0.94946 1.06484
1.24113 0.86892 0.93744 1.06360 1.16058 0.85104 0.80668 0.78760
1.90941 1.26355 1.70299 1.50174 1.48322 1.09951 1.04090 1.70578
1.22624 0.86476 0.91922 1.01805 1.21972 0.96841 0.95181 0.96558
0.88433 1.21551 1.00091 0.99252 0.94017 1.21431 0.97083 0.97297
0.99650 1.21891 0.93881 1.02220 0.99135 1.19086 0.85395 0.95518
0.91998 0.93303 1.42684 1.01430 1.08231 1.84872 1.19178 0.88157
0.89237 1.40683 0.91236 1.24741 0.97284 0.96178 1.02597 1.69647
1.17491 1.16168 1.54565 0.86304 0.81290 0.81045 0.77721 1.21331
1.21757 1.21330 1.21153 0.93699 0.94396 1.01595 0.90820 1.21989
0.87094 0.87238 1.03882 1.85030 1.11908 1.29397 1.68501 1.73970
1.16147 0.96737 1.25016 0.87487 0.92124 0.92113 0.79192 0.89978
0.90904 0.91906 0.92278 0.92691 0.92266 0.92457 0.92127 0.77952
0.93390 0.89990 0.89969
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.20 10.73 101.05 1.08 1.29 16
2 O -0.28 -2.88 10.57 -18.91 -0.20 -3.08 16
3 C 0.21 2.38 8.00 -16.72 -0.13 2.25 16
4 C -0.16 -1.86 10.97 -38.76 -0.43 -2.28 16
5 C -0.04 -0.57 7.05 -36.36 -0.26 -0.83 16
6 C 0.61 9.22 7.84 -12.47 -0.10 9.12 16
7 O -0.50 -9.35 17.23 5.29 0.09 -9.26 16
8 N -0.60 -8.42 3.31 -172.44 -0.57 -8.99 16
9 C 0.09 1.03 5.36 -2.64 -0.01 1.02 16
10 C -0.09 -0.97 3.40 -89.63 -0.30 -1.27 16
11 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16
12 C -0.11 -1.27 4.89 -26.86 -0.13 -1.40 16
13 C -0.12 -1.46 5.94 -26.99 -0.16 -1.62 16
14 C -0.13 -2.18 5.40 -27.67 -0.15 -2.33 16
15 C 0.19 3.43 2.52 -70.33 -0.18 3.26 16
16 H 0.05 0.91 8.01 -51.93 -0.42 0.49 16
17 N -0.73 -17.26 4.86 -55.78 -0.27 -17.53 16
18 C -0.24 -6.46 9.86 -15.06 -0.15 -6.61 16
19 H 0.07 1.80 7.83 -52.48 -0.41 1.39 16
20 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16
21 N -0.93 -27.86 13.06 55.49 0.72 -27.14 16
22 Si 0.91 22.15 29.55 -169.99 -5.02 17.13 16
23 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16
24 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16
25 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16
26 C -0.09 -1.32 2.35 -92.12 -0.22 -1.53 16
27 H 0.07 1.11 8.13 -51.93 -0.42 0.68 16
28 C 0.12 1.97 4.85 -3.51 -0.02 1.95 16
29 O 0.12 1.38 8.64 15.49 0.13 1.51 16
30 N -0.39 -4.69 11.50 30.47 0.35 -4.34 16
31 H 0.11 0.42 8.14 -51.93 -0.42 0.00 16
32 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16
33 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16
34 H 0.19 1.95 8.06 -52.49 -0.42 1.53 16
35 H 0.08 0.81 6.26 -51.93 -0.33 0.49 16
36 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16
37 H 0.06 0.81 7.93 -51.93 -0.41 0.40 16
38 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16
39 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16
40 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16
41 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16
42 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16
43 H 0.39 9.74 5.70 -40.82 -0.23 9.50 16
44 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16
45 H 0.08 1.51 8.07 -51.93 -0.42 1.10 16
46 H 0.08 1.55 7.34 -51.93 -0.38 1.17 16
LS Contribution 371.74 15.07 5.60 5.60
Total: -1.00 -31.63 371.74 -7.21 -38.84
By element:
Atomic # 1 Polarization: 13.48 SS G_CDS: -6.80 Total: 6.68 kcal
Atomic # 6 Polarization: 1.82 SS G_CDS: -1.24 Total: 0.58 kcal
Atomic # 7 Polarization: -58.23 SS G_CDS: 0.23 Total: -57.99 kcal
Atomic # 8 Polarization: -10.86 SS G_CDS: 0.03 Total: -10.83 kcal
Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal
Total LS contribution 5.60 Total: 5.60 kcal
Total: -31.63 -7.21 -38.84 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000992686916.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 53.650 kcal
(2) G-P(sol) polarization free energy of solvation -31.629 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.021 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.210 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.839 kcal
(6) G-S(sol) free energy of system = (1) + (5) 14.811 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.70 seconds