Wall clock time and date at job start Tue Mar 31 2020 19:22:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35356 * 116.99695 * 2 1 4 4 N 1.30554 * 125.44291 * 180.35057 * 3 2 1 5 5 C 1.36336 * 108.38131 * 180.16257 * 4 3 2 6 6 C 1.47359 * 126.41277 * 179.82230 * 5 4 3 7 7 O 1.21620 * 120.00047 * 179.68577 * 6 5 4 8 8 N 1.34773 * 120.00421 * 359.68471 * 6 5 4 9 9 C 1.48246 * 125.78145 * 359.97438 * 8 6 5 10 10 C 1.52332 * 105.86615 * 176.81239 * 9 8 6 11 11 H 1.09000 * 110.24236 * 272.17805 * 10 9 8 12 12 C 1.51442 * 117.45129 * 145.32067 * 10 9 8 13 13 C 1.53839 * 107.04272 * 181.22652 * 12 10 9 14 14 C 1.52529 * 111.65684 * 57.20106 * 13 12 10 15 15 C 1.53824 * 111.70276 * 305.95125 * 14 13 12 16 16 H 1.09004 * 109.94185 * 298.08158 * 15 14 13 17 17 N 1.46496 * 109.94295 * 176.91592 * 15 14 13 18 18 C 1.36945 * 119.99718 * 85.00360 * 17 15 14 19 19 H 1.07997 * 119.99756 * 359.97438 * 18 17 15 20 20 C 1.38805 * 119.99878 * 179.97438 * 18 17 15 21 21 N 1.31624 * 120.00257 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99929 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.47174 * 270.00277 * 22 20 18 24 24 H 1.48501 * 109.47062 * 30.00228 * 22 20 18 25 25 H 1.48499 * 109.46981 * 150.00382 * 22 20 18 26 26 C 1.51618 * 107.02043 * 57.53899 * 15 14 13 27 27 H 1.09009 * 110.50434 * 55.20166 * 26 15 14 28 28 C 1.48665 * 125.79081 * 179.97438 * 8 6 5 29 29 C 1.35920 * 107.17002 * 359.55533 * 5 4 3 30 30 O 1.34202 * 125.44709 * 0.02562 * 3 2 1 31 31 H 1.09002 * 109.47552 * 300.00328 * 1 2 3 32 32 H 1.08999 * 109.46871 * 60.00271 * 1 2 3 33 33 H 1.08996 * 109.46850 * 180.02562 * 1 2 3 34 34 H 1.09007 * 110.17392 * 57.71721 * 9 8 6 35 35 H 1.08993 * 110.17395 * 295.91644 * 9 8 6 36 36 H 1.09004 * 109.93942 * 61.84457 * 12 10 9 37 37 H 1.09002 * 109.93740 * 300.61258 * 12 10 9 38 38 H 1.09004 * 109.04294 * 296.64329 * 13 12 10 39 39 H 1.08991 * 109.04576 * 177.75829 * 13 12 10 40 40 H 1.09000 * 109.03374 * 185.38437 * 14 13 12 41 41 H 1.08995 * 108.97548 * 66.48426 * 14 13 12 42 42 H 0.96996 * 120.00499 * 265.00091 * 17 15 14 43 43 H 0.97001 * 119.99885 * 179.97438 * 21 20 18 44 44 H 1.08997 * 110.62191 * 37.13184 * 28 8 6 45 45 H 1.08997 * 110.76272 * 274.18044 * 28 8 6 46 46 H 1.08004 * 126.45115 * 180.25923 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0434 1.2061 0.0000 4 7 3.3348 1.3978 -0.0065 5 6 3.5700 2.7407 -0.0004 6 6 4.8891 3.3977 -0.0008 7 8 4.9638 4.6116 -0.0006 8 7 6.0127 2.6535 -0.0013 9 6 6.0712 1.1722 -0.0009 10 6 7.5495 0.8137 -0.0832 11 1 7.8672 0.7603 -1.1245 12 6 8.0104 -0.4228 0.6597 13 6 9.5289 -0.5396 0.4422 14 6 10.2627 0.7128 0.9110 15 6 9.6901 1.9842 0.2615 16 1 9.8149 1.9375 -0.8204 17 7 10.3719 3.1670 0.7925 18 6 11.5540 3.5819 0.2394 19 1 11.9836 3.0368 -0.5880 20 6 12.1998 4.7030 0.7421 21 7 11.6763 5.3671 1.7509 22 14 13.8125 5.2685 -0.0120 23 1 14.9443 4.6092 0.6878 24 1 13.8407 4.9042 -1.4513 25 1 13.9348 6.7418 0.1282 26 6 8.2158 2.0361 0.6119 27 1 8.0782 1.9871 1.6922 28 6 7.4034 3.1787 -0.0023 29 6 2.3601 3.3600 0.0001 30 8 1.4226 2.3958 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0276 0.0005 34 1 5.5395 0.7747 -0.8656 35 1 5.6398 0.7791 0.9196 36 1 7.5089 -1.3046 0.2610 37 1 7.7940 -0.3198 1.7231 38 1 9.7256 -0.6907 -0.6192 39 1 9.9027 -1.3996 0.9978 40 1 11.3176 0.6250 0.6508 41 1 10.1693 0.7938 1.9939 42 1 9.9862 3.6564 1.5358 43 1 12.1279 6.1503 2.1024 44 1 7.4756 4.0753 0.6133 45 1 7.7380 3.3845 -1.0190 46 1 2.1848 4.4257 0.0004 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000992750251.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:22:46 Heat of formation + Delta-G solvation = -23.723264 kcal Electronic energy + Delta-G solvation = -29378.804177 eV Core-core repulsion = 25271.321725 eV Total energy + Delta-G solvation = -4107.482452 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.71660 -40.26113 -39.22125 -38.45437 -35.52984 -35.10317 -33.91479 -31.46803 -30.74348 -30.11073 -28.85481 -27.86532 -26.68204 -25.39780 -23.74741 -22.96910 -22.55516 -20.87694 -20.34104 -20.03212 -19.66539 -18.49471 -17.83196 -17.33716 -16.94120 -16.65388 -15.84613 -15.66793 -15.54325 -15.14058 -14.82771 -14.20514 -14.15395 -13.99908 -13.80535 -13.55221 -12.97620 -12.85588 -12.73408 -12.44685 -12.34929 -12.31660 -12.03649 -11.83434 -11.40405 -11.29410 -10.94900 -10.88828 -10.84630 -10.67721 -10.42847 -10.17273 -10.15597 -10.12316 -10.02804 -9.70488 -9.39554 -9.01217 -8.83822 -8.42872 -6.91264 -5.71711 -3.00618 0.88871 1.59310 1.83771 2.42214 2.98048 3.27914 3.46870 3.52112 3.53878 4.13069 4.41274 4.50274 4.55216 4.62572 4.65847 4.78490 4.93773 4.95453 5.06068 5.22578 5.38716 5.45576 5.50010 5.58676 5.63517 5.69983 5.74899 5.88089 5.97192 5.99933 6.04771 6.15946 6.20091 6.25135 6.29121 6.29917 6.38978 6.52983 6.62455 6.68067 6.71098 6.92266 7.15255 7.23245 7.61486 7.74708 8.16628 8.46425 9.57808 10.14994 10.49680 11.50737 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.018433 B = 0.002744 C = 0.002437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1518.670277 B =10202.834304 C =11484.745230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.245 6.245 3 C 0.375 3.625 4 N -0.448 5.448 5 C -0.037 4.037 6 C 0.611 3.389 7 O -0.535 6.535 8 N -0.603 5.603 9 C 0.126 3.874 10 C -0.110 4.110 11 H 0.081 0.919 12 C -0.099 4.099 13 C -0.114 4.114 14 C -0.138 4.138 15 C 0.196 3.804 16 H 0.051 0.949 17 N -0.722 5.722 18 C -0.237 4.237 19 H 0.070 0.930 20 C -0.013 4.013 21 N -0.931 5.931 22 Si 0.904 3.096 23 H -0.291 1.291 24 H -0.282 1.282 25 H -0.292 1.292 26 C -0.103 4.103 27 H 0.081 0.919 28 C 0.125 3.875 29 C 0.000 4.000 30 O -0.227 6.227 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.119 0.881 34 H 0.076 0.924 35 H 0.072 0.928 36 H 0.061 0.939 37 H 0.064 0.936 38 H 0.055 0.945 39 H 0.054 0.946 40 H 0.061 0.939 41 H 0.054 0.946 42 H 0.384 0.616 43 H 0.255 0.745 44 H 0.086 0.914 45 H 0.075 0.925 46 H 0.237 0.763 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.675 -13.360 -3.507 27.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.152 6.152 3 C 0.129 3.871 4 N -0.194 5.194 5 C -0.156 4.156 6 C 0.397 3.603 7 O -0.413 6.413 8 N -0.335 5.335 9 C 0.003 3.997 10 C -0.129 4.129 11 H 0.100 0.900 12 C -0.136 4.136 13 C -0.153 4.153 14 C -0.178 4.178 15 C 0.085 3.915 16 H 0.069 0.931 17 N -0.363 5.363 18 C -0.369 4.369 19 H 0.088 0.912 20 C -0.209 4.209 21 N -0.580 5.580 22 Si 0.736 3.264 23 H -0.218 1.218 24 H -0.208 1.208 25 H -0.218 1.218 26 C -0.123 4.123 27 H 0.100 0.900 28 C 0.004 3.996 29 C -0.073 4.073 30 O -0.118 6.118 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.137 0.863 34 H 0.094 0.906 35 H 0.091 0.909 36 H 0.079 0.921 37 H 0.082 0.918 38 H 0.074 0.926 39 H 0.072 0.928 40 H 0.079 0.921 41 H 0.072 0.928 42 H 0.218 0.782 43 H 0.065 0.935 44 H 0.105 0.895 45 H 0.093 0.907 46 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges -23.099 -13.343 -3.625 26.921 hybrid contribution 0.010 0.953 -0.054 0.955 sum -23.089 -12.390 -3.679 26.460 Atomic orbital electron populations 1.23294 0.75191 1.05622 1.02979 1.86386 1.23585 1.15929 1.89339 1.23490 0.85761 0.79520 0.98326 1.71296 1.09214 1.15738 1.23171 1.21705 0.95813 0.88269 1.09822 1.16233 0.81115 0.85389 0.77532 1.90865 1.86201 1.12365 1.51881 1.48990 1.05947 1.07930 1.70612 1.21747 0.96282 0.78919 1.02713 1.21940 0.93749 0.96388 1.00861 0.90034 1.21269 0.96134 0.96222 1.00014 1.21552 0.94279 0.98427 1.00994 1.22310 0.99993 0.94701 1.00846 1.19974 0.87448 0.87538 0.96503 0.93145 1.42415 1.24942 1.28716 1.40188 1.19211 0.97879 1.07696 1.12072 0.91221 1.24730 0.99094 0.98408 0.98657 1.69661 1.40030 1.20894 1.27383 0.86230 0.83922 0.77753 0.78523 1.21845 1.20804 1.21848 1.22372 0.96541 0.93231 1.00160 0.90037 1.22025 0.77806 0.97831 1.01919 1.24961 0.84865 0.93756 1.03672 1.84376 1.39597 1.15899 1.71938 0.91425 0.91444 0.86319 0.90608 0.90924 0.92064 0.91750 0.92586 0.92770 0.92061 0.92765 0.78195 0.93544 0.89544 0.90662 0.74742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.09 10.73 101.05 1.08 1.18 16 2 O -0.24 -2.11 10.55 -40.99 -0.43 -2.55 16 3 C 0.38 4.03 8.98 52.22 0.47 4.50 16 4 N -0.45 -5.82 8.92 -11.71 -0.10 -5.92 16 5 C -0.04 -0.50 6.83 -82.99 -0.57 -1.06 16 6 C 0.61 9.97 7.86 -12.55 -0.10 9.87 16 7 O -0.54 -10.18 17.18 5.26 0.09 -10.09 16 8 N -0.60 -9.57 3.38 -172.15 -0.58 -10.15 16 9 C 0.13 1.69 5.24 -3.42 -0.02 1.67 16 10 C -0.11 -1.47 2.31 -90.36 -0.21 -1.68 16 11 H 0.08 1.09 7.92 -51.93 -0.41 0.68 16 12 C -0.10 -1.18 5.70 -27.08 -0.15 -1.34 16 13 C -0.11 -1.51 5.83 -26.54 -0.15 -1.67 16 14 C -0.14 -2.37 5.45 -26.54 -0.14 -2.51 16 15 C 0.20 3.74 2.51 -68.20 -0.17 3.57 16 16 H 0.05 0.99 7.94 -51.93 -0.41 0.58 16 17 N -0.72 -17.66 5.10 -53.69 -0.27 -17.93 16 18 C -0.24 -6.49 9.95 -15.06 -0.15 -6.64 16 19 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 20 C -0.01 -0.37 5.50 -17.43 -0.10 -0.46 16 21 N -0.93 -28.25 13.06 55.49 0.72 -27.53 16 22 Si 0.90 22.53 29.55 -169.99 -5.02 17.51 16 23 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 24 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 25 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 26 C -0.10 -1.69 1.99 -89.90 -0.18 -1.87 16 27 H 0.08 1.40 8.01 -51.92 -0.42 0.98 16 28 C 0.12 2.18 6.49 -2.82 -0.02 2.17 16 29 C 0.00 0.00 11.93 29.90 0.36 0.35 16 30 O -0.23 -2.17 10.20 -17.75 -0.18 -2.35 16 31 H 0.07 0.21 8.14 -51.93 -0.42 -0.21 16 32 H 0.07 0.21 8.14 -51.93 -0.42 -0.21 16 33 H 0.12 0.16 8.14 -51.93 -0.42 -0.26 16 34 H 0.08 0.99 7.54 -51.93 -0.39 0.60 16 35 H 0.07 0.98 7.84 -51.93 -0.41 0.57 16 36 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.06 0.79 8.03 -51.93 -0.42 0.37 16 38 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 39 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 40 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 41 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 42 H 0.38 10.13 7.79 -40.82 -0.32 9.81 16 43 H 0.25 7.52 8.31 -40.82 -0.34 7.18 16 44 H 0.09 1.71 8.07 -51.93 -0.42 1.29 16 45 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 46 H 0.24 1.71 8.06 -52.48 -0.42 1.28 16 LS Contribution 377.19 15.07 5.68 5.68 Total: -1.00 -33.33 377.19 -7.11 -40.45 By element: Atomic # 1 Polarization: 13.77 SS G_CDS: -6.97 Total: 6.81 kcal Atomic # 6 Polarization: 6.12 SS G_CDS: -0.05 Total: 6.07 kcal Atomic # 7 Polarization: -61.30 SS G_CDS: -0.24 Total: -61.54 kcal Atomic # 8 Polarization: -14.46 SS G_CDS: -0.52 Total: -14.98 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -5.02 Total: 17.51 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -33.33 -7.11 -40.45 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992750251.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.726 kcal (2) G-P(sol) polarization free energy of solvation -33.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds